RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13560
(629 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 3e-12
Identities = 93/562 (16%), Positives = 148/562 (26%), Gaps = 210/562 (37%)
Query: 2 SVR----TYGDKPISFQIEENGDFYCIGSEVGNYLR-MFRGSLYKKYPGLFR--RTISNE 54
S R ++G + + I S+ L+ F L + G +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTA--SFFIASQ----LQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 55 E-RKRLLD--TAGINSHCLASSVTLLKVS--EVE-DILEGNDEKYKAVSIHT---EPLVP 105
E + L ++ + + +L + E E LEGND IH + L
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-------IHALAAKLLQE 111
Query: 106 RESKTKKAVPWAPSLPNSSHLDAVPQATPVNR---NRVNQKKVRTFPL---------CFD 153
++ K + + + P N V + + + F+
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 154 ------DTDPSCI---FENASHT-EVLVPIRLDMEIEGQKLRDTFTWNKNGTV------- 196
T + + ++ T L+ LD E + + W +N +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 197 ----FSFCSLETLITPEQFA--EVLCDDLDLNPLLFVP----------------AIAQS- 233
S LI Q A V L P AIA++
Sbjct: 232 LSIPISC----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 234 --------------------IRQQTDAFPAENL------------------------LDE 249
+R +A+P +L L +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 250 VHDQRVVIKLNIHVGNT-----SLVDQIEWDMSEKENSAEKFAV--------RLCTEL-- 294
Q V K N H+ SLV N A+ V L L
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLV-----------NGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 295 --GLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLET---- 348
G + I +S +R FS LPV +PF H S L
Sbjct: 396 AKAPSGLDQSRIPFS--------ERKLKFSNRFLPV-ASPF--H------SHLLVPASDL 438
Query: 349 -LTDAEMEK--------KI-----RD-QD-RNTRESKTKKAVPWAPSLP---------NS 383
D +I D D R S +++ V LP +
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 384 SH-LDAVPQATP-----VNRNR 399
+H LD P +RN+
Sbjct: 499 THILDFGPGGASGLGVLTHRNK 520
Score = 66.6 bits (162), Expect = 2e-11
Identities = 87/535 (16%), Positives = 152/535 (28%), Gaps = 206/535 (38%)
Query: 165 SH----TEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITP-EQFAEVLCDDL 219
SH +LVP +L++ F + L P E FA DD
Sbjct: 12 SHGSLEHVLLVPTAS--FFIASQLQEQFN-------------KILPEPTEGFAA---DDE 53
Query: 220 DLNP--LL--FVPAIAQSIRQQTDAFPAENLLDEV--HDQRVVIKLN-IHVGNTSLVDQI 272
P L+ F+ ++ + + +L+ + ++ N IH +L ++
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVG-QFDQVLNLCLTEFENCYLEGNDIH----ALAAKL 108
Query: 273 EWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQ------------RTYA 320
+ ++ K ++ ++TA + R + A
Sbjct: 109 LQE-NDTTLVKTKELIK---------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 321 -----------FSE------APLPVVEAPFRSHSESDQWSPFLETLTDAEME-KKIRDQD 362
F E +V + +E+ L L ++ +K+ Q
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET------LSELIRTTLDAEKVFTQG 212
Query: 363 RNTRESKTKKAVPW---APSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPL-------CF 412
N E W + P+ +L ++P + + PL +
Sbjct: 213 LNILE--------WLENPSNTPDKDYLLSIP--------------I-SCPLIGVIQLAHY 249
Query: 413 DDT------DPSCIFENAS----HTEVLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQF 462
T P + H++ LV I +W E F
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA---IAETD-----SW---------ESF 292
Query: 463 AEVLCDDLDLNPLLFV--------------PAIAQSIRQQTDAFPAENL----LDEVHDQ 504
+ + + L F+ P+I + + + P+ L L + Q
Sbjct: 293 FVSVRKAITV--LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 505 RVVIKLNIHVGNT-----SLVDQIEWDMSEKENSAEKFAV--------RLCTEL----GL 547
V K N H+ SLV N A+ V L L
Sbjct: 351 DYVNKTNSHLPAGKQVEISLV-----------NGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 548 GGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTD 602
G + I +S +R FS LPV +PF H S L +D
Sbjct: 400 SGLDQSRIPFS--------ERKLKFSNRFLPV-ASPF--H------SHLLVPASD 437
Score = 43.9 bits (103), Expect = 2e-04
Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 67/221 (30%)
Query: 425 SH----TEVLVPIRLDMEIEGQKLRDTFTWNKNETLITP-EQFAEVLCDDLDLNP--LL- 476
SH +LVP +L++ F + L P E FA DD P L+
Sbjct: 12 SHGSLEHVLLVPTAS--FFIASQLQEQFN----KILPEPTEGFAA---DDEPTTPAELVG 62
Query: 477 -FVPAIAQSIRQQTDAFPAENLLDEV--HDQRVVIKLN-IHVGNTSLVDQIEWDMSEKEN 532
F+ ++ + + +L+ + ++ N IH +L ++ + ++
Sbjct: 63 KFLGYVSSLVEPSKVG-QFDQVLNLCLTEFENCYLEGNDIH----ALAAKLLQE-NDTTL 116
Query: 533 SAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQ------------RTYA--------- 571
K ++ ++TA + R + A
Sbjct: 117 VKTKELIK---------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 572 --FSE------APLPVVEAPFRSHSESDQWSPFLETLTDAE 604
F E +V + +E+ + T DAE
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLS--ELIRTTLDAE 206
Score = 38.9 bits (90), Expect = 0.005
Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 44/176 (25%)
Query: 437 MEIEGQKLRDTFT-----WNKNETLITPEQFAEVLCDDLDLNP----LLFVPAIAQSIRQ 487
M G L T WN+ + + + + D + NP + F + IR+
Sbjct: 1631 M---GMDLYKTSKAAQDVWNRADNH-FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 488 QTDAFPAENLLDEVHDQRVVIK-LNIHVGNTSLVDQIEWDMSEKENS------AEKFAVR 540
A E ++D + K +N H + + + +S + + EK A
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG-LLSATQFTQPALTLMEKAAFE 1745
Query: 541 LCTELGL--------G---GEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFR 585
GL G GE+ A+A S+ +S + VV +R
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEY-AALA-SLADVMS-------IESL-VEVVF--YR 1789
Score = 37.0 bits (85), Expect = 0.026
Identities = 49/318 (15%), Positives = 88/318 (27%), Gaps = 95/318 (29%)
Query: 317 RTYAFSEAPLPVVE--APFRSH-------SESDQWSPFLETLTDAEMEKKI-RDQDRNTR 366
+A + P E F + S+ Q+ L E E D +
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT-EFENCYLEGNDIHAL 104
Query: 367 ESKTKKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASH 426
A L + + + + +N + + + P FD S +F
Sbjct: 105 ----------AAKLLQENDT-TLVKTKELIKNYITARIMAKRP--FDKKSNSALFRAVGE 151
Query: 427 TEVLVPIRLDMEIEGQ--------KLRDTFTWNKNETLITPEQFAEVLCDDLD--LNPLL 476
+L GQ +LRD + T L L+ L+
Sbjct: 152 GNA----QLVAIFGGQGNTDDYFEELRDLYQ--------TYHVLVGDLIKFSAETLSELI 199
Query: 477 FVPAIAQSIRQQ----------TDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWD 526
A+ + Q P ++ L + + L +G L
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI---PISCPL---IGVIQLA------ 247
Query: 527 MSEKENSAEKFAVRLCTELGLG-GEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFR 585
+ V LG GE + ++G + H S+ +V A
Sbjct: 248 ---------HYVV-TAKLLGFTPGELRS----YLKG-ATGH------SQG---LVTAVAI 283
Query: 586 SHSESDQWSPFLETLTDA 603
+ ++S W F ++ A
Sbjct: 284 AETDS--WESFFVSVRKA 299
Score = 35.8 bits (82), Expect = 0.058
Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 53/185 (28%)
Query: 177 MEIEGQKLRDTFT-----WNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNP----LLFV 227
M G L T WN+ F + + + D + NP + F
Sbjct: 1631 M---GMDLYKTSKAAQDVWNRADNHFK----------DTYGFSILDIVINNPVNLTIHFG 1677
Query: 228 PAIAQSIRQQTDAFPAENLLDEVHDQRVVIK-LNIHVGNTSLVDQIEWDMSEKENS---- 282
+ IR+ A E ++D + K +N H + + + +S + +
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG-LLSATQFTQPAL 1736
Query: 283 --AEKFAVRLCTELGL--------G---GEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVV 329
EK A GL G GE+ A+A S+ +S + VV
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEY-AALA-SLADVMS-------IESL-VEVV 1786
Query: 330 EAPFR 334
+R
Sbjct: 1787 F--YR 1789
Score = 31.6 bits (71), Expect = 0.94
Identities = 58/400 (14%), Positives = 108/400 (27%), Gaps = 168/400 (42%)
Query: 25 GS-EVGNYLRMFRG-SLYKKYPGLFRRTISNEERKRLLDTAGINSHCLASSVTLLKVSEV 82
GS E G M G LYK + + N DT G S+
Sbjct: 1625 GSQEQG----M--GMDLYKTSKAA--QDVWNRADNHFKDTYGF-------SIL------- 1662
Query: 83 EDILEGNDEKYKAVSIHTEPLVPRESKTKKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQ 142
DI+ N ++IH + + ++ ++ + +D + + +
Sbjct: 1663 -DIVINNP---VNLTIHFGG--EKGKRIRENYS---AMIFETIVDGKLKTEKIFKE---- 1709
Query: 143 KKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDT-------FTWNKNGT 195
++ S F + L L T
Sbjct: 1710 ---------INEHSTSYTFR---SEKGL-------------LSATQFTQPALTLM----- 1739
Query: 196 VFSFCSLETL----ITPEQ--FA-----EV--LCDDLDLNPLLFVPAIAQSIRQQTDAFP 242
+ E L + P FA E L ++A D
Sbjct: 1740 --EKAAFEDLKSKGLIPADATFAGHSLGEYAALA------------SLA-------DVMS 1778
Query: 243 AENLLDEVH-----DQRVVIKLNIHVGNTSLV----DQIEWDMSEKENSAEKFAVRLCTE 293
E+L++ V Q V + + N ++ ++ S++ + + R+
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE--ALQYVVERVGKR 1836
Query: 294 LGLGGEFVTAIAYSIRGQLSWHQRTYAFS-EAPLPVVEAPFRSHSESDQWSPFLETLT-- 350
G V + Y++ Q Q Y + + + A L+T+T
Sbjct: 1837 ---TGWLVEIVNYNVENQ----Q--YVAAGD-----LRA--------------LDTVTNV 1868
Query: 351 -DAEMEKKIRDQDRNTRESKTKKAVPWAPSLPNSSHLDAV 389
+ +KI + L S L+ V
Sbjct: 1869 LNFIKLQKI----------DIIE-------LQKSLSLEEV 1891
Score = 31.2 bits (70), Expect = 1.3
Identities = 22/176 (12%), Positives = 58/176 (32%), Gaps = 59/176 (33%)
Query: 441 GQKLRDTFTWNKNETLITPEQFAEVLCDDLD--------------LN------PLLFVPA 480
G+++R+ ++ ET++ + E + +++ L+ P L +
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 481 IA--QSIRQQT-----------------------DAFPAENLLDEVH-----DQRVVIKL 510
A + ++ + D E+L++ V Q V +
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 511 NIHVGNTSLV----DQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQ 562
+ N ++ ++ S++ + + R+ G V + Y++ Q
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQE--ALQYVVERVGKR---TGWLVEIVNYNVENQ 1851
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 5e-10
Identities = 97/679 (14%), Positives = 173/679 (25%), Gaps = 220/679 (32%)
Query: 1 MSVRTYGDKPISFQIEEN--GDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKR 58
Y K I E+ +F C K + + +S EE
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDC-----------------KDVQDMPKSILSKEEIDH 53
Query: 59 LLDTAGINSHCLASSVTLLKVSE------VEDILEGNDEKYK--AVSIHTEPLVPRESKT 110
++ + S L TLL E VE++L N YK I TE P T
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQP-SMMT 109
Query: 111 KKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQ-KKVRTFPLCFDDTDPSCIFENASHTEV 169
+ + L N N +R+ K+R + E V
Sbjct: 110 RMYIEQRDRLYND-----NQVFAKYNVSRLQPYLKLRQ-----------ALLELRPAKNV 153
Query: 170 LVPIRLDMEIEGQK-----------LRD-TFTWNKNGTVF--SF---CSLETLITPEQFA 212
L+ +G + +F + S ET++ Q
Sbjct: 154 LI--------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-- 203
Query: 213 EVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLV-DQ 271
L +D N + +I+ + + + L R ++K + N LV
Sbjct: 204 -KLLYQIDPN-WTSRSDHSSNIKLRIHS--IQAEL------RRLLKSKPYE-NCLLVLLN 252
Query: 272 IEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEA 331
+ + + F + C L +T + LS T+ +
Sbjct: 253 V-QN----AKAWNAFNLS-CKIL------LTTRFKQVTDFLSAATTTHISLD-------- 292
Query: 332 PFRSHSESDQWSPFLETLTDAEMEK---KIRDQDRNTRESKTKKAVPWAPSL------PN 382
TLT E++ K D + P S+
Sbjct: 293 ------------HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 383 SSHLDAVPQATPVNRNRVNQKKV-RTFPLCFDDTDPS---------CIFENASHTEVLVP 432
+ D N VN K+ + +P+ +F +P
Sbjct: 341 LATWD--------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP----SAHIP 388
Query: 433 IRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLN-----PLLFVPAIAQSIRQ 487
L + + W L + + +P+I ++
Sbjct: 389 TIL-LSL---------IWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 488 QTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGL 547
+ + +H + +V NI D D+
Sbjct: 438 KLEN------EYALH-RSIVDHYNIPKT----FDS--DDLIPPYLD-------------- 470
Query: 548 GGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAE-ME 606
F + I + H ++ ++ + F D +E
Sbjct: 471 -QYFYSHIGH--------H-----------------LKNIEHPERMTLFRMVFLDFRFLE 504
Query: 607 KKIRDQDRNTRRMRRLANT 625
+KIR + NT
Sbjct: 505 QKIRHDSTAWNASGSILNT 523
Score = 59.5 bits (143), Expect = 3e-09
Identities = 84/577 (14%), Positives = 158/577 (27%), Gaps = 183/577 (31%)
Query: 76 LLKVSEVEDILEGNDEKYKAVSIHTEPLVPRESKTKKAV--------PW----------A 117
+L E++ I+ D + + L +E +K V +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 118 PSLPNSSHLDA-------VPQATPVNRNRVNQ-KKVRTFPLCFDDTDPSCIFENASHTEV 169
PS+ +++ N +R+ K+R + E V
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-----------ALLELRPAKNV 153
Query: 170 LVPIRLDMEIEGQK-----------LRD-TFTWNKNGTVF--SF---CSLETLITPEQFA 212
L+ +G + +F + S ET++ Q
Sbjct: 154 LI--------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-- 203
Query: 213 EVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAE--NL------------LDEVHDQRVVIK 258
L +D N + +I+ + + AE L L V + +
Sbjct: 204 -KLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 259 LNIHV------GNTSLVDQIEWDMSEKENSAEKFAVRLCTE--LGLGGEFVTAIAYSIRG 310
N+ + D + + S + ++ L + L +++ +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 311 QLSWHQRTYAFSEAPLPV--VEAPFRSH-SESDQW------------SPFLETLTDAEME 355
+ + P + + R + D W L L AE
Sbjct: 321 E--------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 356 K------------KI--------------RDQDRNTRESKTKKAV-----PWAPSLPNSS 384
K I D + V S+P S
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SI 431
Query: 385 HLDAVPQATPVNRNRVNQKKVR--TFPLCFDDTDPSC------IF-------ENASHTEV 429
+L+ + N +++ V P FD D + +N H E
Sbjct: 432 YLELKVKLE--NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 430 LVPIR---LDMEIEGQKLR-DTFTWNK----NETLITPEQFAEVLCDDLD-----LNPLL 476
+ R LD QK+R D+ WN TL + + +CD+ +N +L
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 477 -FVPAIAQ--------SIRQQTDAFPAENLLDEVHDQ 504
F+P I + + + E + +E H Q
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold,
farnesyl diphosphate, metal-binding, lyase, magnesium;
HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A
3lgk_A 3lg5_A*
Length = 382
Score = 30.1 bits (67), Expect = 2.4
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 268 LVDQIEWDMSEKENSAEKFAVRLCTELGLGGE-------FVTAIAYSIRGQLSWHQRT-- 318
V++ + E A +FA L G E V + +H +
Sbjct: 300 RVEECITEFLAVERDALRFADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFHHESGR 359
Query: 319 YAFSEAPLPVVEAPF 333
Y ++ P+
Sbjct: 360 Y-MVDSWDDRSTPPY 373
Score = 30.1 bits (67), Expect = 2.4
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 519 LVDQIEWDMSEKENSAEKFAVRLCTELGLGGE-------FVTAIAYSIRGQLSWHQRT-- 569
V++ + E A +FA L G E V + +H +
Sbjct: 300 RVEECITEFLAVERDALRFADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFHHESGR 359
Query: 570 YAFSEAPLPVVEAPF 584
Y ++ P+
Sbjct: 360 Y-MVDSWDDRSTPPY 373
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium,
SGC, nucleus, transcription, transcription regulation,
chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo
sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A
3mew_A
Length = 180
Score = 28.8 bits (64), Expect = 3.8
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 81 EVEDILEGNDEKYKAVSIHTEPLVPRESKTKKAVPWAPSLPNSSHLDAVPQAT---PVNR 137
EV+DI E E++ PL P+ + P A L PQ T
Sbjct: 80 EVDDIDEEGKERHTLSRRRVIPL-PQWKANPETDPEALFQKEQLVLALYPQTTCFYRALI 138
Query: 138 NRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRL 175
+ Q+ + + F+DT + + + V R
Sbjct: 139 HAPPQRPQDDYSVLFEDTS----YADGYSPPLNVAQRY 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,311,266
Number of extensions: 557098
Number of successful extensions: 1168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1160
Number of HSP's successfully gapped: 19
Length of query: 629
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 530
Effective length of database: 3,937,614
Effective search space: 2086935420
Effective search space used: 2086935420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.2 bits)