RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13560
         (629 letters)



>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 225

 Score = 28.5 bits (63), Expect = 2.0
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 242 PAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEW 274
           PA+  L ++  +  V+ L+ HV      + + W
Sbjct: 22  PADEALRKMIQKGDVVGLSYHVD---YWNYLGW 51



 Score = 28.5 bits (63), Expect = 2.0
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 493 PAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEW 525
           PA+  L ++  +  V+ L+ HV      + + W
Sbjct: 22  PADEALRKMIQKGDVVGLSYHVD---YWNYLGW 51


>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
           H2A.Z [TaxId: 9606]}
          Length = 103

 Score = 27.1 bits (60), Expect = 2.6
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 443 KLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQ 483
           +L    + +     ITP      +  D +L+ L+    IA 
Sbjct: 52  ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAG 91


>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium
           sporotrichioides [TaxId: 5514]}
          Length = 354

 Score = 27.6 bits (61), Expect = 4.6
 Identities = 14/110 (12%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 211 FAEVLCDDLDLNPLLF--VPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSL 268
           + +   ++  L   +   +  +   +    D        D+  DQ  ++K  +     SL
Sbjct: 196 WPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISL 255

Query: 269 VDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRT 318
            + +E    +  +S+++       +     + +  I   + G ++WH   
Sbjct: 256 HEALEKLTQDTLHSSKQMVAVFSDKDP---QVMDTIECFMHGYVTWHLCD 302



 Score = 27.6 bits (61), Expect = 4.6
 Identities = 14/110 (12%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 462 FAEVLCDDLDLNPLLF--VPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSL 519
           + +   ++  L   +   +  +   +    D        D+  DQ  ++K  +     SL
Sbjct: 196 WPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISL 255

Query: 520 VDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRT 569
            + +E    +  +S+++       +     + +  I   + G ++WH   
Sbjct: 256 HEALEKLTQDTLHSSKQMVAVFSDKDP---QVMDTIECFMHGYVTWHLCD 302


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,258,055
Number of extensions: 104961
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 7
Length of query: 629
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 538
Effective length of database: 1,158,166
Effective search space: 623093308
Effective search space used: 623093308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)