Query psy13560
Match_columns 629
No_of_seqs 317 out of 439
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:22:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lru_A Serine/threonine-protei 82.4 0.29 1E-05 43.1 0.0 46 521-568 48-93 (98)
2 2k89_A PLA2P, PLAP, phospholip 81.1 3 0.0001 35.5 6.1 39 448-490 33-71 (80)
3 2lru_A Serine/threonine-protei 78.8 0.48 1.6E-05 41.7 0.0 47 270-318 48-94 (98)
4 2k89_A PLA2P, PLAP, phospholip 68.2 10 0.00036 32.2 6.1 52 175-239 20-71 (80)
5 3l3f_X Protein DOA1, DOA1/UFD3 38.0 50 0.0017 35.0 6.6 52 433-490 36-87 (362)
6 3pst_A Protein DOA1; protein d 29.6 78 0.0027 34.4 6.5 39 448-490 112-150 (425)
7 3l3f_X Protein DOA1, DOA1/UFD3 21.4 1.4E+02 0.0048 31.6 6.5 50 175-239 36-87 (362)
8 1r8j_A KAIA; circadian clock p 15.3 44 0.0015 34.4 0.9 29 35-63 171-199 (289)
9 3pst_A Protein DOA1; protein d 15.0 2.3E+02 0.0078 30.7 6.4 50 175-239 99-150 (425)
10 3tbn_A Putative uncharacterize 12.9 68 0.0023 27.6 1.3 19 7-25 52-70 (87)
No 1
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=82.37 E-value=0.29 Score=43.08 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=41.1
Q ss_pred cceeecCCCCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhc
Q psy13560 521 DQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQR 568 (629)
Q Consensus 521 DqFEWDl~~~~nsPE~FA~~~c~DLGL~gEF~~AIAhsIrEQl~~~~k 568 (629)
=||..||.. .+||++|..||..+.|+.+=..+||-.|+.++...++
T Consensus 48 IeF~Fdle~--Dta~eVA~EMVe~~~l~e~D~~~VaklI~~~v~~~~r 93 (98)
T 2lru_A 48 IEFSFDLER--DVPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIKR 93 (98)
Confidence 378899986 4899999999999999999999999999999876654
No 2
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=81.09 E-value=3 Score=35.48 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=35.3
Q ss_pred EeeeCCCCCCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Q psy13560 448 FTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 490 (629)
Q Consensus 448 F~WNlnE~~itPe~FA~~lc~Dl~l~p~~~~~~I~~sI~~Qi~ 490 (629)
+-.|.+| .|-.-|+.+|++-+| |..|..+|++-|.+...
T Consensus 33 LpyN~~d---nP~~aAqkFi~~n~L-p~~yldqI~~FI~~N~~ 71 (80)
T 2k89_A 33 LPYNTSD---DPWLTAYNFLQKNDL-NPMFLDQVAKFIIDNTK 71 (80)
T ss_dssp EEECTTS---CHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHS
T ss_pred cCccCCC---CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC
Confidence 5689999 799999999999999 67899999999998875
No 3
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=78.83 E-value=0.48 Score=41.72 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=41.2
Q ss_pred eeeEeeCCCCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhhccc
Q psy13560 270 DQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRT 318 (629)
Q Consensus 270 DqFEWDl~~~~nsPE~FA~~~c~DLgL~gEF~~aIAhsIrEql~~~~k~ 318 (629)
=||..||.. .+||++|..||..+.|+.+=..+||-.|+.++...++.
T Consensus 48 IeF~Fdle~--Dta~eVA~EMVe~~~l~e~D~~~VaklI~~~v~~~~r~ 94 (98)
T 2lru_A 48 IEFSFDLER--DVPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIKRK 94 (98)
Confidence 379999975 37999999999999999999999999999999766553
No 4
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=68.19 E-value=10 Score=32.17 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=38.8
Q ss_pred EEeecCCcEEEEEEEeeCCCCCcccCCCCCcCCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh
Q psy13560 175 LDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239 (629)
Q Consensus 175 Ld~e~d~~klrDtF~WNln~~~~~~~~~E~~itpe~FA~~lc~DL~lp~~~~~~~I~~sI~~Qi~ 239 (629)
+|+|++.-.--=.+-.|.+ | .|-.=|+.+|++-+||. .|.++|++-|.+...
T Consensus 20 FdVdi~dG~~~lkLpyN~~---------d---nP~~aAqkFi~~n~Lp~-~yldqI~~FI~~N~~ 71 (80)
T 2k89_A 20 FSIDVNEGGPSYKLPYNTS---------D---DPWLTAYNFLQKNDLNP-MFLDQVAKFIIDNTK 71 (80)
T ss_dssp EEECCSSSCSCEEEEECTT---------S---CHHHHHHHHHHHHTCCT-THHHHHHHHHHHHHS
T ss_pred EEEEcCCCCcccccCccCC---------C---CHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCC
Confidence 4555542111123567888 6 68899999999999996 799999999998765
No 5
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=38.02 E-value=50 Score=35.05 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=40.5
Q ss_pred eEEecccCCceeeEEEeeeCCCCCCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Q psy13560 433 IRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 490 (629)
Q Consensus 433 IRLd~e~dg~klrDtF~WNlnE~~itPe~FA~~lc~Dl~l~p~~~~~~I~~sI~~Qi~ 490 (629)
+.+|++-++-.++ .-.|.+| .|..-|+.+|++-+| |..|.++|++-|.+-..
T Consensus 36 f~vdi~~g~~~~k--lpyN~~~---np~~~A~~F~~~~~l-~~~y~~~i~~fi~~n~~ 87 (362)
T 3l3f_X 36 FDVDIEDGKPPLK--LPINVSD---NPYTAADNFLARYEL-PMSYRDQVVQFILKNTN 87 (362)
T ss_dssp EEECCSTTSCCEE--EEECTTS---CHHHHHHHHHHHTTC-CGGGHHHHHHHHHHHCC
T ss_pred EEEEcCCCCcccc--CCCcCCC---CHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Confidence 3444543332344 6789999 799999999999999 68999999999988654
No 6
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.63 E-value=78 Score=34.36 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=34.6
Q ss_pred EeeeCCCCCCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Q psy13560 448 FTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 490 (629)
Q Consensus 448 F~WNlnE~~itPe~FA~~lc~Dl~l~p~~~~~~I~~sI~~Qi~ 490 (629)
.-.|.+| .|-.-|+.+|.+-+| |..|.++|++-|.+-..
T Consensus 112 LpyN~~~---np~~~A~~Fi~~~~L-~~~y~~qi~~FI~~N~~ 150 (425)
T 3pst_A 112 LPINVSD---NPYTAADNFLARYEL-PMSYRDQVVQLILKNTN 150 (425)
T ss_dssp EEECTTC---CHHHHHHHHHHHHTC-CGGGHHHHHHHHHHHC-
T ss_pred CCccCCC---CHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Confidence 6789999 799999999999999 67899999999988654
No 7
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.42 E-value=1.4e+02 Score=31.63 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=39.7
Q ss_pred EEeecC-Cc-EEEEEEEeeCCCCCcccCCCCCcCCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh
Q psy13560 175 LDMEIE-GQ-KLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239 (629)
Q Consensus 175 Ld~e~d-~~-klrDtF~WNln~~~~~~~~~E~~itpe~FA~~lc~DL~lp~~~~~~~I~~sI~~Qi~ 239 (629)
+|+|++ |. .++ .-.|.+ | .|-.=|+.+|++-+||. .|.+||++-|.+-..
T Consensus 36 f~vdi~~g~~~~k--lpyN~~---------~---np~~~A~~F~~~~~l~~-~y~~~i~~fi~~n~~ 87 (362)
T 3l3f_X 36 FDVDIEDGKPPLK--LPINVS---------D---NPYTAADNFLARYELPM-SYRDQVVQFILKNTN 87 (362)
T ss_dssp EEECCSTTSCCEE--EEECTT---------S---CHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHCC
T ss_pred EEEEcCCCCcccc--CCCcCC---------C---CHHHHHHHHHHHcCCCH-HHHHHHHHHHHhcCC
Confidence 566654 33 344 678998 6 68899999999999996 799999999987654
No 8
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=15.29 E-value=44 Score=34.39 Aligned_cols=29 Identities=28% Similarity=0.525 Sum_probs=25.7
Q ss_pred hhhhhhhhCccceeeccCHHHHHHHHhhc
Q psy13560 35 FRGSLYKKYPGLFRRTISNEERKRLLDTA 63 (629)
Q Consensus 35 ~~~~lyk~yp~l~rr~~t~~er~~~~~~~ 63 (629)
+.|--||+-|+.+=|.++++||+.+.+.-
T Consensus 171 YLGVYYKR~p~~F~rnl~~~ErqeLl~~L 199 (289)
T 1r8j_A 171 YLGVYYKRDPDRFLRNLPAYESQKLHQAM 199 (289)
T ss_dssp EEEEEECCCGGGSTTTSCHHHHHHHHHHH
T ss_pred ccceeeeeCHHHHHHhCCHHHHHHHHHHH
Confidence 35778999999999999999999998874
No 9
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=14.97 E-value=2.3e+02 Score=30.72 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=39.2
Q ss_pred EEeecCC-c-EEEEEEEeeCCCCCcccCCCCCcCCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh
Q psy13560 175 LDMEIEG-Q-KLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239 (629)
Q Consensus 175 Ld~e~d~-~-klrDtF~WNln~~~~~~~~~E~~itpe~FA~~lc~DL~lp~~~~~~~I~~sI~~Qi~ 239 (629)
+|+|++. . .++ .-.|.+ | .|-.=|+.+|.+-+||. .|.+||++-|.+-..
T Consensus 99 f~Vdi~~g~p~lk--LpyN~~---------~---np~~~A~~Fi~~~~L~~-~y~~qi~~FI~~N~~ 150 (425)
T 3pst_A 99 FDVDIEDGKPPLK--LPINVS---------D---NPYTAADNFLARYELPM-SYRDQVVQLILKNTN 150 (425)
T ss_dssp EEECCSTTCCCEE--EEECTT---------C---CHHHHHHHHHHHHTCCG-GGHHHHHHHHHHHC-
T ss_pred EEEEcCCCCcccc--CCccCC---------C---CHHHHHHHHHHHcCCCH-HHHHHHHHHHHhcCC
Confidence 5666643 2 344 678998 6 68899999999999996 799999999988655
No 10
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=12.91 E-value=68 Score=27.63 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=13.4
Q ss_pred CCCCceeEeecCCeEEEee
Q psy13560 7 GDKPISFQIEENGDFYCIG 25 (629)
Q Consensus 7 ~~~p~~f~~~~~g~~y~~~ 25 (629)
|-+|++|..+++|+.|++|
T Consensus 52 ~f~P~~f~~e~~~~~~lC~ 70 (87)
T 3tbn_A 52 GLAPVAYTPDKAGTAYFCG 70 (87)
T ss_dssp TCCCEEECCSSCEEEEECS
T ss_pred CccceEEEECCCcEEEEec
Confidence 5567777777777777664
Done!