RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13561
         (99 letters)



>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
           pernix [TaxId: 56636]}
          Length = 132

 Score = 24.1 bits (52), Expect = 2.5
 Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 2   ALSNDYFQCGWNIFDLIVVTASLVDL-MTEFVDGLSVLRGLRL 43
              +        ++++  +  + +   +   + GL + R +RL
Sbjct: 60  KSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRL 102


>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 24.2 bits (52), Expect = 2.9
 Identities = 5/34 (14%), Positives = 14/34 (41%)

Query: 66  TFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
           T+V+V +     +    L  + Y++  +    + 
Sbjct: 181 TWVIVPMNNSVIIASDLLTVRAYSTGAWKTASIA 214


>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 140

 Score = 23.4 bits (50), Expect = 5.1
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 5/41 (12%)

Query: 15 FDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSII 55
           D++      +D+    +DGL  L  L        V++S +
Sbjct: 50 PDVL-----TLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSL 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.427 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 364,436
Number of extensions: 13757
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 17
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)