RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1356
(69 letters)
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 60.4 bits (145), Expect = 5e-14
Identities = 35/38 (92%), Positives = 38/38 (100%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 56.9 bits (136), Expect = 1e-12
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+YKLV+LG VGKS+L ++FV+G F E + TI
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE 37
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 55.8 bits (133), Expect = 3e-12
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ KLV++G+ A GK+ L++ + QF E T+
Sbjct: 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF 36
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 55.4 bits (132), Expect = 4e-12
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 55.3 bits (132), Expect = 4e-12
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+YK+V+LG VGKS+L ++FV G F E + TI
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE 37
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 55.4 bits (132), Expect = 6e-12
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K V++G+ AVGK+ L++ + +F T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF 37
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 53.9 bits (128), Expect = 2e-11
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K+++LG+S VGK+SL+ ++V +F ++TIG
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 36
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 53.5 bits (127), Expect = 2e-11
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+Y+LV++G VGKS+L ++F++ F + TI
Sbjct: 5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE 39
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 53.5 bits (127), Expect = 3e-11
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
I + +L +LG++ GKSSL+ RF+ G + +++
Sbjct: 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE 37
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 53.1 bits (126), Expect = 3e-11
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
Q+KLVL+G+ GK++ V R + G+F + +T+
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 36
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 53.1 bits (126), Expect = 4e-11
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
Y++ + G VGKSSLVLRFV+G F E T+
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV 35
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 53.0 bits (126), Expect = 4e-11
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K +K++LLG+ VGKSSL+ R+V +F TI
Sbjct: 3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI 39
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 52.7 bits (125), Expect = 4e-11
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+KLV LGE +VGK+SL+ RF+ F ++TI
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 33
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 52.5 bits (125), Expect = 5e-11
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGK+ ++ RF F+ STIG
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 40
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 52.3 bits (124), Expect = 7e-11
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K V++G+ AVGK+ L++ + F E T+
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 42
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 52.4 bits (124), Expect = 7e-11
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ K+V++G+S GK++L+ F + F E T+
Sbjct: 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 35
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 52.2 bits (124), Expect = 8e-11
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 39
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 51.9 bits (123), Expect = 8e-11
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ KL + G + VGKS+LV+RF+ +F + T+
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL 35
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 52.2 bits (124), Expect = 9e-11
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G S VGKS L+LRF + STIG
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 40
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 51.6 bits (122), Expect = 1e-10
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G+S VGK+ L RF G+F + E+TIG
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 36
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 51.9 bits (123), Expect = 1e-10
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G VGKS+L L+F+ +F E E T
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 52.0 bits (123), Expect = 1e-10
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
+KLV++G VGKS+L ++F++ F
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDY 35
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 51.6 bits (122), Expect = 1e-10
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
YKLV++G+ VGKS+L ++F + F + TI
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI 37
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 51.2 bits (121), Expect = 2e-10
Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ KLVLLGE+AVGKSS+VLRFV F E +E TIG
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 50.9 bits (121), Expect = 2e-10
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 36
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 51.0 bits (121), Expect = 2e-10
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+K +++G++ VGKS L+L+F +F + TI
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI 36
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 51.0 bits (121), Expect = 2e-10
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G + VGK+ LV RF +G F Q +TIG
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 39
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 50.4 bits (119), Expect = 3e-10
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ K+ LLG++ VGKSS++ RFV F TI
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI 37
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 50.3 bits (119), Expect = 4e-10
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKNNT 69
+K++L+G+S VGK+ L++RF G F + GI
Sbjct: 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN 46
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 49.9 bits (118), Expect = 4e-10
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHE 56
+K+VLLGE VGK+SLVLR+ +F++
Sbjct: 3 SFKVVLLGEGCVGKTSLVLRYCENKFND 30
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 49.9 bits (118), Expect = 6e-10
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G+ VGKS L+ +F +F TIG
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG 38
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 49.7 bits (117), Expect = 6e-10
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
YK++LLG VGKS+L F + E+
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG 34
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 49.7 bits (117), Expect = 6e-10
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKNNT 69
Q+K K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 1 QSK--SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL 44
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 49.5 bits (117), Expect = 8e-10
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 38
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 49.5 bits (117), Expect = 8e-10
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G S+VGK+S + R+ F ST+G
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 49.6 bits (117), Expect = 9e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K V++G+ AVGK+ L++ + F T+
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 49.1 bits (116), Expect = 1e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K++++GES VGKSSL+LRF F +TIG
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIG 41
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 48.4 bits (114), Expect = 2e-09
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
+K +++G + GKS L+ +F+ +F +
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNH 36
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 48.1 bits (113), Expect = 3e-09
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K+++LG+S VGK+SL+ R+V ++ + ++TIG
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG 36
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 47.8 bits (112), Expect = 3e-09
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
+ +L L+G GK++ V GQF+E T
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPT 34
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 47.8 bits (112), Expect = 3e-09
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
Y++VL+GE VGKS+L F + +
Sbjct: 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV 36
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 47.2 bits (111), Expect = 7e-09
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ KL+LLG GKS+ + + T G
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTG 34
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 47.0 bits (110), Expect = 7e-09
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
K+V++G AVGKSS++ R+ +G F + +
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKK 33
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 45.1 bits (105), Expect = 3e-08
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQE 59
+ ++++LG GK++++ R G+
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVGEVVTTIP 35
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 44.3 bits (103), Expect = 7e-08
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
+ +L++LG GK++++ +F
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFNGEDVDTIS 31
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 43.9 bits (102), Expect = 9e-08
Identities = 5/31 (16%), Positives = 17/31 (54%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
+++++G A GK++++ + G+ +
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTI 32
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 44.0 bits (103), Expect = 1e-07
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++L+LLG GKS++V + T G
Sbjct: 6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSG 36
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 43.4 bits (101), Expect = 1e-07
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
+ ++++LG A GK++++ + GQ +
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTV 44
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 43.5 bits (101), Expect = 1e-07
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
KL+ LG GK++L+ + Q
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQ 29
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 43.1 bits (100), Expect = 2e-07
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEY 57
KLV LG GK++L+ + ++
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQH 41
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 43.1 bits (100), Expect = 2e-07
Identities = 5/31 (16%), Positives = 17/31 (54%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQE 59
++K++++G GK++++ +F +
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP 45
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 42.6 bits (99), Expect = 4e-07
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K++LLG GKS+ + + + Q+ T G
Sbjct: 2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKG 33
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 41.9 bits (97), Expect = 7e-07
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ KL+LLG GKS++V + + G
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIHE-----AGTG 31
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 41.1 bits (95), Expect = 1e-06
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
+ ++++LG GK++++ R G+ +
Sbjct: 17 ELRILILGLDGAGKTTILYRLQIGEVVTTK 46
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 41.1 bits (95), Expect = 1e-06
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKNN 68
+ +++LLG GK++L+ + + IK+
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV 55
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 41.2 bits (95), Expect = 1e-06
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++ +G GK+ L +R + GQ+ + +++I
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT 33
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 32.7 bits (73), Expect = 0.001
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHE 56
Q +++ G GK+SL+
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP 30
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 31.3 bits (69), Expect = 0.004
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 31 KLVLLGESAVGKSSLVLRFVR 51
K+V+ G GKSSL+
Sbjct: 3 KVVIAGRPNAGKSSLLNALAG 23
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.9 bits (63), Expect = 0.033
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 33 VLLGESAVGKSSLVLRFVR 51
++G+ VGKS+L+ +
Sbjct: 9 AIVGKPNVGKSTLLNNLLG 27
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 28.6 bits (62), Expect = 0.045
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 32 LVLLGESAVGKSSLVLRFVRGQFHEY 57
++LG GKSS++ + Y
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPY 57
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.2 bits (61), Expect = 0.056
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFH 55
++ G S GKSS + +
Sbjct: 16 GIEVAFAGRSNAGKSSALNTLTNQKSL 42
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.8 bits (60), Expect = 0.071
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 33 VLLGESAVGKSSLVLRFVR 51
+++G VGKS+L + V+
Sbjct: 4 LIVGRPNVGKSTLFNKLVK 22
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 27.6 bits (60), Expect = 0.078
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 31 KLVLLGESAVGKSSLVLRFVR 51
++V++G+ VGKS+L+ R +
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLN 22
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 27.7 bits (61), Expect = 0.080
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 33 VLLGESAVGKSSLV----LRFVRGQ 53
VL+GE VGK+++V R V+G
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIVKGD 71
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.6 bits (61), Expect = 0.088
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 32 LVLLGESAVGKSSLVLRFVR 51
++L G S +GKS L +
Sbjct: 18 VLLTGRSGIGKSECALDLIN 37
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.6 bits (61), Expect = 0.093
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 32 LVLLGESAVGKSSLVLRFVR 51
+++ G+S VGKS L V+
Sbjct: 17 VLITGDSGVGKSETALELVQ 36
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 27.3 bits (59), Expect = 0.12
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 31 KLVLLGESAVGKSSLVLRFVR 51
K+ ++G VGKS+L +
Sbjct: 10 KVAIVGRPNVGKSTLFNAILN 30
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 27.2 bits (60), Expect = 0.12
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 32 LVLLGESAVGKSSLVLRFVR 51
+++ G+S +GKS L ++
Sbjct: 18 VLITGDSGIGKSETALELIK 37
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 27.0 bits (59), Expect = 0.16
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKNNT 69
+ + GE+ GKSS + RG +E + + G+ T
Sbjct: 58 NVAVTGETGSGKSSFINTL-RGIGNEEEGAAKTGVVEVT 95
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.0 bits (58), Expect = 0.17
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 33 VLLGESAVGKSSLVLRFVR 51
+ G S VGKS+L+ R
Sbjct: 4 IFAGRSNVGKSTLIYRLTG 22
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 26.3 bits (57), Expect = 0.26
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 31 KLVLLGESAVGKSSLV 46
++++G+ VGKSS V
Sbjct: 34 TILVMGKGGVGKSSTV 49
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.6 bits (55), Expect = 0.45
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 32 LVLLGESAVGKSSLV 46
LVLLG VG+ +
Sbjct: 6 LVLLGAHGVGRRHIK 20
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 25.4 bits (54), Expect = 0.49
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 33 VLLGESAVGKSSLVLRFVR 51
++G VGKS+L+ + +
Sbjct: 9 AIVGRPNVGKSTLLNKLLG 27
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 25.3 bits (54), Expect = 0.57
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 31 KLVLLGESAVGKSSLV 46
K+++ GE VGK++LV
Sbjct: 2 KIIITGEPGVGKTTLV 17
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 25.3 bits (54), Expect = 0.68
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 32 LVLLGESAVGKSSLV 46
+V+ G S GKS+L+
Sbjct: 4 IVISGPSGTGKSTLL 18
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 25.0 bits (54), Expect = 0.79
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 33 VLLGESAVGKSS----LVLRFVRGQFHE 56
+L+GES VGK++ L R V+G E
Sbjct: 43 LLVGESGVGKTAIAEGLAWRIVQGDVPE 70
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 25.0 bits (53), Expect = 0.82
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 34 LLGESAVGKSSLVLRFVR 51
L+G GKSSL+ R
Sbjct: 6 LVGYPNAGKSSLLAAMTR 23
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 24.7 bits (52), Expect = 0.87
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 31 KLVLLGESAVGKSSLVLRF 49
++ L G S VGKSS +
Sbjct: 25 EIALAGRSNVGKSSFINSL 43
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 24.5 bits (53), Expect = 1.1
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65
+ ++G S GKS+L R E + I G
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 24.5 bits (52), Expect = 1.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 32 LVLLGESAVGKSSLV 46
+VL G S GKS+L+
Sbjct: 3 VVLSGPSGAGKSTLL 17
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 24.3 bits (51), Expect = 1.6
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 33 VLLGESAVGKSSLV 46
+++G++ GKSSL+
Sbjct: 27 LIIGQNGSGKSSLL 40
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 23.8 bits (51), Expect = 1.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 32 LVLLGESAVGKSSL 45
VLLG + GKS
Sbjct: 27 CVLLGPTGAGKSVF 40
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 23.8 bits (51), Expect = 1.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 32 LVLLGESAVGKSSLVLRFVRG-QFHEYQESTIGGIKNN 68
+V +G S GKS+L LR + G + + IG + N
Sbjct: 29 VVFVGPSGCGKSTL-LRMIAGLETITSGDLFIGEKRMN 65
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 24.0 bits (51), Expect = 1.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 32 LVLLGESAVGKSSLV 46
++ S GKSSL+
Sbjct: 5 YIVSAPSGAGKSSLI 19
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 23.7 bits (50), Expect = 2.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 34 LLGESAVGKSSLVLRFVR 51
L+G +VGKS+L+
Sbjct: 6 LVGFPSVGKSTLLSVVSS 23
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 23.7 bits (51), Expect = 2.1
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65
L+G + GKS++ + + G
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGK 76
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 23.7 bits (51), Expect = 2.4
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 32 LVLLGESAVGKSSL 45
++LLG S GK++
Sbjct: 32 MILLGPSGCGKTTT 45
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 23.5 bits (50), Expect = 2.5
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 32 LVLLGESAVGKSSL 45
V+LG + GK+
Sbjct: 29 FVILGPTGAGKTLF 42
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 23.5 bits (50), Expect = 2.7
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 32 LVLLGESAVGKSSL 45
+LG S GK++
Sbjct: 34 FGILGPSGAGKTTF 47
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 23.2 bits (50), Expect = 2.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 32 LVLLGESAVGKSSL 45
LVLLG S GK++
Sbjct: 35 LVLLGPSGCGKTTT 48
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 23.3 bits (49), Expect = 2.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQF 54
++ ++G + GKSS++ FV F
Sbjct: 28 QIAVVGGQSAGKSSVLENFVGRDF 51
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 23.5 bits (49), Expect = 2.9
Identities = 8/31 (25%), Positives = 8/31 (25%)
Query: 34 LLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
L GE GKS L G
Sbjct: 39 LFGEFRTGKSQLCHTLAVTCQIPLDIGGGEG 69
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 23.3 bits (50), Expect = 3.0
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 32 LVLLGESAVGKSSL 45
+ ++G S GKS+
Sbjct: 31 ISIIGSSGSGKSTF 44
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 23.1 bits (48), Expect = 3.5
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 33 VLLGESAVGKSSLVL 47
L+ GKS L L
Sbjct: 33 ALVSPGGAGKSMLAL 47
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 23.0 bits (49), Expect = 3.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 32 LVLLGESAVGKSSLVLRFVR 51
L L+G + GKS+L+ R
Sbjct: 28 LHLVGPNGAGKSTLLARMAG 47
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 22.9 bits (49), Expect = 4.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 31 KLVLLGESAVGKSSLV 46
+ G S GKS++
Sbjct: 30 IIAFAGPSGGGKSTIF 45
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 22.9 bits (48), Expect = 5.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQF 54
++V++G + GKSS++ V F
Sbjct: 26 QIVVVGSQSSGKSSVLENIVGRDF 49
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 22.5 bits (48), Expect = 5.4
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
+ L+G S GKS++ R + + G
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 76
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 22.6 bits (48), Expect = 5.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 31 KLVLLGESAVGKSSLV 46
L + G + GK+SL+
Sbjct: 64 MLAITGSTGSGKTSLL 79
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 22.5 bits (48), Expect = 5.6
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 32 LVLLGESAVGKSSLVLRFVRG 52
++G S GKS+L +R V
Sbjct: 34 YGVIGASGAGKSTL-IRCVNL 53
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 22.6 bits (47), Expect = 5.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 33 VLLGESAVGKSSLVLRFV 50
+ G + GK+ LV RFV
Sbjct: 30 LATGATGTGKTLLVSRFV 47
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 22.5 bits (48), Expect = 6.1
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 32 LVLLGESAVGKSSL 45
+ ++G S GKS++
Sbjct: 34 VSIMGPSGSGKSTM 47
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 22.4 bits (48), Expect = 6.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 31 KLVLLGESAVGKSSLV 46
+ +G S GKS+L+
Sbjct: 46 TVAFVGMSGGGKSTLI 61
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 22.3 bits (46), Expect = 8.8
Identities = 6/22 (27%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 33 VLLGESAVGKSSLV--LRFVRG 52
++G + GKS+++ +++V G
Sbjct: 28 AIVGPNGSGKSNIIDAIKWVFG 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.360
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 210,789
Number of extensions: 6503
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 105
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.6 bits)