RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13561
(99 letters)
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 72.1 bits (177), Expect = 6e-17
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
+F+ W++FD VV SLV + G +LR LR+ + M+ ++
Sbjct: 83 YVHRISFFKDPWSLFDFFVVAISLVPTSS----GFEILRVLRVLRLFRLVTAVPQMRKIV 138
Query: 53 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
S +IS I + ++ ++ + YIFA++ QLF + +
Sbjct: 139 SALISVIPGMLSVIALMTLFFYIFAIMATQLFGERF 174
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 70.8 bits (174), Expect = 9e-17
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
D+F+ GWNIFD ++V SL+ + VLR LR+ +K ++ I+
Sbjct: 71 DFFKSGWNIFDTVIVAISLIPIPNN--SSFLVLRLLRIFRVLRLISVIPELKQIIEAILE 128
Query: 58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
++ + ++ +L I++YI+A +G LF D
Sbjct: 129 SVRRVFFVSLLLFIILYIYATMGAILFGNDD 159
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 35.6 bits (82), Expect = 0.001
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL-----SWTTMKVLLSIIISTIGA 61
+ D++ V L + + S+ + L T VL ++ +
Sbjct: 69 RDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARN 128
Query: 62 LGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKF 93
L +T + +V++ A+ + +D EKF
Sbjct: 129 LIGVTTLFGVVLFAVALA-AYVIERDIQPEKF 159
>3snk_A Response regulator CHEY-like protein; P-loop containing
nucleoside triphosphate hydrolases, struct genomics;
2.02A {Mesorhizobium loti}
Length = 135
Score = 32.7 bits (75), Expect = 0.006
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
++++ DL + G + R W T+ ++
Sbjct: 60 PGIVIL-----DLGGGDLLGKPGIVEARALWATVPLIA 92
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 32.3 bits (73), Expect = 0.016
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 20/106 (18%)
Query: 7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLS-----------------VLRGLRLSW--TT 47
+F NI D++ + V + + +LR +LS
Sbjct: 269 FFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKG 328
Query: 48 MKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKF 93
+++L + +++ LG L F L I + +F+ + D +F
Sbjct: 329 LQILGQTLKASMRELGLLIFFLFIGVILFSSA-VYFAEADERDSQF 373
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein,
ALPH-beta sandwich, winged-helix, helix helix, DNA
binding protein; HET: DNA MSE; 1.50A {Thermotoga
maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Length = 225
Score = 31.6 bits (73), Expect = 0.021
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
MAL+ + D++++ D+M DG +L+ +R S VL+
Sbjct: 41 MALNEPF--------DVVIL-----DIMLPVHDGWEILKSMRESGVNTPVLM 79
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA
binding domain, phosphorylation; 1.58A {Mycobacterium
tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Length = 233
Score = 30.9 bits (71), Expect = 0.033
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
A N D IV+ D+ +DG+SV+ LR + V +
Sbjct: 46 SATENRP--------DAIVL-----DINMPVLDGVSVVTALRAMDNDVPVCV 84
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response
regulator, beryllium fluoride, transcription factor,
activated, virulence; 1.90A {Escherichia coli} SCOP:
c.23.1.1 PDB: 2pkx_A
Length = 121
Score = 30.5 bits (70), Expect = 0.035
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
D+ +V DL DGLS++R R + ++ +L+
Sbjct: 45 PDIAIV-----DLGLPDEDGLSLIRRWRSNDVSLPILV 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.052
Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 82 QLFSKDYTSEK-FAPDPVP 99
Q K S K +A D P
Sbjct: 20 QALKKLQASLKLYADDSAP 38
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Length = 138
Score = 28.7 bits (65), Expect = 0.18
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
DL++V + S+L ++ VL+
Sbjct: 61 CDLLIV-----SDQLVDLSIFSLLDIVKEQTKQPSVLI 93
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component
regulatory system, signaling protein; 1.75A
{Escherichia coli K12}
Length = 130
Score = 28.3 bits (64), Expect = 0.26
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVL 51
DL++ D+ ++GL +L +R VL
Sbjct: 52 PDLMIC-----DIAMPRMNGLKLLEHIRNRGDQTPVL 83
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein
structure initiative II (PSI II), structural genomics;
1.95A {Thermotoga maritima}
Length = 142
Score = 27.9 bits (63), Expect = 0.36
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 21/82 (25%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIY 74
DL+ VD+ + L+++R +R + KV ++S
Sbjct: 49 IDLV-----FVDVFEG-EESLNLIRRIREEFPDTKV---AVLSAYVDKDL---------- 89
Query: 75 IFAVIGMQLFSKDYTSEKFAPD 96
+ ++ + DY + F D
Sbjct: 90 --IINSVKAGAVDYILKPFRLD 109
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2,
protein struct initiative; 2.15A {Colwellia
psychrerythraea}
Length = 135
Score = 28.0 bits (63), Expect = 0.37
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
D+I ++DLM +DG+ V+R L + ++L
Sbjct: 47 QDII-----ILDLMMPDMDGIEVIRHLAEHKSPASLIL 79
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A
{Deinococcus radiodurans}
Length = 249
Score = 28.3 bits (64), Expect = 0.37
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 13/42 (30%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLR 42
A + DLI++ DL DG V++ LR
Sbjct: 76 KAREDHP--------DLILL-----DLGLPDFDGGDVVQRLR 104
>3rqi_A Response regulator protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Length = 184
Score = 28.0 bits (63), Expect = 0.44
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
F+ I V L GLS++ L ++L+
Sbjct: 52 FEFITVX-----LHLGNDSGLSLIAPLCDLQPDARILV 84
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE
PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Length = 116
Score = 27.0 bits (61), Expect = 0.54
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
+DL+ ++D+ + GL V +R K++L
Sbjct: 46 YDLV-----ILDIEMPGISGLEVAGEIRKKKKDAKIIL 78
>3crn_A Response regulator receiver domain protein, CHEY-; structural
genomics, signal regulator receiver domain; HET: PHD;
1.58A {Methanospirillum hungatei jf-1}
Length = 132
Score = 27.4 bits (61), Expect = 0.59
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 20/82 (24%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIY 74
F+L L + ++G +L MK I+++ +L N
Sbjct: 48 FNLA-----LFXIKLPDMEGTELLEKAHKLRPGMKK---IMVTGYASLEN---------- 89
Query: 75 IFAVIGMQLFSKDYTSEKFAPD 96
+V + + Y + P
Sbjct: 90 --SVFSLNAGADAYIMKPVNPR 109
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component
system, gene regulation, transcription factor, KDP
potassium transport system; 2.00A {Escherichia coli}
SCOP: c.23.1.1 PDB: 1zh4_A
Length = 121
Score = 27.0 bits (61), Expect = 0.61
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVL 51
DLI ++DL DG+ +R LR W+ + V+
Sbjct: 46 PDLI-----ILDLGLPDGDGIEFIRDLR-QWSAVPVI 76
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II),
NYSGXRC, 11025B, structural genomics; 2.21A
{Polaromonas SP}
Length = 140
Score = 26.8 bits (60), Expect = 0.81
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
+ + VDL DG+S++R LR
Sbjct: 51 YAAM-----TVDLNLPDQDGVSLIRALR 73
>3r0j_A Possible two component system response transcript positive
regulator PHOP; beta-alpha fold, winged
helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Length = 250
Score = 27.0 bits (59), Expect = 0.85
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 28/98 (28%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIG 60
A D +++ D+ +DG VLR LR L ++
Sbjct: 62 RARETRP--------DAVIL-----DVXMPGMDGFGVLRRLRADGIDAPALF---LTARD 105
Query: 61 ALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPV 98
+L + + G+ L DY ++ F+ + V
Sbjct: 106 SLQD------------KIAGLTLGGDDYVTKPFSLEEV 131
>4dad_A Putative pilus assembly-related protein; response regulator
receiver domain, CHEY-related protein, ST genomics;
2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Length = 146
Score = 26.2 bits (58), Expect = 1.5
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
FD++ ++D L+ + L + LL
Sbjct: 68 FDIL-----MIDGAALDTAELAAIEKLSRLHPGLTCLL 100
>1zgz_A Torcad operon transcriptional regulatory protein; two-component
system, gene regulation, transcription factor,
respiratory system; 1.80A {Escherichia coli} SCOP:
c.23.1.1
Length = 122
Score = 25.9 bits (58), Expect = 1.6
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
DLI++ D+ +GL + R LR
Sbjct: 47 VDLILL-----DINLPDENGLMLTRALR 69
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription
factor, sensory transduction, phosphate regula
transcription regulation; 1.45A {Escherichia coli} PDB:
2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Length = 127
Score = 25.9 bits (58), Expect = 1.9
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 13 NIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKV 50
DLI L+ M G+ ++ LR T +
Sbjct: 45 PWPDLI-----LLAWMLPGGSGIQFIKHLRRESMTRDI 77
>3lte_A Response regulator; structural genomics, PSI, protein structure
initiative, NYSG YORK structural genomix research
consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Length = 132
Score = 25.6 bits (57), Expect = 2.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
++ + DL +DGL V+R LR
Sbjct: 51 PAIMTL-----DLSMPKLDGLDVIRSLR 73
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory
system, transcription regulation, phosphorylation, OMPR
family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Length = 238
Score = 26.0 bits (58), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
DL+ L+DLM ++G+ V R LR
Sbjct: 50 PDLV-----LLDLMLPGMNGIDVCRVLR 72
>2oqr_A Sensory transduction protein REGX3; response regulator,
winged-helix-turn-helix, DNA-binding, 3D swapping, two
component system; 2.03A {Mycobacterium tuberculosis
H37RV}
Length = 230
Score = 25.1 bits (56), Expect = 3.5
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
D++ L+DLM + G V + LR
Sbjct: 49 ADIV-----LLDLMLPGMSGTDVCKQLR 71
>3t6k_A Response regulator receiver; flavodoxin-like, structural
genomics, joint center for struc genomics, JCSG,
protein structure initiative; HET: MSE; 1.86A
{Chloroflexus aurantiacus}
Length = 136
Score = 25.2 bits (56), Expect = 3.6
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 16 DLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKV 50
D + + D++ +DG ++ + +R T +
Sbjct: 50 DAL-----ICDVLLPGIDGYTLCKRVRQHPLTKTL 79
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown
function, uncharacterized protein, signal receiver
domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Length = 137
Score = 25.2 bits (56), Expect = 3.8
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIIS 57
LI ++DL + G VL + + V II +
Sbjct: 49 PQLI-----ILDLKLPDMSGEDVLDWINQNDIPTSV---IIAT 83
>2pln_A HP1043, response regulator; signaling protein; 1.80A
{Helicobacter pylori} PDB: 2hqo_A
Length = 137
Score = 24.8 bits (55), Expect = 3.9
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 17/52 (32%)
Query: 1 MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLL 52
+ +Y DL++V + LS + ++ +++ VL+
Sbjct: 57 LMDIRNY--------DLVMV-----SDK----NALSFVSRIKEKHSSIVVLV 91
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock,
transferase, response regulator, histidine protein
kinase; NMR {Synechococcus elongatus}
Length = 119
Score = 24.7 bits (55), Expect = 5.0
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 5/35 (14%)
Query: 16 DLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKV 50
+I L+ L +L+ LR
Sbjct: 47 IVI-----LMAWPPPDQSCLLLLQHLREHQADPHP 76
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional
regulatory protein, alpha/beta doubly wound fold,
phosphorylation; 1.60A {Bacillus subtilis} SCOP:
c.23.1.1
Length = 136
Score = 24.8 bits (55), Expect = 5.2
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
DLI ++D+M +DG+ V + LR
Sbjct: 48 PDLI-----VLDVMLPKLDGIEVCKQLR 70
>1xhf_A DYE resistance, aerobic respiration control protein ARCA;
two-component system, gene regulation, transcription
factor, anoxic redox control; 2.15A {Escherichia coli}
SCOP: c.23.1.1 PDB: 1xhe_A
Length = 123
Score = 24.3 bits (54), Expect = 5.9
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 13 NIFDLIVVTASLVDLMTEFVDGLSVLRGLR 42
+L+++ D+ +GL + R LR
Sbjct: 46 YDINLVIM-----DINLPGKNGLLLARELR 70
>3bre_A Probable two-component response regulator; protein-nucleotide
complex, signaling protein; HET: C2E; 2.40A
{Pseudomonas aeruginosa} PDB: 3i5a_A*
Length = 358
Score = 24.7 bits (54), Expect = 6.3
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
+I L DL+ VDGL++L R
Sbjct: 64 PTVI-----LQDLVMPGVDGLTLLAAYR 86
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE;
1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB:
3nns_A*
Length = 220
Score = 24.3 bits (54), Expect = 7.7
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
F ++ ++D+M G + R ++
Sbjct: 44 FHVV-----VLDVMLPDYSGYEICRMIK 66
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog,
signaling protein; 1.65A {Streptococcus pneumoniae}
SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A
1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Length = 120
Score = 23.9 bits (53), Expect = 7.7
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
D+I ++DLM +DGL V + +R
Sbjct: 46 PDII-----ILDLMLPEIDGLEVAKTIR 68
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm,
flagellar rotatio magnesium, metal-binding,
phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A
3h1e_A 3h1f_A
Length = 129
Score = 24.0 bits (53), Expect = 8.9
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLR 42
++ + D ++GL +++ +R
Sbjct: 52 TKVL-----ITDWNMPEMNGLDLVKKVR 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.143 0.427
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,539,697
Number of extensions: 79572
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 60
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.6 bits)