BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13561
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W0Y8|SCN60_DROME Sodium channel protein 60E OS=Drosophila melanogaster GN=NaCP60E
PE=2 SV=5
Length = 2821
Score = 154 bits (388), Expect = 2e-37, Method: Composition-based stats.
Identities = 85/107 (79%), Positives = 92/107 (85%), Gaps = 8/107 (7%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
MALS D+F CGWNIFDL++VTASL+D++ E VDGLSVLRGLRL SWTTMKVLL
Sbjct: 740 MALSKDFFLCGWNIFDLLIVTASLLDIIFELVDGLSVLRGLRLLRVLKLAQSWTTMKVLL 799
Query: 53 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
SIIISTIGALGNLT +LVIVIYIFAVIGMQLFSKDYT EKF PDPVP
Sbjct: 800 SIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTPEKFDPDPVP 846
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL-----------SWTTMKVLLSII 55
YF W I D I+V S+ L+ E + L VLR LR W M+++++ +
Sbjct: 1789 YFTSFWTILDFIIVFVSVFSLLIEENENLKVLRSLRTLRALRPLRAISRWQGMRIVVNAL 1848
Query: 56 ISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ I ++ N+ V ++ IF+++G+Q F +
Sbjct: 1849 MYAIPSIFNVLLVCLVFWLIFSIMGVQFFGGKF 1881
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRL-----------S 44
+ L YF WN+FD ++V AS+ D+M + ++LR +R+ +
Sbjct: 2097 VGLRYHYFTVPWNVFDFLLVLASIFGILMEDIMIDLPISPTLLRVVRVFRIGRILRLIKA 2156
Query: 45 WTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
++ LL ++ ++ AL N+ +L ++ +I+A++GM LF
Sbjct: 2157 AKGIRKLLFALVVSLPALFNIGALLGLITFIYAILGMSLF 2196
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--VDGLSVLRGLRLSWTT-----MKVLLSIIISTI 59
Y + WN D +V+T+ + E + GL R LR T +K +++ ++ +
Sbjct: 180 YLRNPWNWLDFVVITSGYATIGMEVGNLAGLRTFRVLRALKTVSIMPGLKTIINALLHSF 239
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLF 84
L + + + + +FA+ +Q++
Sbjct: 240 RQLAEVMTLTIFCLMVFALFALQVY 264
>sp|Q20JQ7|SC4AB_DANRE Sodium channel protein type 4 subunit alpha B OS=Danio rerio
GN=scn4ab PE=2 SV=1
Length = 1784
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 8/91 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+VT SLV+LM V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 627 YFQVGWNIFDSIIVTMSLVELMLADVEGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNS 686
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYT 89
+GALGNLT VL I+++IFAV+GMQLF K YT
Sbjct: 687 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYT 717
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTAS-----LVDLMTEFVDGLSVLRGLRLSW----------- 45
AL YF GWNIFD +VV S L DL+ ++ ++ R +RL+
Sbjct: 1349 ALRYHYFSIGWNIFDFVVVILSILGIGLADLIEKYFVSPTLFRVIRLARIGRVLRLIRGA 1408
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L ++++IF++ GM F+
Sbjct: 1409 KGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFA 1448
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D +V++ + +TEFVD +S LR R+ +K ++ +I ++
Sbjct: 192 WNWLDFMVISMAY---LTEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKK 248
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 249 LADVMILTVFCLSVFALIGLQLF 271
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLL- 52
YF W D ++V SL+ L + L LR LR + M+V++
Sbjct: 1033 YFTNAWCWLDFLIVDVSLISLTANILGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVV 1092
Query: 53 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ ++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1093 NALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKF 1128
>sp|Q62205|SCN9A_MOUSE Sodium channel protein type 9 subunit alpha OS=Mus musculus
GN=Scn9a PE=1 SV=2
Length = 1984
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 66/93 (70%), Gaps = 8/93 (8%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
+YFQ GWNIFD ++VT SLV+L V+GLSVLR RL SW T+ +L+ II +
Sbjct: 801 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 860
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 861 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 893
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW---------- 45
++L + YF GWNIFD +VV S+V +++ ++ ++ R +RL+
Sbjct: 1565 ISLRHYYFTVGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKG 1624
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1625 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1665
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V SLV L+ + L LR LR + M+V+++
Sbjct: 1251 YFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVN 1310
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+I I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1311 ALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1345
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D +V+ + +TEFV+ +S LR R+ +K ++ +I ++
Sbjct: 188 WNWLDFVVIVFAY---LTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 244
Query: 62 LGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPD 96
L ++ + V + +FA+IG+QLF + + F D
Sbjct: 245 LSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRKD 279
>sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens
GN=SCN9A PE=1 SV=3
Length = 1988
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 66/93 (70%), Gaps = 8/93 (8%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
+YFQ GWNIFD ++VT SLV+L V+GLSVLR RL SW T+ +L+ II +
Sbjct: 802 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 861
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 862 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 894
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW---------- 45
++L + YF GWNIFD +VV S+V DL+ + ++ R +RL+
Sbjct: 1567 ISLRHYYFTVGWNIFDFVVVIISIVGMFLADLIETYFVSPTLFRVIRLARIGRILRLVKG 1626
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1627 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1667
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V SLV L+ + L LR LR + M+V+++
Sbjct: 1253 YFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVN 1312
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+I I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1313 ALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1347
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D +V+ + +TEFV+ +S LR R+ +K ++ +I ++
Sbjct: 188 WNWLDFVVIVFAY---LTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 244
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 245 LSDVMILTVFCLSVFALIGLQLF 267
>sp|Q2XVR5|SC4AA_TETNG Sodium channel protein type 4 subunit alpha A OS=Tetraodon
nigroviridis GN=scn4aa PE=3 SV=2
Length = 1863
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 64/90 (71%), Gaps = 8/90 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+VT SLV+L V GLSVLR RL SW T+ +L+ II S+
Sbjct: 651 YFQVGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGSS 710
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 711 VGALGNLTLVLAIIVFIFAVVGMQLFGKSY 740
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTAS-----LVDLMTEFVDGLSVLRGLRLSW---------- 45
+AL +F GWNIFD +VV S L DL+ ++ ++ R +RL+
Sbjct: 1425 IALRQYFFTNGWNIFDFVVVILSIAGTMLSDLIEKYFVSPTLFRVIRLARIGRILRLIKG 1484
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L ++++IF++ GM F+
Sbjct: 1485 ARGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFA 1525
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D +V SL+ L + L LR LR + M+V+++
Sbjct: 1111 YFTNAWCWLDFFIVDISLISLSANLMGLSDLGPIKSLRTLRALRPLRALSRFEGMRVVVN 1170
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+I I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1171 ALIGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKF 1205
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRL-----SWTTMKVLLSIIISTIGALGN 64
WN D +V++ + + TEFVD +S LR R+ + T + L +I+ + I ++
Sbjct: 183 WNWLDFMVISMAYI---TEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQSVKK 239
Query: 65 LTFVLVIVIY---IFAVIGMQLF 84
+ V+++ ++ +FA++G+QLF
Sbjct: 240 MVDVMILTVFALSVFALVGLQLF 262
>sp|O08562|SCN9A_RAT Sodium channel protein type 9 subunit alpha OS=Rattus norvegicus
GN=Scn9a PE=1 SV=1
Length = 1984
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 8/93 (8%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
+YFQ GWNIFD ++VT SL++L V+GLSVLR RL SW T+ +L+ II +
Sbjct: 801 EYFQVGWNIFDSLIVTLSLIELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 860
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 861 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 893
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW---------- 45
++L + YF GWNIFD +VV S+V +++ ++ ++ R +RL+
Sbjct: 1565 ISLRHYYFTVGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKG 1624
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1625 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1665
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V SLV L+ + L LR LR + M+V+++
Sbjct: 1251 YFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVN 1310
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+I I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1311 ALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1345
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D +V+ + +TEFV+ +S LR R+ +K ++ +I ++
Sbjct: 188 WNWLDFVVIVFAY---LTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 244
Query: 62 LGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPD 96
L ++ + V + +FA+IG+QLF + + F +
Sbjct: 245 LSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRKE 279
>sp|Q2XVR4|SC4AB_TETNG Sodium channel protein type 4 subunit alpha B OS=Tetraodon
nigroviridis GN=scn4ab PE=3 SV=1
Length = 1715
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 65/90 (72%), Gaps = 8/90 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+VT SLV+L V GLSVLR RL SW T+ +L+ II ++
Sbjct: 574 YFQVGWNIFDSIIVTMSLVELGLANVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNS 633
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+GALGNLT VL I+++IFAV+GMQLF K+Y
Sbjct: 634 VGALGNLTLVLAIIVFIFAVVGMQLFGKNY 663
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTAS-----LVDLMTEFVDGLSVLRGLRLSW---------- 45
+AL YF GWN+FD +VV S L D++ ++ ++ R +RL+
Sbjct: 1290 IALRRHYFSIGWNVFDFVVVILSILGLLLADIIEKYFVSPTLFRVIRLARIGRVLRLIRG 1349
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L ++++IF++ GM F+
Sbjct: 1350 AKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFA 1390
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLR-----LSWTTMKVLLS 53
YF W D ++V SLV L + L LR LR + M+V+++
Sbjct: 975 YFSNAWCWLDFLIVDVSLVSLTANILGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1034
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYT 89
++ + ++ N+ V +I IF+++G+ LF+ ++
Sbjct: 1035 ALVGAVPSIFNVLLVCLIFWLIFSIMGVNLFAGKFS 1070
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D +V++ + +TE VD +SVLR R+ +K ++ +I ++
Sbjct: 188 WNWLDFMVISMAY---LTELVDLGNVSVLRTFRVLRALKTITVIPGLKTIVGALIQSVKK 244
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L + + V + +FA+IG+QLF
Sbjct: 245 LADAMVLTVFCLSVFALIGLQLF 267
>sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha OS=Homo sapiens
GN=SCN4A PE=1 SV=4
Length = 1836
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 65/93 (69%), Gaps = 8/93 (8%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
+YFQ GWNIFD I+VT SLV+L V GLSVLR RL SW T+ +L+ II +
Sbjct: 636 EYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 695
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 696 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 728
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW---------- 45
+AL YF GWNIFD +VV S+V DL+ ++ ++ R +RL+
Sbjct: 1405 LALRQYYFTVGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRVIRLARIGRVLRLIRG 1464
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+++ GM F+
Sbjct: 1465 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFA 1505
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 20/107 (18%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V S++ L+ + + L LR LR + M+V+++
Sbjct: 1092 YFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVN 1151
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY-------TSEKF 93
++ I ++ N+ V +I IF+++G+ LF+ + TSE+F
Sbjct: 1152 ALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCINTTTSERF 1198
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+ ++ +TEFVD +S LR R+ +K ++ +I ++
Sbjct: 193 WNWLDFSVI---MMAYLTEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKK 249
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA++G+QLF
Sbjct: 250 LSDVMILTVFCLSVFALVGLQLF 272
>sp|Q2XVR6|SC4AB_TAKRU Sodium channel protein type 4 subunit alpha B OS=Takifugu rubripes
GN=scn4ab PE=3 SV=1
Length = 1719
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 65/90 (72%), Gaps = 8/90 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+VT SLV+L V GLSVLR RL SW T+ +L+ II ++
Sbjct: 572 YFQVGWNIFDSIIVTISLVELGLANVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNS 631
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+GALGNLT VL I+++IFAV+GMQLF K+Y
Sbjct: 632 VGALGNLTLVLAIIVFIFAVVGMQLFGKNY 661
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTAS-----LVDLMTEFVDGLSVLRGLRLSW---------- 45
+AL YF GWNIFD +VV S L D++ ++ ++ R +RL+
Sbjct: 1294 IALRRHYFSIGWNIFDFVVVILSILGLLLADIIEKYFVSPTLFRVIRLARIGRVLRLIRG 1353
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L ++++IF++ GM F+
Sbjct: 1354 AKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFA 1394
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLR-----LSWTTMKVLLS 53
YF W D ++V SLV L + L LR LR + M+V+++
Sbjct: 979 YFSNAWCWLDFLIVDVSLVSLTANILGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1038
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYT 89
++ + ++ N+ V +I IF+++G+ LF+ ++
Sbjct: 1039 ALVGAVPSIFNVLLVCLIFWLIFSIMGVNLFAGKFS 1074
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D +V++ + +TE VD +SVLR R+ +K ++ +I ++
Sbjct: 188 WNWLDFMVISMAY---LTELVDLGNVSVLRTFRVLRALKTITVIPGLKTIVGALIQSVRK 244
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L + + V + +FA+IG+QLF
Sbjct: 245 LADAMVLTVFCLSVFALIGLQLF 267
>sp|Q05973|SCN1_LOLBL Sodium channel protein 1 brain OS=Loligo bleekeri PE=2 SV=1
Length = 1522
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 77/107 (71%), Gaps = 8/107 (7%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
+A + YF+ GWNI DL+VV ASL+DL E + G+SV R RL SWTTM++LL
Sbjct: 463 LAFNKQYFKSGWNICDLVVVVASLIDLGVEGLKGVSVFRSFRLLRVFHLAQSWTTMRLLL 522
Query: 53 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
II++T+G+LG LT +L+IVIYIFAV G+QLF +YT +KF +PVP
Sbjct: 523 CIILNTLGSLGYLTIILIIVIYIFAVTGLQLFHTEYTPDKFRGEPVP 569
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 17/103 (16%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLVD--LMTEFVDGL----SVLRGLRL----------S 44
+ L Y + WN+FD +VVT S++D L F DG+ S+LR R+
Sbjct: 1153 IGLRIHYLRNLWNVFDFLVVTLSVMDAFLNDIFGDGIFMNPSLLRVARMFRIGRIIRLIK 1212
Query: 45 WTT-MKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSK 86
W M+ LL ++ ++ AL N+ +L++V++I+ +IGM F +
Sbjct: 1213 WAKGMRKLLFALVISLPALFNIGALLMLVMFIYTIIGMSSFGQ 1255
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMT-----EFVDGLSVLRGLRL--------SWTTMKVLL 52
Y+ W I D +V +++ L E + LR LR W MK+++
Sbjct: 842 HYYTHFWTILDFTIVIITVISLAASGLGMEQITAFRSLRTLRALRPLRAVSRWQGMKIIV 901
Query: 53 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ ++ +I ++ N+ V V+ IFA++G+QLF+ +
Sbjct: 902 NALMLSIPSIFNVLLVCVVFWLIFAIMGVQLFAGKF 937
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVD--------GLSVLRGLRLSWT-----TMKVLLS 53
Y + WN D V+ S + L+ + ++ GL R LR T +K +++
Sbjct: 109 YLRDAWNCLDFTVIMISYITLLLQTINDKVISDITGLRTFRVLRALRTLSIIPGLKTMVN 168
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
++ + L ++ +++ ++IF+ G+QLF
Sbjct: 169 ALLRALRMLISVLILILFCLWIFSQAGVQLF 199
>sp|Q2XVR7|SC4AA_TAKRU Sodium channel protein type 4 subunit alpha A OS=Takifugu rubripes
GN=scn4aa PE=3 SV=1
Length = 1892
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 64/90 (71%), Gaps = 8/90 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+VT SLV+L V GLSVLR RL SW T+ +L+ II ++
Sbjct: 671 YFQVGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 730
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 731 VGALGNLTLVLAIIVFIFAVVGMQLFGKSY 760
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTAS-----LVDLMTEFVDGLSVLRGLRLSW----------- 45
AL + +F GWNIFD IVV S L D++ ++ ++ R +RL+
Sbjct: 1446 ALRHYFFTNGWNIFDFIVVILSIAGTMLSDIIEKYFVSPTLFRVIRLARIGRILRLIKGA 1505
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L ++++IF++ GM F+
Sbjct: 1506 RGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFA 1545
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D +V SL+ L + L LR LR + M+V+++
Sbjct: 1131 YFTNAWCWLDFFIVDISLISLSANLMGFSDLGPIKSLRTLRALRPLRALSRFEGMRVVVN 1190
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+I I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1191 ALIGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKF 1225
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRL-----SWTTMKVLLSIIISTIGALGN 64
WN D +V++ + + TEFVD +S LR R+ + T + L +I+ + I ++
Sbjct: 187 WNWLDFMVISMAYI---TEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQSVKK 243
Query: 65 LTFVLVIVIY---IFAVIGMQLF 84
+ V+++ ++ +FA++G+QLF
Sbjct: 244 MVDVMILTVFALAVFALVGLQLF 266
>sp|Q2XVR3|SC4AA_DANRE Sodium channel protein type 4 subunit alpha A OS=Danio rerio
GN=scn4aa PE=2 SV=2
Length = 1829
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 64/90 (71%), Gaps = 8/90 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+VT SLV+L V GLSVLR RL SW T+ +L+ II ++
Sbjct: 641 YFQVGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 700
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 701 VGALGNLTLVLAIIVFIFAVVGMQLFGKSY 730
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTAS-----LVDLMTEFVDGLSVLRGLRLSW----------- 45
AL +F GWN+FD +VV S L D++ ++ ++ R +RL+
Sbjct: 1372 ALRQYFFTIGWNVFDFVVVILSIAGLMLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGA 1431
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L ++++IF++ GM F+
Sbjct: 1432 KGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFA 1471
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V SLV L + L LR LR + M+V+++
Sbjct: 1058 YFTNAWCWLDFLIVDVSLVSLTANLMGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1117
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY------TSEKFAP 95
++ I ++ N+ V +I IF+++G+ LF+ + T+E+ P
Sbjct: 1118 ALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTTTEERIP 1165
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRL-----SWTTMKVLLSIIISTIGALGN 64
WN D +V++ + V TEFVD +S LR R+ + T + L +I+ + I ++
Sbjct: 186 WNWLDFMVISMAYV---TEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQSVKK 242
Query: 65 LTFVLVIVIY---IFAVIGMQLF 84
+ V+++ I+ +FA+IG+QLF
Sbjct: 243 MIDVMILTIFALAVFALIGLQLF 265
>sp|Q28644|SCN9A_RABIT Sodium channel protein type 9 subunit alpha OS=Oryctolagus
cuniculus GN=SCN9A PE=2 SV=1
Length = 1984
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 8/93 (8%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
+YFQ GWN+FD ++VT SLV+L V+GLSVLR RL SW T+ +L+ II +
Sbjct: 799 EYFQVGWNVFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 858
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
++G LGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 859 SVGPLGNLTLVLAIIVFIFAVVGMQLFGKSYKE 891
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW---------- 45
++L + YF GWNIFD +VV S+V +L+ + ++ R +RL+
Sbjct: 1564 ISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIETYFVSPTLFRVIRLARIGRILRLIKG 1623
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1624 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1664
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V SLV L+ + L LR LR + M+V+++
Sbjct: 1250 YFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVN 1309
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+I I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1310 ALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1344
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D IV+ + +TEFV+ +S LR R+ +K ++ +I ++
Sbjct: 188 WNWLDFIVIVFAY---LTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 244
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 245 LSDVIILTVFCLSVFALIGLQLF 267
>sp|P15390|SCN4A_RAT Sodium channel protein type 4 subunit alpha OS=Rattus norvegicus
GN=Scn4a PE=2 SV=1
Length = 1840
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 64/93 (68%), Gaps = 8/93 (8%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
+YFQ GWNIFD +VT SLV+L V GLSVLR RL SW T+ +L+ II +
Sbjct: 630 EYFQQGWNIFDSFIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 689
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 690 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 722
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
AL + YF GWNIFD +VV S+V DL+ ++ ++ R +RL+
Sbjct: 1399 ALRHYYFTIGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRVIRLARIGRVLRLIRGA 1458
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+++ GM F+
Sbjct: 1459 KGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFA 1498
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 20/107 (18%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V S++ L+ + + L LR LR + M+V+++
Sbjct: 1085 YFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVN 1144
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY-------TSEKF 93
++ I ++ N+ V +I IF+++G+ LF+ + TSE+F
Sbjct: 1145 ALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTTSERF 1191
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+T + V TEFVD +S LR R+ +K ++ +I ++
Sbjct: 193 WNWLDFSVITMAYV---TEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKK 249
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA++G+QLF
Sbjct: 250 LSDVMILTVFCLSVFALVGLQLF 272
>sp|Q9ER60|SCN4A_MOUSE Sodium channel protein type 4 subunit alpha OS=Mus musculus
GN=Scn4a PE=2 SV=1
Length = 1841
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 64/93 (68%), Gaps = 8/93 (8%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
+YFQ GWNIFD +VT SLV+L V GLSVLR RL SW T+ +L+ II +
Sbjct: 630 EYFQQGWNIFDSFIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 689
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 690 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 722
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
AL + YF GWNIFD +VV S+V DL+ ++ ++ R +RL+
Sbjct: 1400 ALRHYYFTIGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRVIRLARIGRVLRLIRGA 1459
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+++ GM F+
Sbjct: 1460 KGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFA 1499
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 20/107 (18%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V S++ L+ + + L LR LR + M+V+++
Sbjct: 1086 YFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVN 1145
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY-------TSEKF 93
++ I ++ N+ V +I IF+++G+ LF+ + TSE+F
Sbjct: 1146 ALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCINTTTSERF 1192
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+T + V TEFVD +S LR R+ +K ++ +I ++
Sbjct: 193 WNWLDFSVITMAYV---TEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKK 249
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA++G+QLF
Sbjct: 250 LSDVMILTVFCLSVFALVGLQLF 272
>sp|P35500|SCNA_DROME Sodium channel protein para OS=Drosophila melanogaster GN=para PE=2
SV=3
Length = 2131
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 71/101 (70%), Gaps = 9/101 (8%)
Query: 1 MALSNDY-FQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVL 51
MA+S Y FQ GWNIFD I+V SL++L E V GLSVLR RL SW T+ +L
Sbjct: 870 MAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLL 929
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEK 92
+SI+ T+GALGNLTFVL I+I+IFAV+GMQLF K+Y K
Sbjct: 930 ISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHK 970
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDG-----------LSVLRGLRL--SWTTMKVLLS 53
YF W D ++V SL++ + V L LR LR M+V+++
Sbjct: 1362 YFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVN 1421
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IFA++G+QLF+ Y
Sbjct: 1422 ALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKY 1456
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 16/99 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTAS-----LVDLMTEFVDGLSVLRGLRLSW----------- 45
AL YF WN+FD++VV S L D++ ++ ++LR +R++
Sbjct: 1672 ALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGA 1731
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
++ LL + ++ AL N+ +L +V++IFA+ GM F
Sbjct: 1732 KGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFF 1770
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKV-----LLSIIISTIGA 61
Y + WN D +V+ + V + + + L+ LR R+ V L +I+ + I +
Sbjct: 209 YLRDAWNWLDFVVIALAYVTMGID-LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIES 267
Query: 62 LGNLTFVLVIVIY---IFAVIGMQLF 84
+ NL V+++ ++ +FA++G+Q++
Sbjct: 268 VKNLRDVIILTMFSLSVFALMGLQIY 293
>sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha OS=Rattus norvegicus
GN=Scn1a PE=2 SV=1
Length = 2009
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 8/90 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD +VT SLV+L V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 827 YFQEGWNIFDGFIVTLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 886
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 887 VGALGNLTLVLAIIVFIFAVVGMQLFGKSY 916
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW---------- 45
++L + YF GWNIFD +VV S+V +L+ ++ ++ R +RL+
Sbjct: 1593 ISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKG 1652
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1653 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1693
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+T + V TEFVD +S LR R+ +K ++ +I ++
Sbjct: 190 WNWLDFTVITFAYV---TEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 246
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 247 LSDVMILTVFCLSVFALIGLQLF 269
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLR-----LSWTTMKVLLS 53
YF W D ++V SLV L + L LR LR + M+V+++
Sbjct: 1279 YFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1338
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1339 ALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1373
>sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alpha OS=Homo sapiens
GN=SCN1A PE=1 SV=2
Length = 2009
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 8/90 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD +VT SLV+L V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 827 YFQEGWNIFDGFIVTLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 886
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 887 VGALGNLTLVLAIIVFIFAVVGMQLFGKSY 916
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW---------- 45
++L + YF GWNIFD +VV S+V +L+ ++ ++ R +RL+
Sbjct: 1593 ISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKG 1652
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1653 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1693
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+T + V TEFVD +S LR R+ +K ++ +I ++
Sbjct: 190 WNWLDFTVITFAYV---TEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 246
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 247 LSDVMILTVFCLSVFALIGLQLF 269
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLR-----LSWTTMKVLLS 53
YF W D ++V SLV L + L LR LR + M+V+++
Sbjct: 1279 YFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1338
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1339 ALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1373
>sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha OS=Homo sapiens
GN=SCN3A PE=1 SV=2
Length = 2000
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 65/92 (70%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+V+ SL++L V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 819 YFQEGWNIFDGIIVSLSLMELGLSNVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 878
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 879 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 910
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
+L + YF GWNIFD +VV S+V +++ ++ ++ R +RL+
Sbjct: 1579 SLRHYYFTIGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGA 1638
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1639 KGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1678
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLR-----LSWTTMKVLLS 53
YF W D ++V SLV L+ + L LR LR + M+V+++
Sbjct: 1267 YFTNAWCWLDFLIVDVSLVSLVANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1326
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1327 ALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1361
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+ + V TEFV +S LR R+ +K ++ +I ++
Sbjct: 190 WNWLDFSVIVMAYV---TEFVSLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 246
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 247 LSDVMILTVFCLSVFALIGLQLF 269
>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha OS=Rattus norvegicus
GN=Scn3a PE=1 SV=1
Length = 1951
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 65/92 (70%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+V+ SL++L V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 770 YFQEGWNIFDGIIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 829
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 830 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 861
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 16/95 (16%)
Query: 7 YFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW-----------TTMKV 50
YF GWNIFD +VV S+V +L+ ++ ++ R +RL+ ++
Sbjct: 1535 YFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRT 1594
Query: 51 LLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1595 LLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1629
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLR-----LSWTTMKVLLS 53
YF W D ++V SLV L+ + L LR LR + M+V+++
Sbjct: 1218 YFTNAWCWLDFLIVDVSLVSLVANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1277
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1278 ALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1312
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+ + V TEFVD +S LR R+ +K ++ +I ++
Sbjct: 190 WNWLDFSVIVMAYV---TEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 246
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 247 LSDVMILTVFCLSVFALIGLQLF 269
>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus
GN=Scn2a PE=1 SV=1
Length = 2005
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD +V+ SL++L V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 818 YFQEGWNIFDGFIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 877
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 878 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 909
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW---------- 45
++L + YF GWNIFD +VV S+V +L+ ++ ++ R +RL+
Sbjct: 1583 ISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKG 1642
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1643 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1683
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+T + V TEFV+ +S LR R+ +K ++ +I ++
Sbjct: 191 WNWLDFTVITFAYV---TEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 247
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 248 LSDVMILTVFCLSVFALIGLQLF 270
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLR-----LSWTTMKVLLS 53
YF W D ++V SLV L + L LR LR + M+V+++
Sbjct: 1269 YFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1328
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1329 ALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1363
>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha OS=Homo sapiens
GN=SCN2A PE=1 SV=3
Length = 2005
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD +V+ SL++L V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 818 YFQEGWNIFDGFIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 877
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 878 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 909
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 16/95 (16%)
Query: 7 YFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW-----------TTMKV 50
YF GWNIFD +VV S+V +L+ ++ ++ R +RL+ ++
Sbjct: 1589 YFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRT 1648
Query: 51 LLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
LL ++ ++ AL N+ +L +V++I+A+ GM F+
Sbjct: 1649 LLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA 1683
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+T + V TEFVD +S LR R+ +K ++ +I ++
Sbjct: 191 WNWLDFTVITFAYV---TEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 247
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 248 LSDVMILTVFCLSVFALIGLQLF 270
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLR-----LSWTTMKVLLS 53
YF W D ++V SLV L + L LR LR + M+V+++
Sbjct: 1269 YFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1328
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1329 ALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1363
>sp|O88420|SCN8A_RAT Sodium channel protein type 8 subunit alpha OS=Rattus norvegicus
GN=Scn8a PE=1 SV=1
Length = 1978
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD +V+ SL++L V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 810 YFQEGWNIFDGFIVSLSLMELSLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 869
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 870 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 901
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
AL + YF GWNIFD +VV S+V D++ ++ ++ R +RL+
Sbjct: 1573 ALRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGA 1632
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++IF++ GM F+
Sbjct: 1633 KGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFA 1672
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
+F W D ++V SLV L+ + L LR LR + M+V+++
Sbjct: 1257 FFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1316
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IF+++G+ LF+ Y
Sbjct: 1317 ALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKY 1351
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+ + V TEFVD +S LR R+ +K ++ +I ++
Sbjct: 194 WNWLDFSVIMMAYV---TEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 250
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 251 LSDVMILTVFCLSVFALIGLQLF 273
>sp|Q9UQD0|SCN8A_HUMAN Sodium channel protein type 8 subunit alpha OS=Homo sapiens
GN=SCN8A PE=1 SV=1
Length = 1980
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD +V+ SL++L V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 812 YFQEGWNIFDGFIVSLSLMELSLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 871
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 872 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 903
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
AL + YF GWNIFD +VV S+V D++ ++ ++ R +RL+
Sbjct: 1575 ALRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGA 1634
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++IF++ GM F+
Sbjct: 1635 KGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFA 1674
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
+F W D ++V SLV L+ + L LR LR + M+V+++
Sbjct: 1259 FFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1318
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IF+++G+ LF+ Y
Sbjct: 1319 ALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKY 1353
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+ ++ +TEFV+ +S LR R+ +K ++ +I ++
Sbjct: 194 WNWLDFSVI---MMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 250
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 251 LSDVMILTVFCLSVFALIGLQLF 273
>sp|Q9WTU3|SCN8A_MOUSE Sodium channel protein type 8 subunit alpha OS=Mus musculus
GN=Scn8a PE=1 SV=1
Length = 1978
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD +V+ SL++L V+GLSVLR RL SW T+ +L+ II ++
Sbjct: 810 YFQEGWNIFDGFIVSLSLMELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS 869
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 870 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 901
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
AL + YF GWNIFD +VV S+V D++ ++ ++ R +RL+
Sbjct: 1573 ALRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGA 1632
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++IF++ GM F+
Sbjct: 1633 KGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFA 1672
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
+F W D ++V SLV L+ + L LR LR + M+V+++
Sbjct: 1257 FFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVN 1316
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V +I IF+++G+ LF+ Y
Sbjct: 1317 ALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKY 1351
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+ + V TEFVD +S LR R+ +K ++ +I ++
Sbjct: 194 WNWLDFSVIMMAYV---TEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKK 250
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 251 LSDVMILTVFCLSVFALIGLQLF 273
>sp|Q14524|SCN5A_HUMAN Sodium channel protein type 5 subunit alpha OS=Homo sapiens
GN=SCN5A PE=1 SV=2
Length = 2016
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+V SL++L + LSVLR RL SW T+ L+ II ++
Sbjct: 776 YFQQGWNIFDSIIVILSLMELGLSRMSNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNS 835
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K+Y+
Sbjct: 836 VGALGNLTLVLAIIVFIFAVVGMQLFGKNYSE 867
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
AL + YF WNIFD +VV S+V D++ ++ ++ R +RL+
Sbjct: 1581 ALRHYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGA 1640
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+++ GM F+
Sbjct: 1641 KGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFA 1680
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 5 NDYFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVL 51
YF W D ++V SLV L+ + L LR LR + M+V+
Sbjct: 1264 KKYFTNAWCWLDFLIVDVSLVSLVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVV 1323
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ ++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1324 VNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1360
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSW--------TTMKVLLSIIISTIGA 61
WN D V+ ++ TEFVD +S LR R+ + +K ++ +I ++
Sbjct: 193 WNWLDFSVI---IMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGALIQSVKK 249
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 250 LADVMVLTVFCLSVFALIGLQLF 272
>sp|Q9JJV9|SCN5A_MOUSE Sodium channel protein type 5 subunit alpha OS=Mus musculus
GN=Scn5a PE=1 SV=2
Length = 2019
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+V SL++L + LSVLR RL SW T+ L+ II ++
Sbjct: 776 YFQQGWNIFDSIIVILSLMELGLSRMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNS 835
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K+Y+
Sbjct: 836 VGALGNLTLVLAIIVFIFAVVGMQLFGKNYSE 867
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
AL + YF WNIFD +VV S+V D++ ++ ++ R +RL+
Sbjct: 1583 ALRHYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGA 1642
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+++ GM F+
Sbjct: 1643 KGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFA 1682
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 5 NDYFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVL 51
YF W D ++V SLV L+ + L LR LR + M+V+
Sbjct: 1266 KKYFTNAWCWLDFLIVDVSLVSLVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVV 1325
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ ++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1326 VNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1362
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSW--------TTMKVLLSIIISTIGA 61
WN D V+ + TEFVD +S LR R+ + +K ++ +I ++
Sbjct: 193 WNWLDFSVIVMAYT---TEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGALIQSVKK 249
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 250 LADVMVLTVFCLSVFALIGLQLF 272
>sp|P15389|SCN5A_RAT Sodium channel protein type 5 subunit alpha OS=Rattus norvegicus
GN=Scn5a PE=2 SV=1
Length = 2019
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD I+V SL++L + LSVLR RL SW T+ L+ II ++
Sbjct: 777 YFQQGWNIFDSIIVILSLMELGLSRMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNS 836
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFAV+GMQLF K+Y+
Sbjct: 837 VGALGNLTLVLAIIVFIFAVVGMQLFGKNYSE 868
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
AL + YF WNIFD +VV S+V D++ ++ ++ R +RL+
Sbjct: 1583 ALRHYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGA 1642
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L +V++I+++ GM F+
Sbjct: 1643 KGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFA 1682
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 5 NDYFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVL 51
YF W D ++V SLV L+ + L LR LR + M+V+
Sbjct: 1266 KKYFTNAWCWLDFLIVDVSLVSLVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVV 1325
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ ++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1326 VNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1362
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSW--------TTMKVLLSIIISTIGA 61
WN D V+ + TEFVD +S LR R+ + +K ++ +I ++
Sbjct: 194 WNWLDFSVIVMAYT---TEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGALIQSVKK 250
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA+IG+QLF
Sbjct: 251 LADVMVLTVFCLSVFALIGLQLF 273
>sp|Q62968|SCNAA_RAT Sodium channel protein type 10 subunit alpha OS=Rattus norvegicus
GN=Scn10a PE=1 SV=1
Length = 1956
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 62/94 (65%), Gaps = 8/94 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ WNIFD ++VT SL++L LSVLR RL SW T+ L+ II ++
Sbjct: 723 YFQKKWNIFDCVIVTVSLLELSASKKGSLSVLRTFRLLRVFKLAKSWPTLNTLIKIIGNS 782
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEK 92
+GALGNLTF+L I+++IFA++G QL S+DY K
Sbjct: 783 VGALGNLTFILAIIVFIFALVGKQLLSEDYGCRK 816
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--VDGLSVLRGLRLSWTT-----MKVLLSIIISTI 59
Y + WN D V+T + V + + GL R LR T +KV++ +I ++
Sbjct: 184 YLRDPWNWLDFSVITLAYVGAAIDLRGISGLRTFRVLRALKTVSVIPGLKVIVGALIHSV 243
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSE 91
L ++T + V + +FA++G+QLF + ++
Sbjct: 244 RKLADVTILTVFCLSVFALVGLQLFKGNLKNK 275
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 2 ALSNDYFQCGWNIFDLIVV---------TASLVDLMTEFVDGL----------SVLRGLR 42
AL YF GWN+FD IVV +A L L F L +LR +R
Sbjct: 1530 ALRQYYFTNGWNVFDFIVVILSIGSLLFSAILKSLENYFSPTLFRVIRLARIGRILRLIR 1589
Query: 43 LSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSK 86
+ ++ LL ++ ++ AL N+ +L +V++I+++ GM F+
Sbjct: 1590 AA-KGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMASFAN 1632
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMT---EFVD-----GLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V SL L+ E+ D L LR LR + M+V++
Sbjct: 1214 YFTNAWCWLDFLIVNISLTSLIAKILEYSDVASIKALRTLRALRPLRALSRFEGMRVVVD 1273
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
++ I ++ N+ V +I IF+++G+ LF+ ++
Sbjct: 1274 ALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFSK 1310
>sp|Q6QIY3|SCNAA_MOUSE Sodium channel protein type 10 subunit alpha OS=Mus musculus
GN=Scn10a PE=1 SV=2
Length = 1958
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 8/94 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ WNIFD ++VT SL++L T LSVLR RL SW T+ +L+ II ++
Sbjct: 723 YFQKKWNIFDCVIVTVSLLELSTSKKGSLSVLRTFRLLRVFKLAKSWPTLNMLIKIIGNS 782
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEK 92
+GALGNLTF+L I+++IFA++G QL S++Y +
Sbjct: 783 VGALGNLTFILAIIVFIFALVGKQLLSENYGCRR 816
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--VDGLSVLRGLRLSWTT-----MKVLLSIIISTI 59
Y + WN D V+T + V + + GL R LR T +KV++ +I ++
Sbjct: 184 YLRDPWNWLDFSVITLAYVGAAIDLRGISGLRTFRVLRALKTVSVIPGLKVIVGALIHSV 243
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSE--KFAPDP 97
L ++T + V + +FA++G+QLF + ++ K DP
Sbjct: 244 RKLADVTILTVFCLSVFALVGLQLFKGNLKNKCIKNGTDP 283
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLVDLM-------TEFVDGLSVLRGLRLSW--------- 45
AL YF GWN+FD IVV S+ L+ E ++LR +RL+
Sbjct: 1530 ALRQYYFTNGWNVFDFIVVILSISSLLFSAILSSLESYFSPTLLRVIRLARIGRILRLIR 1589
Query: 46 --TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSK 86
++ LL ++ ++ AL N+ +L +V++I+++ GM F+
Sbjct: 1590 AAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMASFAN 1632
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMT---EFVD-----GLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V SL L+ E+ D L LR LR + M+V++
Sbjct: 1214 YFTNAWCWLDFLIVNISLTSLIAKILEYSDVASIKALRTLRALRPLRALSRFEGMRVVVD 1273
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYT 89
++ I ++ N+ V +I IF+++G+ LF+ ++
Sbjct: 1274 ALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFS 1309
>sp|P02719|SCNA_ELEEL Sodium channel protein OS=Electrophorus electricus PE=2 SV=1
Length = 1820
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ WNIFD I+V+ SL++L + G+SVLR LRL SW T+ +L+ II ++
Sbjct: 625 YFQQTWNIFDSIIVSLSLLELGLSNMQGMSVLRSLRLLRIFKLAKSWPTLNILIKIICNS 684
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+GALGNLT VL I+++IFA++G QLF K+Y
Sbjct: 685 VGALGNLTIVLAIIVFIFALVGFQLFGKNYKE 716
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 16/101 (15%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSWTT-------- 47
+AL +F GWN+FD VV S++ D++ ++ ++ R +RL+
Sbjct: 1374 LALRQYFFTVGWNVFDFAVVVISIIGLLLSDIIEKYFVSPTLFRVIRLARIARVLRLIRA 1433
Query: 48 ---MKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L ++++IF++ GM F+
Sbjct: 1434 AKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFA 1474
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V AS++ + + + L +R LR + MKV++
Sbjct: 1061 YFTDAWCWLDFVIVGASIMGITSSLLGYEELGAIKNLRTIRALRPLRALSRFEGMKVVVR 1120
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ I ++ N+ V ++ IF+++G+ LF+ +
Sbjct: 1121 ALLGAIPSIMNVLLVCLMFWLIFSIMGVNLFAGKF 1155
>sp|Q9Y5Y9|SCNAA_HUMAN Sodium channel protein type 10 subunit alpha OS=Homo sapiens
GN=SCN10A PE=1 SV=2
Length = 1956
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ WNIFD I+VT SL++L LSVLR RL SW T+ L+ II ++
Sbjct: 724 YFQKKWNIFDCIIVTVSLLELGVAKKGSLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNS 783
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEK 92
+GALGNLT +L I++++FA++G QL ++Y + +
Sbjct: 784 VGALGNLTIILAIIVFVFALVGKQLLGENYRNNR 817
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--VDGLSVLRGLRLSWTT-----MKVLLSIIISTI 59
Y + WN D V+T + V + + GL R LR T +KV++ +I ++
Sbjct: 184 YLRDPWNWLDFSVITLAYVGTAIDLRGISGLRTFRVLRALKTVSVIPGLKVIVGALIHSV 243
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSE 91
L ++T + + + +FA++G+QLF + ++
Sbjct: 244 KKLADVTILTIFCLSVFALVGLQLFKGNLKNK 275
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 20/102 (19%)
Query: 2 ALSNDYFQCGWNIFDLIVV---------TASLVDLMTEFVDGL----------SVLRGLR 42
AL YF GWN+FD IVV +A L L + F L +LR +R
Sbjct: 1529 ALRQYYFTNGWNVFDFIVVVLSIASLIFSAILKSLQSYFSPTLFRVIRLARIGRILRLIR 1588
Query: 43 LSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ ++ LL ++ ++ AL N+ +L +V++I+++ GM F
Sbjct: 1589 AA-KGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSSF 1629
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 5 NDYFQCGWNIFDLIVVTASLVDLMTEFVD--------GLSVLRGLRL-----SWTTMKVL 51
YF W D ++V SL+ L + ++ L LR LR + M+V+
Sbjct: 1211 KKYFTNAWCWLDFLIVNISLISLTAKILEYSEVAPIKALRTLRALRPLRALSRFEGMRVV 1270
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ ++ I ++ N+ V +I IF+++G+ LF+ +
Sbjct: 1271 VDALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF 1307
>sp|O46669|SCNAA_CANFA Sodium channel protein type 10 subunit alpha OS=Canis familiaris
GN=SCN10A PE=2 SV=1
Length = 1962
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 8/94 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ WNIFD I+VT SL++L LSVLR RL SW T+ L+ II ++
Sbjct: 733 YFQKRWNIFDCIIVTVSLIELGAARKGSLSVLRTFRLLRVFKLAKSWPTLNTLIKIIGNS 792
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEK 92
+GALGNLT +L I++++FA++G QL ++Y +
Sbjct: 793 VGALGNLTIILAIIVFVFALVGKQLLGENYRDNR 826
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 2 ALSNDYFQCGWNIFDLIVVTAS---------LVDLMTEFVDGL----------SVLRGLR 42
AL + YF GWN+FD IVV S L L F L +LR +R
Sbjct: 1536 ALRHYYFTNGWNVFDFIVVVLSIGSLVFSVILTSLENYFSPTLFRVIRLARIGRILRLIR 1595
Query: 43 LSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ ++ LL ++ ++ AL N+ +L +V++I+++ GM F
Sbjct: 1596 AA-KGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMASF 1636
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--VDGLSVLRGLRLSWTT-----MKVLLSIIISTI 59
Y + W+ D V+T + + T + GL R LR T +KV++ +I ++
Sbjct: 184 YLRDPWDWLDFSVITLAYIGEATALRGISGLRTFRVLRALKTVSVIPGLKVIVGALIHSV 243
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSE 91
L ++T + V + +FA++G+QLF + ++
Sbjct: 244 RKLADVTILTVFCLSVFALVGLQLFKGNLKNK 275
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 5 NDYFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVL 51
YF W D ++V SL+ L+ + + L LR LR + M+V+
Sbjct: 1218 KKYFTNAWCWLDFLIVNISLISLIAKILQYSDVASIKALRTLRALRPLRALSRFEGMRVV 1277
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ ++ I ++ N+ V +I IF+ +G+ F+ +
Sbjct: 1278 VDALVGAIPSIMNVLLVCLIFWLIFSTMGVNFFAGKF 1314
>sp|Q9UI33|SCNBA_HUMAN Sodium channel protein type 11 subunit alpha OS=Homo sapiens
GN=SCN11A PE=1 SV=2
Length = 1791
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 10/97 (10%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMT--------EFVDGLSVLRGLRL--SWTTMKVLLSII 55
YF+ GWNIFD IV S D+M F+ VLR +L SW T+ L+ II
Sbjct: 635 HYFRRGWNIFDSIVALLSFADVMNCVLQKRSWPFLRSFRVLRVFKLAKSWPTLNTLIKII 694
Query: 56 ISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEK 92
+++GALG+LT VLVIVI+IF+V+GMQLF + + S+K
Sbjct: 695 GNSVGALGSLTVVLVIVIFIFSVVGMQLFGRSFNSQK 731
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 18/103 (17%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVL----------------RGLRL-- 43
AL YF GWN+FD +VV S+V M ++ + R LRL
Sbjct: 1419 ALRQYYFTNGWNLFDCVVVLLSIVSTMISTLENQEHIPFPPTLFRIVRLARIGRILRLVR 1478
Query: 44 SWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSK 86
+ ++ LL ++ ++ +L N+ +L ++++I+A++GM FSK
Sbjct: 1479 AARGIRTLLFALMMSLPSLFNIGLLLFLIMFIYAILGMNWFSK 1521
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 7 YFQCGWNIFDLIVVTAS---LVDLMT-EFVDGLSVLRGLRL--SWTTMKVLLSIIISTIG 60
YF W D I+V S L++LM + L LR LR + MKV+++ +I I
Sbjct: 1117 YFTSAWCCLDFIIVIVSVTTLINLMELKSFRTLRALRPLRALSQFEGMKVVVNALIGAIP 1176
Query: 61 ALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
A+ N+ V +I +F ++G+ FS +
Sbjct: 1177 AILNVLLVCLIFWLVFCILGVYFFSGKF 1204
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 12 WNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSW--------TTMKVLLSIIISTIGALG 63
WN D IV+ ++V + L LR R+ + +KV++ ++ ++ L
Sbjct: 195 WNWLDSIVIGIAIVSYIPGITIKLLPLRTFRVFRALKAISVVSRLKVIVGALLRSVKKLV 254
Query: 64 NLTFVLVIVIYIFAVIGMQLF 84
N+ + + IFA++G QLF
Sbjct: 255 NVIILTFFCLSIFALVGQQLF 275
>sp|O88457|SCNBA_RAT Sodium channel protein type 11 subunit alpha OS=Rattus norvegicus
GN=Scn11a PE=1 SV=1
Length = 1765
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 7 YFQCGWNIFDLIVVTASLVDLM--------TEFVDGLSVLRGLRL--SWTTMKVLLSIII 56
YF+ GWN+FD IV SL D++ F+ L VLR +L SW T+ L+ II
Sbjct: 631 YFRHGWNVFDSIVALLSLADVLYNTLSDNNRSFLASLRVLRVFKLAKSWPTLNTLIKIIG 690
Query: 57 STIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
++GALGNLT VL IV++IF+V+GM+LF + +A P
Sbjct: 691 HSVGALGNLTVVLTIVVFIFSVVGMRLFGTKFNKTAYATQERP 733
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 17/102 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLVD-LMTEFVDG-----LSVLRGLRLSW---------- 45
AL YF GWN+FD +VV S++ L++ D ++ R +RL+
Sbjct: 1399 ALRQHYFTNGWNLFDCVVVVLSIISTLVSRLEDSDISFPPTLFRVVRLARIGRILRLVRA 1458
Query: 46 -TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSK 86
++ LL ++ ++ +L N+ +L +V++I+A+ GM FSK
Sbjct: 1459 ARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMSWFSK 1500
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMT----EFVDGLSVLRGLRL--SWTTMKVLLSIIISTIG 60
YF W D ++V S++ LM + L LR LR + MKV++ +IS I
Sbjct: 1095 YFTSAWCWLDFLIVVVSVLSLMNLPSLKSFRTLRALRPLRALSQFEGMKVVVYALISAIP 1154
Query: 61 ALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
A+ N+ V +I +F ++G+ LFS +
Sbjct: 1155 AILNVLLVCLIFWLVFCILGVNLFSGKF 1182
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 12 WNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSW--------TTMKVLLSIIISTIGALG 63
WN D IV+ ++ LS LR R+ + +KV++ ++ ++ L
Sbjct: 192 WNWLDFIVIGTAIATCFPGSQVNLSALRTFRVFRALKAISVISGLKVIVGALLRSVKKLV 251
Query: 64 NLTFVLVIVIYIFAVIGMQLF----SKDYTSEKFAPDPV 98
++ + + + IFA++G QLF ++ P+P
Sbjct: 252 DVMVLTLFCLSIFALVGQQLFMGILNQKCIKHNCGPNPA 290
>sp|Q9R053|SCNBA_MOUSE Sodium channel protein type 11 subunit alpha OS=Mus musculus
GN=Scn11a PE=1 SV=2
Length = 1765
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 9/93 (9%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTE-------FVDGLSVLRGLRL--SWTTMKVLLSIIIS 57
YF+ GWNIFD IV SL D++ F+ L VLR +L SW T+ L+ II
Sbjct: 634 YFRHGWNIFDSIVALVSLADVLFHKLSKNLSFLASLRVLRVFKLAKSWPTLNTLIKIIGH 693
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
++GALGNLT VL IV++IF+V+GM+LF +
Sbjct: 694 SVGALGNLTVVLTIVVFIFSVVGMRLFGAKFNK 726
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 16/101 (15%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVL--------------RGLRL--SW 45
AL YF GWN+FD +VV S++ + ++ +V R LRL +
Sbjct: 1400 ALRQHYFTNGWNLFDCVVVVLSIISTLVSGLENSNVFPPTLFRIVRLARIGRILRLVRAA 1459
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSK 86
++ LL ++ ++ +L N+ +L +V++I+A+ GM FSK
Sbjct: 1460 RGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMNWFSK 1500
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMT----EFVDGLSVLRGLRL--SWTTMKVLLSIIISTIG 60
YF W D ++V S + L + L LR LR + MKV+++ ++S I
Sbjct: 1096 YFTSAWCWLDFLIVVVSGLSLTNLPNLKSFRNLRALRPLRALSQFEGMKVVVNALMSAIP 1155
Query: 61 ALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
A+ N+ V +I IF ++G+ FS +
Sbjct: 1156 AILNVLLVCLIFWLIFCILGVNFFSGKF 1183
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEFVDGLSVLRGLRLSW--------TTMKVLLSIIIS 57
Y + WN D IV+ TA + V+ LS LR R+ + +KV++ ++
Sbjct: 189 YLRDPWNWLDFIVIGTAIAPCFLGNKVNNLSTLRTFRVLRALKAISVISGLKVIVGALLR 248
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLF 84
++ L ++ + + + IFA++G QLF
Sbjct: 249 SVKKLVDVMVLTLFCLSIFALVGQQLF 275
>sp|Q28371|SCN4A_HORSE Sodium channel protein type 4 subunit alpha OS=Equus caballus
GN=SCN4A PE=1 SV=1
Length = 1834
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 60/93 (64%), Gaps = 8/93 (8%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
+YFQ GWN+FD I+VT S V+L V GLSVLR RL SW T+ + + II +
Sbjct: 630 EYFQQGWNVFDSIIVTLSWVELGLVNVKGLSVLRSFRLVRSLKLAKSWPTLNMFIRIIGN 689
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
+ G LGNLT VL I++ F+V+GMQLF K+Y
Sbjct: 690 SGGGLGNLTLVLAIIVVNFSVVGMQLFGKNYKE 722
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 16/100 (16%)
Query: 2 ALSNDYFQCGWNIFDLIVVTASLV-----DLMTEFVDGLSVLRGLRLSW----------- 45
AL +YF GWNIFD +VV S+V DL+ ++ ++ R +RL+
Sbjct: 1403 ALRQNYFTVGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRVIRLARIGRVLRLIRGA 1462
Query: 46 TTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFS 85
++ LL ++ ++ AL N+ +L++V++I+++ GM F+
Sbjct: 1463 KGIRTLLFALMMSLPALFNIGLLLILVMFIYSIFGMSNFA 1502
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 20/107 (18%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF--------VDGLSVLRGLRL-----SWTTMKVLLS 53
YF W D ++V S++ L+ + + L LR LR + M+V+++
Sbjct: 1089 YFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVN 1148
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF-SKDY------TSEKF 93
++ I ++ N+ V +I IF+++G+ LF +K Y TSE+F
Sbjct: 1149 ALLGAIPSIMNVLLVCLIFWVIFSIMGVNLFAAKIYYFINTTTSERF 1195
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 WNIFDLIVVTASLVDLMTEFVD--GLSVLRGLRLSWT--------TMKVLLSIIISTIGA 61
WN D V+ ++ +TEFVD +S LR R+ +K ++ +I ++
Sbjct: 193 WNWLDFSVI---MMAYLTEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKK 249
Query: 62 LGNLTFVLVIVIYIFAVIGMQLF 84
L ++ + V + +FA++G+QLF
Sbjct: 250 LSDVMILTVFCLSVFALVGLQLF 272
>sp|Q01118|SCN7A_HUMAN Sodium channel protein type 7 subunit alpha OS=Homo sapiens
GN=SCN7A PE=2 SV=2
Length = 1682
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
YFQ GWNIFD ++V L++L V G+++LR R+ W T ++L+ + ++
Sbjct: 564 YFQVGWNIFDSMIVFHGLIELCLANVAGMALLRLFRMLRIFKLGKYWPTFQILMWSLSNS 623
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
AL +L +L I+ A GM+LF K+Y
Sbjct: 624 WVALKDLVLLLFTFIFFSAAFGMKLFGKNYEE 655
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLS------VLRGLRL--SWTTMKVLLSIIIST 58
YF GW D +VV + L+ + + L LR LR+ + MKV++ +I T
Sbjct: 995 YFSNGWYRLDFVVVIVFCLSLIGKTREELKPLISMKFLRPLRVLSQFERMKVVVRALIKT 1054
Query: 59 IGALGNLTFVLVIVIYIFAVIGMQLFS 85
N+ V +++ IF+++G+ LF+
Sbjct: 1055 TLPTLNVFLVCLMIWLIFSIMGVDLFA 1081
>sp|P56698|CAC1B_DIPOM Probable voltage-dependent N-type calcium channel subunit alpha-1B
OS=Diplobatis ommata PE=2 SV=1
Length = 2326
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 6 DYFQCGWNIFDLIVVTASLVD-LMTEFVDG---LSVLRGLRLSWT--------TMKVLLS 53
+YF+ WN+FD + V S+ D L+TE D LS LR R + T+++LL
Sbjct: 1526 NYFRDAWNVFDFVTVLGSITDILVTELADSFINLSFLRLFRAARLIKLLRQGYTIRILLW 1585
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ + AL + ++ ++ +I+A+IGMQ+F
Sbjct: 1586 TFVQSFKALPYVCLLIAMLFFIYAIIGMQVF 1616
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 7 YFQCGWNIFDLIVVTASLV----------DLMTEFVDGLSVLRGLRLSWT-----TMKVL 51
YF+ WNI D IVV+ +LV DL T + L VLR LR T +K +
Sbjct: 1211 YFRDLWNILDFIVVSGALVAFAFTGSRGKDLNT--IKSLRVLRVLRPLKTIKRLPKLKAV 1268
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+++++ + N+ V ++ ++IFAVI +QLF +
Sbjct: 1269 FDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKF 1305
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEF----VDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
Y + GWN+ D +VV T L + T+F + + VLR L+L +++V+L I+ +
Sbjct: 154 YLRNGWNVMDFVVVLTGILTTIGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAM 213
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPD 96
L + +L I +FA+IG++ + + F+ +
Sbjct: 214 VPLLQIGLLLFFAILMFAIIGLEFYMGKFHKTCFSEE 250
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVD-----GLSVLRGLRL--------SWTTMKVLL 52
+YF +N FD V+ S+ +++ V G+SVLR LRL W +++ L+
Sbjct: 530 NYFHSSFNCFDFGVIVGSIFEVVWTAVKPDTSFGISVLRALRLLRIFKVTKYWNSLRNLV 589
Query: 53 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP 95
+++++ ++ +L F+L + I +FA++GMQLF + E P
Sbjct: 590 VSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDGTP 632
>sp|P54282|CAC1A_RAT Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Rattus
norvegicus GN=Cacna1a PE=1 SV=1
Length = 2212
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 12/91 (13%)
Query: 6 DYFQCGWNIFDLIVVTASLVD-LMTEFVDG---LSVLRGLRLSWT--------TMKVLLS 53
+YF+ WNIFD + V S+ D L+TEF + LS LR R + T+++LL
Sbjct: 1575 NYFRDAWNIFDFVTVLGSITDILVTEFGNNFINLSFLRLFRAARLIKLLRQGYTIRILLW 1634
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ + AL + ++ ++ +I+A+IGMQ+F
Sbjct: 1635 TFVQSFKALPYVCLLIAMLFFIYAIIGMQVF 1665
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 7 YFQCGWNIFDLIVVTASLV-----------DLMTEFVDGLSVLRGLRLSWT-----TMKV 50
YF+ WNI D IVV+ +LV D+ T + L VLR LR T +K
Sbjct: 1259 YFRDLWNILDFIVVSGALVAFAFTGNSKGKDINT--IKSLRVLRVLRPLKTIKRLPKLKA 1316
Query: 51 LLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ +++++ + N+ V ++ ++IFAV+ +QLF +
Sbjct: 1317 VFDCVVNSLKNVFNILIVYMLFMFIFAVVAVQLFKGKF 1354
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEF----VDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
Y + GWN+ D +VV T L + TEF + + VLR L+L +++V+L I+ +
Sbjct: 166 YLRNGWNVMDFVVVLTGILATVGTEFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAM 225
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKF 93
L + +L I IFA+IG++ + + + F
Sbjct: 226 IPLLQIGLLLFFAILIFAIIGLEFYMGKFHTTCF 259
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 13/102 (12%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVD-----GLSVLRGLRL--------SWTTMKVLLS 53
YF +N FD V+ S+ +++ + G+SVLR LRL W +++ L+
Sbjct: 548 YFHSSFNCFDCGVIIGSIFEVIWAVIKPGTSFGISVLRALRLLRIFKVTKYWASLRNLVV 607
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP 95
+++++ ++ +L F+L + I +FA++GMQLF + ++ P
Sbjct: 608 SLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFDEGTP 649
>sp|P27884|CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A
OS=Oryctolagus cuniculus GN=CACNA1A PE=1 SV=1
Length = 2424
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 12/91 (13%)
Query: 6 DYFQCGWNIFDLIVVTASLVD-LMTEFVDG---LSVLRGLRLSWT--------TMKVLLS 53
+YF+ WNIFD + V S+ D L+TEF + LS LR R + T+++LL
Sbjct: 1633 NYFRDAWNIFDFVTVLGSITDILVTEFGNNFINLSFLRLFRAARLIKLLRQGYTIRILLW 1692
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ + AL + ++ ++ +I+A+IGMQ+F
Sbjct: 1693 TFVQSFKALPYVCLLIAMLFFIYAIIGMQVF 1723
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 7 YFQCGWNIFDLIVVTASLV-----------DLMTEFVDGLSVLRGLRLSWT-----TMKV 50
YF+ WNI D IVV+ +LV D+ T + L VLR LR T +K
Sbjct: 1317 YFRDLWNILDFIVVSGALVAFAFTGNSKGKDINT--IKSLRVLRVLRPLKTIKRLPKLKA 1374
Query: 51 LLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ +++++ + N+ V ++ ++IFAV+ +QLF +
Sbjct: 1375 VFDCVVNSLKNVFNILIVYMLFMFIFAVVAVQLFKGKF 1412
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEF----VDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
Y + GWN+ D +VV T L + TEF + + VLR L+L +++V+L I+ +
Sbjct: 164 YLRNGWNVMDFVVVLTGILATVGTEFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAM 223
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKF 93
L + +L I IFA+IG++ + + + F
Sbjct: 224 IPLLQIGLLLFFAILIFAIIGLEFYMGKFHTTCF 257
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 13/102 (12%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVD-----GLSVLRGLRL--------SWTTMKVLLS 53
YF +N FD V+ S+ +++ + G+SVLR LRL W +++ L+
Sbjct: 546 YFHSSFNCFDCGVIIGSIFEVIWAVIKPGTSFGISVLRALRLLRIFKVTKYWASLRNLVV 605
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP 95
+++++ ++ +L F+L + I +FA++GMQLF + ++ P
Sbjct: 606 SLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFDEGTP 647
>sp|P97445|CAC1A_MOUSE Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Mus
musculus GN=Cacna1a PE=1 SV=2
Length = 2368
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 12/91 (13%)
Query: 6 DYFQCGWNIFDLIVVTASLVD-LMTEFVDG---LSVLRGLRLSWT--------TMKVLLS 53
+YF+ WNIFD + V S+ D L+TEF + LS LR R + T+++LL
Sbjct: 1575 NYFRDAWNIFDFVTVLGSITDILVTEFGNNFINLSFLRLFRAARLIKLLRQGYTIRILLW 1634
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ + AL + ++ ++ +I+A+IGMQ+F
Sbjct: 1635 TFVQSFKALPYVCLLIAMLFFIYAIIGMQVF 1665
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 7 YFQCGWNIFDLIVVTASLV-----------DLMTEFVDGLSVLRGLRLSWT-----TMKV 50
YF+ WNI D IVV+ +LV D+ T + L VLR LR T +K
Sbjct: 1259 YFRDLWNILDFIVVSGALVAFAFTGNSKGKDINT--IKSLRVLRVLRPLKTIKRLPKLKA 1316
Query: 51 LLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ +++++ + N+ V ++ ++IFAV+ +QLF +
Sbjct: 1317 VFDCVVNSLKNVFNILIVYMLFMFIFAVVAVQLFKGKF 1354
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEF----VDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
Y + GWN+ D +VV T L + TEF + + VLR L+L +++V+L I+ +
Sbjct: 166 YLRNGWNVMDFVVVLTGILATVGTEFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAM 225
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKF 93
L + +L I IFA+IG++ + + + F
Sbjct: 226 IPLLQIGLLLFFAILIFAIIGLEFYMGKFHTTCF 259
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 13/102 (12%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVD-----GLSVLRGLRL--------SWTTMKVLLS 53
YF +N FD V+ S+ +++ + G+SVLR LRL W +++ L+
Sbjct: 548 YFHSSFNCFDCGVIIGSIFEVIWAVIKPGTSFGISVLRALRLLRIFKVTKYWASLRNLVV 607
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP 95
+++++ ++ +L F+L + I +FA++GMQLF + ++ P
Sbjct: 608 SLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFDEGTP 649
>sp|O00555|CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Homo
sapiens GN=CACNA1A PE=1 SV=2
Length = 2505
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 12/91 (13%)
Query: 6 DYFQCGWNIFDLIVVTASLVD-LMTEFVDG---LSVLRGLRLSWT--------TMKVLLS 53
+YF+ WNIFD + V S+ D L+TEF + LS LR R + T+++LL
Sbjct: 1624 NYFRDAWNIFDFVTVLGSITDILVTEFGNNFINLSFLRLFRAARLIKLLRQGYTIRILLW 1683
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ + AL + ++ ++ +I+A+IGMQ+F
Sbjct: 1684 TFVQSFKALPYVCLLIAMLFFIYAIIGMQVF 1714
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 7 YFQCGWNIFDLIVVTASLV-----------DLMTEFVDGLSVLRGLRLSWT-----TMKV 50
YF+ WNI D IVV+ +LV D+ T + L VLR LR T +K
Sbjct: 1308 YFRDLWNILDFIVVSGALVAFAFTGNSKGKDINT--IKSLRVLRVLRPLKTIKRLPKLKA 1365
Query: 51 LLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ +++++ + N+ V ++ ++IFAV+ +QLF +
Sbjct: 1366 VFDCVVNSLKNVFNILIVYMLFMFIFAVVAVQLFKGKF 1403
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEF----VDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
Y + GWN+ D +VV T L + TEF + + VLR L+L +++V+L I+ +
Sbjct: 164 YLRNGWNVMDFVVVLTGILATVGTEFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAM 223
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKF 93
L + +L I IFA+IG++ + + + F
Sbjct: 224 IPLLQIGLLLFFAILIFAIIGLEFYMGKFHTTCF 257
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 13/102 (12%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVD-----GLSVLRGLRL--------SWTTMKVLLS 53
YF +N FD V+ S+ +++ + G+SVLR LRL W +++ L+
Sbjct: 546 YFHSSFNCFDCGVIIGSIFEVIWAVIKPGTSFGISVLRALRLLRIFKVTKYWASLRNLVV 605
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP 95
+++++ ++ +L F+L + I +FA++GMQLF + ++ P
Sbjct: 606 SLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFDEGTP 647
>sp|Q02294|CAC1B_RAT Voltage-dependent N-type calcium channel subunit alpha-1B OS=Rattus
norvegicus GN=Cacna1b PE=1 SV=1
Length = 2336
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 6 DYFQCGWNIFDLIVVTASLVD-LMTEFVDG---LSVLRGLRLSWT--------TMKVLLS 53
+YF+ WN+FD + V S+ D L+TE + LS LR R + T+++LL
Sbjct: 1531 NYFRDAWNVFDFVTVLGSITDILVTEIANNFINLSFLRLFRAARLIKLCRQGYTIRILLW 1590
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ + AL + ++ ++ +I+A+IGMQ+F
Sbjct: 1591 TFVQSFKALPYVCLLIAMLFFIYAIIGMQVF 1621
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 17/99 (17%)
Query: 7 YFQCGWNIFDLIVVTASLVDL-MTEFVDG-----------LSVLRGLRLSWT-----TMK 49
YF+ WNI D IVV+ +LV + F+ G L VLR LR T +K
Sbjct: 1212 YFRDLWNILDFIVVSGALVAFAFSSFMGGSKGKDINTIKSLRVLRVLRPLKTIKRLPKLK 1271
Query: 50 VLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ +++++ + N+ V ++ ++IFAVI +QLF +
Sbjct: 1272 AVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKF 1310
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEF----VDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
Y + GWN+ D +VV T L T+F + + VLR L+L +++V+L I+ +
Sbjct: 161 YLRNGWNVMDFVVVLTEILATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAM 220
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLF 84
L + +L I +FA+IG++ +
Sbjct: 221 VPLLQIGLLLFFAILMFAIIGLEFY 245
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 17/104 (16%)
Query: 7 YFQCGWNIFDLIVVTASLVDLM-------TEFVDGLSVLRGLRL--------SWTTMKVL 51
YF+ +N FD V+ S+ +++ T F G+SVLR LRL W +++ L
Sbjct: 542 YFRSSFNCFDFGVIVGSIFEVVWAAIKPGTSF--GISVLRALRLLRIFKVTKYWNSLRNL 599
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP 95
+ +++++ ++ +L F+L + I +FA++GMQLF + + P
Sbjct: 600 VVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFQDETP 643
>sp|Q05152|CAC1B_RABIT Voltage-dependent N-type calcium channel subunit alpha-1B
OS=Oryctolagus cuniculus GN=CACNA1B PE=1 SV=1
Length = 2339
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 6 DYFQCGWNIFDLIVVTASLVD-LMTEFVDG---LSVLRGLRLSWT--------TMKVLLS 53
+YF+ WN+FD + V S+ D L+TE + LS LR R + T+++LL
Sbjct: 1534 NYFRDAWNVFDFVTVLGSITDILVTEIANNFINLSFLRLFRAARLIKLLRQGYTIRILLW 1593
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ + AL + ++ ++ +I+A+IGMQ+F
Sbjct: 1594 TFVQSFKALPYVCLLIAMLFFIYAIIGMQVF 1624
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 7 YFQCGWNIFDLIVVTASLV----------DLMTEFVDGLSVLRGLRLSWT-----TMKVL 51
YF+ WNI D IVV+ +LV D+ T + L VLR LR T +K +
Sbjct: 1219 YFRDLWNILDFIVVSGALVAFAFSGSKGKDIST--IKSLRVLRVLRPLKTIKRLPKLKAV 1276
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+++++ + N+ V ++ ++IFAVI +QLF +
Sbjct: 1277 FDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKF 1313
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEF----VDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
Y + GWN+ D +VV T L T+F + + VLR L+L +++V+L I+ +
Sbjct: 161 YLRNGWNVMDFVVVLTGILATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAM 220
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFA----PDPV 98
L + +L I +FA+IG++ + + F PDPV
Sbjct: 221 VPLLQIGLLLFFAILMFAIIGLEFYMGKFHKACFPNSTDPDPV 263
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 13/102 (12%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVD-----GLSVLRGLRL--------SWTTMKVLLS 53
YF+ +N FD V+ S+ +++ V G+SVLR LRL W +++ L+
Sbjct: 542 YFRSSFNCFDFGVIVGSIFEVVWAAVKPGTSFGISVLRALRLLRIFKVTKYWNSLRNLVV 601
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP 95
+++++ ++ +L F+L + I +FA++GMQLF + + P
Sbjct: 602 SLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFKDETP 643
>sp|O55017|CAC1B_MOUSE Voltage-dependent N-type calcium channel subunit alpha-1B OS=Mus
musculus GN=Cacna1b PE=1 SV=1
Length = 2327
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 6 DYFQCGWNIFDLIVVTASLVD-LMTEFVDG---LSVLRGLRLSWT--------TMKVLLS 53
+YF+ WN+FD + V S+ D L+TE + LS LR R + T+++LL
Sbjct: 1522 NYFRDAWNVFDFVTVLGSITDILVTEIANNFINLSFLRLFRAARLIKLLRQGYTIRILLW 1581
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ + AL + ++ ++ +I+A+IGMQ+F
Sbjct: 1582 TFVQSFKALPYVCLLIAMLFFIYAIIGMQVF 1612
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 17/99 (17%)
Query: 7 YFQCGWNIFDLIVVTASLVDL-MTEFVDG-----------LSVLRGLRLSWT-----TMK 49
YF+ WNI D IVV+ +LV + F+ G L VLR LR T +K
Sbjct: 1203 YFRDLWNILDFIVVSGALVAFAFSSFMGGSKGKDINTIKSLRVLRVLRPLKTIKRLPKLK 1262
Query: 50 VLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+ +++++ + N+ V ++ ++IFAVI +QLF +
Sbjct: 1263 AVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKF 1301
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEF----VDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
Y + GWN+ D +VV T L T+F + + VLR L+L +++V+L I+ +
Sbjct: 161 YLRNGWNVMDFVVVLTGILATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAM 220
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLF 84
L + +L I +FA+IG++ +
Sbjct: 221 VPLLQIGLLLFFAILMFAIIGLEFY 245
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 17/104 (16%)
Query: 7 YFQCGWNIFDLIVVTASLVDLM-------TEFVDGLSVLRGLRL--------SWTTMKVL 51
YF+ +N FD V+ S+ +++ T F G+SVLR LRL W +++ L
Sbjct: 541 YFRSSFNCFDFGVIVGSIFEVVWAAIKPGTSF--GISVLRALRLLRIFKVTKYWNSLRNL 598
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP 95
+ +++++ ++ +L F+L + I +FA++GMQLF + + P
Sbjct: 599 VVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFQDETP 642
>sp|O54898|CAC1G_RAT Voltage-dependent T-type calcium channel subunit alpha-1G OS=Rattus
norvegicus GN=Cacna1g PE=2 SV=2
Length = 2254
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 16/98 (16%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVL------------LSI 54
Y + +NIFD ++V S+ +++ + GLSVLR RL M+VL L +
Sbjct: 803 YIKNPYNIFDGVIVVISVWEIVGQQGGGLSVLRTFRL----MRVLKLVRFLPALQRQLVV 858
Query: 55 IISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEK 92
++ T+ + +L++ I+IF+++GM LF + SE+
Sbjct: 859 LMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFASER 896
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 30/105 (28%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDG-----------------------LSVLRGLRL 43
Y + WN+ D ++V S++D++ V +S +GL+L
Sbjct: 1320 YLRSSWNVLDGLLVLISVIDILVSMVSDSGTKILGMLRVLRLLRTLRPLRVISRAQGLKL 1379
Query: 44 SWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ ++S++ +GN+ + IF ++G+QLF +
Sbjct: 1380 -------VVETLMSSLKPIGNIVVICCAFFIIFGILGVQLFKGKF 1417
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF-------VDGLSVLRGLRL--SWTTMKVLLSIIIS 57
Y WN D +V A +++ + V + VLR LR +M++L+++++
Sbjct: 147 YLGDTWNRLDFFIVIAGMLEYSLDLQNVSFSAVRTVRVLRPLRAINRVPSMRILVTLLLD 206
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPD 96
T+ LGN+ + V +IF ++G+QL++ + F P+
Sbjct: 207 TLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLPE 245
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 18/96 (18%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDG----------LSVLRGLRLSWTT--------M 48
+FQ WN DL +V S++ + E ++ + ++R LR++ M
Sbjct: 1638 FFQDRWNQLDLAIVLLSIMGITLEEIEVNLSLPINPTIIRIMRVLRIARVLKLLKMAVGM 1697
Query: 49 KVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ LL ++ + +GNL + +++ +IFA +G++LF
Sbjct: 1698 RALLHTVMQALPQVGNLGLLFMLLFFIFAALGVELF 1733
>sp|O43497|CAC1G_HUMAN Voltage-dependent T-type calcium channel subunit alpha-1G OS=Homo
sapiens GN=CACNA1G PE=2 SV=3
Length = 2377
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 16/98 (16%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVL------------LSI 54
Y + +NIFD ++V S+ +++ + GLSVLR RL M+VL L +
Sbjct: 802 YIKNPYNIFDGVIVVISVWEIVGQQGGGLSVLRTFRL----MRVLKLVRFLPALQRQLVV 857
Query: 55 IISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEK 92
++ T+ + +L++ I+IF+++GM LF + SE+
Sbjct: 858 LMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFASER 895
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 30/105 (28%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDG-----------------------LSVLRGLRL 43
Y + WN+ D ++V S++D++ V +S +GL+L
Sbjct: 1341 YLRSSWNVLDGLLVLISVIDILVSMVSDSGTKILGMLRVLRLLRTLRPLRVISRAQGLKL 1400
Query: 44 SWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ ++S++ +GN+ + IF ++G+QLF +
Sbjct: 1401 -------VVETLMSSLKPIGNIVVICCAFFIIFGILGVQLFKGKF 1438
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEF-------VDGLSVLRGLRL--SWTTMKVLLSIIIS 57
Y WN D +V A +++ + V + VLR LR +M++L+++++
Sbjct: 147 YLGDTWNRLDFFIVIAGMLEYSLDLQNVSFSAVRTVRVLRPLRAINRVPSMRILVTLLLD 206
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPD 96
T+ LGN+ + V +IF ++G+QL++ + F P+
Sbjct: 207 TLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLPE 245
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 18/96 (18%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDG----------LSVLRGLRLSWTT--------M 48
+FQ WN DL +V S++ + E ++ + ++R LR++ M
Sbjct: 1670 FFQDRWNQLDLAIVLLSIMGITLEEIEVNASLPINPTIIRIMRVLRIARVLKLLKMAVGM 1729
Query: 49 KVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
+ LL ++ + +GNL + +++ +IFA +G++LF
Sbjct: 1730 RALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELF 1765
>sp|Q00975|CAC1B_HUMAN Voltage-dependent N-type calcium channel subunit alpha-1B OS=Homo
sapiens GN=CACNA1B PE=1 SV=1
Length = 2339
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 14/93 (15%)
Query: 6 DYFQCGWNIFDLIVVTASLVD-LMTEFVD-----GLSVLRGLRLSWT--------TMKVL 51
+YF+ WN+FD + V S+ D L+TE + LS LR R + T+++L
Sbjct: 1529 NYFRDAWNVFDFVTVLGSITDILVTEIAETNNFINLSFLRLFRAARLIKLLRQGYTIRIL 1588
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLF 84
L + + AL + ++ ++ +I+A+IGMQ+F
Sbjct: 1589 LWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVF 1621
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 7 YFQCGWNIFDLIVVTASLV----------DLMTEFVDGLSVLRGLRLSWT-----TMKVL 51
YF+ WNI D IVV+ +LV D+ T + L VLR LR T +K +
Sbjct: 1214 YFRDLWNILDFIVVSGALVAFAFSGSKGKDINT--IKSLRVLRVLRPLKTIKRLPKLKAV 1271
Query: 52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+++++ + N+ V ++ ++IFAVI +QLF +
Sbjct: 1272 FDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKF 1308
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 7 YFQCGWNIFDLIVV-TASLVDLMTEF----VDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
Y + GWN+ D +VV T L T+F + + VLR L+L +++V+L I+ +
Sbjct: 161 YLRNGWNVMDFVVVLTGILATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAM 220
Query: 60 GALGNLTFVLVIVIYIFAVIGMQLF 84
L + +L I +FA+IG++ +
Sbjct: 221 VPLLQIGLLLFFAILMFAIIGLEFY 245
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 13/102 (12%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVD-----GLSVLRGLRL--------SWTTMKVLLS 53
YF+ +N FD V+ S+ +++ + G+SVLR LRL W++++ L+
Sbjct: 541 YFRSSFNCFDFGVIVGSVFEVVWAAIKPGSSFGISVLRALRLLRIFKVTKYWSSLRNLVV 600
Query: 54 IIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP 95
+++++ ++ +L F+L + I +FA++GMQLF + + P
Sbjct: 601 SLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFQDETP 642
>sp|Q9EQ60|CAC1H_RAT Voltage-dependent T-type calcium channel subunit alpha-1H OS=Rattus
norvegicus GN=Cacna1h PE=2 SV=2
Length = 2359
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 16/105 (15%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVL------------LSI 54
Y + +NIFD IVV S+ +++ + GLSVLR RL ++VL L +
Sbjct: 849 YIRNPYNIFDGIVVVISVWEIVGQANGGLSVLRTFRL----LRVLKLVRFLPALRRQLVV 904
Query: 55 IISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
++ T+ + +L++ I+IF+++GM LF ++ + + D VP
Sbjct: 905 LMRTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKTDSGDTVP 949
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 24/102 (23%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTT------------------- 47
Y Q WN+ D ++V SLVD++ ++ G ++
Sbjct: 1370 YLQSSWNVLDGLLVLVSLVDIIV----AMASAGGAKILGVLRVLRLLRTLRPLRVISRAP 1425
Query: 48 -MKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
+K+++ +IS++ +GN+ + IF ++G+QLF +
Sbjct: 1426 GLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKF 1467
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 18/103 (17%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDG----------LSVLRGLRLS--------WTTM 48
+F+ WN DL +V S++ + E ++ + ++R LR++ T M
Sbjct: 1681 FFKDRWNQLDLAIVLLSIMGIALEEIEMNAALPINPTIIRIMRVLRIARVLKLLKMATGM 1740
Query: 49 KVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSE 91
+ LL ++ + +GNL + +++ +I+A +G++LF + SE
Sbjct: 1741 RALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSE 1783
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.143 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,706,286
Number of Sequences: 539616
Number of extensions: 867793
Number of successful extensions: 4063
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3498
Number of HSP's gapped (non-prelim): 370
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)