RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13563
(577 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 797 bits (2062), Expect = 0.0
Identities = 284/542 (52%), Positives = 364/542 (67%), Gaps = 78/542 (14%)
Query: 3 GTRLIGDAAKNQLTTNPENTVYDAKRLIGRDWTDATVQSDIKHFSFNVKEKNSKPHIEVN 62
RLIGDAAKNQ+ NP NTV+DAKRLIGR + DA VQSD+KH+ F V +P ++V
Sbjct: 47 TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVE 106
Query: 63 TGTSEGTKIFAPEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVI 122
TK F PEE+S+MVL KMKE AEAYLGK VT+AVVTVPAYFND+QRQATKDAG I
Sbjct: 107 YK--GETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTI 164
Query: 123 ARTHRDENINEAT------GRGPSLMDWTRKKERRNVLVFDL------------------ 158
A + INE T G +D ER NVL+FDL
Sbjct: 165 AGLNVLRIINEPTAAAIAYG-----LDKKVGAER-NVLIFDLGGGTFDVSILTIAAGIFE 218
Query: 159 -----------GKDLRKDKRTV-------QKLRRKDLRKDKRTVQKLRREVEKAKRALSS 200
G+D D R V ++ +KD+ ++KR V++LR E+AKR LSS
Sbjct: 219 VKSTAGDTHLGGEDF--DNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSS 276
Query: 201 NFQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVL 260
+ Q IEI+S +EG DF ++TRA+FEELN DLFR T+ PV+K L DA ++K + +IVL
Sbjct: 277 STQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVL 336
Query: 261 VGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQAGVLSGEQD--TDAIVLLDV 318
VGGSTRIPK+Q+L+++FFN KE ++ +NPDEAVAYGAAVQA +LSG++ ++LLDV
Sbjct: 337 VGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDV 396
Query: 319 NPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDNHLL 378
PL++GIET GGVMT LI RNT IPTK++Q F+T +DNQ V IQVYEGER MTKDN+LL
Sbjct: 397 TPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLL 456
Query: 379 GKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPDDID 438
GKF+LTGIPPAPRGVPQIEVTF+IDANGIL VSA D
Sbjct: 457 GKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAV------------------------D 492
Query: 439 KGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELESYAYSLKNQ 498
K TG + KI ITND+ RL+ +DI+RM+++AEK+ +D+K +++V ++N LESYA+++K
Sbjct: 493 KSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKAT 552
Query: 499 LQ 500
++
Sbjct: 553 VE 554
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 752 bits (1943), Expect = 0.0
Identities = 136/622 (21%), Positives = 253/622 (40%), Gaps = 75/622 (12%)
Query: 5 RLIGDAAKNQLTTNPENTVYDAKRLIGRDWTDATVQSDIKHFSFNV-KEKNSKPHIEVNT 63
R +G+ KN+ T+N +NTV + KR+IG D+ + + KHF+ + + + K EV
Sbjct: 47 RYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRF 106
Query: 64 GTSEGTKIFAPEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIA 123
+ +F+ +++AM + K+K+T + +T + VP ++ + QR DA IA
Sbjct: 107 AGEK--HVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIA 164
Query: 124 RTHRDENINEAT------GRGPSLMDWTRKKERRNVLVFDLG------------------ 159
+ +N+ T G + + +K R V D+G
Sbjct: 165 GLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPR-IVAFVDIGHSSYTCSIMAFKKGQLKV 223
Query: 160 -----------KDLRKDKRTV-------QKLRRKDLRKDKRTVQKLRREVEKAKRALSSN 201
+D D + + D+R++ + ++ EK K+ LS+N
Sbjct: 224 LGTACDKHFGGRDF--DLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSAN 281
Query: 202 FQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVLV 261
+ES D S L+R + EEL L +PV K L A ++ ++VD + ++
Sbjct: 282 TNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEII 341
Query: 262 GGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 321
GG+TRIP ++Q + E F K S +N DEA+A GAA + S D++P
Sbjct: 342 GGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPY 400
Query: 322 TMGIETVGGV----MTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDNHL 377
++ V ++ P + P+ K + D + P T +
Sbjct: 401 SVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ-- 458
Query: 378 LGKFDLTGI--PPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPD 435
+ +++TG+ P VP +++ D +G+ + +
Sbjct: 459 IANWEITGVQLPEGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAG------------- 504
Query: 436 DIDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELESYAYSL 495
D T K+ + I L ++ +I+ + DK + E + +N LE Y Y+L
Sbjct: 505 -SDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTL 563
Query: 496 KNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWL-DENQDADAPEFQKKKKELEDVVQPII 554
+ +L +++ +DAEKT ++ ++ +WL DE D+ ++ K +EL + I
Sbjct: 564 RGKL--EEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIR 621
Query: 555 AKLYQGAGGAPPPPGGDAGKDE 576
+ +
Sbjct: 622 GRYLAKEEEKKQAIRSKQEASQ 643
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 598 bits (1545), Expect = 0.0
Identities = 246/604 (40%), Positives = 337/604 (55%), Gaps = 92/604 (15%)
Query: 3 GTRLIGDAAKNQLTTNPENTVYDAKRLIGRDWTDATVQSDIKHFSFN-VKEKNSKPHIEV 61
G L+G AK Q TNP+NT++ KRLIGR + D VQ D+ F + N +EV
Sbjct: 46 GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV 105
Query: 62 NTGTSEGTKIFAPEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGV 121
+ AP +ISA VL KMK+TAE YLG+ VT AV+TVPAYFNDAQRQATKDAG
Sbjct: 106 KG------QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 159
Query: 122 IARTHRDENINEATGRGPSL---MDWTRKKERRNVLVFDLGK--------DLRK------ 164
IA INE T +L +D + R + V+DLG ++ +
Sbjct: 160 IAGLEVKRIINEPTAA--ALAYGLD--KGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKT 215
Query: 165 -----------------DKRTVQKLRRK-------DLRKDKRTVQKLRREVEKAKRALSS 200
D R + L + DLR D +Q+L+ EKAK LSS
Sbjct: 216 FEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSS 275
Query: 201 NFQVKIEIESFFEGDD-----FSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDV 255
Q + + + D + +TRAK E L DL +++P++ L+DA ++ D+
Sbjct: 276 AQQTDVNL-PYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI 334
Query: 256 DEIVLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVL 315
D+++LVGG TR+P VQ+ V EFF KEP + VNPDEAVA GAAVQ GVL+G D ++L
Sbjct: 335 DDVILVGGQTRMPMVQKKVAEFFG-KEPRKDVNPDEAVAIGAAVQGGVLTG--DVKDVLL 391
Query: 316 LDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDN 375
LDV PL++GIET+GGVMT LI +NT IPTK SQ+FSTA DNQ+ VTI V +GER DN
Sbjct: 392 LDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADN 451
Query: 376 HLLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPD 435
LG+F+L GI PAPRG+PQIEVTF+IDA+GIL VSA+DK +G ++KI I
Sbjct: 452 KSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG----- 506
Query: 436 DIDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELESYAYSL 495
L D+I +M++DAE A+ D+K E V+ RN+ + +S
Sbjct: 507 --------------------LNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHST 546
Query: 496 KNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIA 555
+ Q+++ G K+ +KT +E A+ ++ + +D A + K +EL V Q ++
Sbjct: 547 RKQVEE---AGDKLPADDKTAIESALTA-LETALKGEDKAA--IEAKMQELAQVSQKLME 600
Query: 556 KLYQ 559
Q
Sbjct: 601 IAQQ 604
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 544 bits (1403), Expect = 0.0
Identities = 231/528 (43%), Positives = 300/528 (56%), Gaps = 104/528 (19%)
Query: 3 GTRLIGDAAKNQLTTNPENTVYDAKRLIGRDWTDATVQSDIKHFSFNVKEKNSKPHIEVN 62
G RL+G+ AK Q TNP NT+ KR +G D+ +E+
Sbjct: 45 GERLVGEVAKRQAITNP-NTIISIKRHMGTDYK-----------------------VEIE 80
Query: 63 TGTSEGTKIFAPEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVI 122
K + P+EISA++L +K AE YLG+ VT AV+TVPAYFNDAQRQATKDAG I
Sbjct: 81 G------KQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRI 134
Query: 123 ARTHRDENINEATGRGPSLMDWTRKKERRNVLVFDLG----------------------- 159
A + INE T +L K+E + +LV+DLG
Sbjct: 135 AGLEVERIINEPTA--AALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAG 192
Query: 160 ------KDLRKDKRTVQKLRRK-------DLRKDKRTVQKLRREVEKAKRALSSNFQVKI 206
D D+ + L + DL KDK +Q+L+ EKAK+ LS Q +I
Sbjct: 193 DNHLGGDDF--DQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQI 250
Query: 207 EIESFFEGDD-----FSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVLV 261
+ F ++ TLTRAKFEEL+ L TM PV++ L+DA + D+D+++LV
Sbjct: 251 SL-PFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILV 309
Query: 262 GGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 321
GGSTRIP VQ+ +K KEP +GVNPDE VA GAA+Q GV++G + +VLLDV PL
Sbjct: 310 GGSTRIPAVQEAIKRELG-KEPHKGVNPDEVVAIGAAIQGGVIAG--EVKDVVLLDVTPL 366
Query: 322 TMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDNHLLGKF 381
++GIET+GGV TKLI RNT IPT KSQ+F+TAADNQ TV I V +GERPM DN LG+F
Sbjct: 367 SLGIETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRF 426
Query: 382 DLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPDDIDKGT 441
LTGIPPAPRGVPQIEVTF+IDANGI+ V A+D GT ++ I I +
Sbjct: 427 QLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG----------- 475
Query: 442 GNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELE 489
L+ ++I RMIK+AE+ A+ D+K KE E RNE +
Sbjct: 476 --------------LSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 486 bits (1254), Expect = e-170
Identities = 182/348 (52%), Positives = 227/348 (65%), Gaps = 63/348 (18%)
Query: 5 RLIGDAAKNQLTTNPENTVYDAKRLIGRDWTDATVQSDIKHFSFNVKEKNSKPHIEVNTG 64
RLIGDAAKNQ+ NP+NT++D KRLIG + D +VQ DIKH FNV K+ KP +EV+
Sbjct: 63 RLIGDAAKNQVAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVK 122
Query: 65 TSEGTKIFAPEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIA- 123
K+F PEEIS M+LGKMK+ AE YLG KVTHAVVTVPAYFNDAQRQATKDAG IA
Sbjct: 123 --GEKKVFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAG 180
Query: 124 ----RTHRDENINEAT------GRGPSLMDWTRKKERRNVLVFDL--------------- 158
R +NE T G +D + + ++V+DL
Sbjct: 181 LNVLRI-----VNEPTAAAIAYG-----LD--KSDKEHQIIVYDLGGGTFDVSLLSIENG 228
Query: 159 --------------GKDLRKDKRTV-------QKLRRKDLRKDKRTVQKLRREVEKAKRA 197
G+D D + V +K D+ + + + KL+RE EKAKRA
Sbjct: 229 VFEVQATSGDTHLGGEDF--DYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRA 286
Query: 198 LSSNFQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDE 257
LSS +IEI+SF +G D SETLTRAKFEELN+DLF+ T+KPV+KVL+D+ + KKDVD+
Sbjct: 287 LSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDD 346
Query: 258 IVLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQAGVLS 305
IVLVGGSTRIPKVQQL++ +F+ K+ S+G+NPDEAVAYGAAVQAGVLS
Sbjct: 347 IVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 485 bits (1251), Expect = e-169
Identities = 175/345 (50%), Positives = 221/345 (64%), Gaps = 50/345 (14%)
Query: 5 RLIGDAAKNQLTTNPENTVYDAKRLIGRDWTDATVQSDIKHFSFNVKEKNSKPHIEVNTG 64
RLIGDAAKNQ+ NP NT++DAKRLIGR + DATVQSD+KH+ F V + KP ++V
Sbjct: 68 RLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYK 127
Query: 65 TSEGTKIFAPEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAR 124
TK F PEEIS+MVL KMKE AEAYLG KV AV+TVPAYFND+QRQATKDAG I
Sbjct: 128 --GETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITG 185
Query: 125 THRDENINEAT------GRGPSLMDWTRKKERRNVLVFDL-------------------- 158
+ INE T G L +NVL+FDL
Sbjct: 186 LNVLRIINEPTAAAIAYG----LDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVK 241
Query: 159 ---------GKDLRKDKRTV-------QKLRRKDLRKDKRTVQKLRREVEKAKRALSSNF 202
G+D D R V ++ +KD+ +KR V++LR E+AKR LSS+
Sbjct: 242 STAGDTHLGGEDF--DNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSST 299
Query: 203 QVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVLVG 262
Q IEI+S +EG DF ++TRA+FEELN DLFR T++PV+K L DA ++K + EIVLVG
Sbjct: 300 QASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVG 359
Query: 263 GSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQAGVLSGE 307
GSTRIPK+Q+L+++FFN KE ++ +NPDEAVAYGAAVQA +L G+
Sbjct: 360 GSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 331 bits (852), Expect = e-109
Identities = 139/350 (39%), Positives = 187/350 (53%), Gaps = 59/350 (16%)
Query: 3 GTRLIGDAAKNQLTTNPENTVYDAKRLIGRDWTDATVQSDIKHFSFN-VKEKNSKPHIEV 61
G L+G AK Q TNP+NT++ KRLIGR + D VQ D+ F + N +EV
Sbjct: 46 GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV 105
Query: 62 NTGTSEGTKIFAPEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGV 121
+ AP +ISA VL KMK+TAE YLG+ VT AV+TVPAYFNDAQRQATKDAG
Sbjct: 106 KG------QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 159
Query: 122 IARTHRDENINEATGRGPSL---MDWTRKKERRNVLVFDLGK--------DLRK------ 164
IA INE T +L +D + R + V+DLG ++ +
Sbjct: 160 IAGLEVKRIINEPTAA--ALAYGLD--KGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKT 215
Query: 165 -----------------DKRTV-------QKLRRKDLRKDKRTVQKLRREVEKAKRALSS 200
D R + +K + DLR D +Q+L+ EKAK LSS
Sbjct: 216 FEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSS 275
Query: 201 NFQVKIEIESFFEGDD-----FSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDV 255
Q + + + D + +TRAK E L DL +++ ++ L+DA ++ D+
Sbjct: 276 AQQTDVNL-PYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDI 334
Query: 256 DEIVLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQAGVLS 305
D+++LVGG TR+P VQ+ V EFF KEP + VNPDEAVA GAAVQ GVL+
Sbjct: 335 DDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 294 bits (755), Expect = 3e-98
Identities = 118/173 (68%), Positives = 133/173 (76%), Gaps = 24/173 (13%)
Query: 317 DVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDNH 376
DVNPLT+GIETVGGVMTKLI RNTVIPTKKSQ+FSTAAD+Q+ V+I +YEGERPM DNH
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 377 LLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPDD 436
LG FD+TGIPPAPRGVPQIEVTFEID NGIL VSAE
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAE----------------------- 100
Query: 437 IDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELE 489
DKGTGNK K+ ITND NRL+P+DI+RMI DA+KFA DD+ KE+VE+RNELE
Sbjct: 101 -DKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 294 bits (754), Expect = 4e-98
Identities = 110/173 (63%), Positives = 128/173 (73%), Gaps = 24/173 (13%)
Query: 317 DVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDNH 376
DVN LT+GIET GGVMT LI RNT IPTKKSQIFSTA DNQ TV I+VYEGER M+KDN+
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 377 LLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPDD 436
LLGKF+LTGIPPAPRGVPQIEVTF +DANGIL+VSA
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSAT----------------------- 100
Query: 437 IDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELE 489
DKGTG E I ITND+ RLT ++IDRM+++AEKFA +D +K +VE+RN+LE
Sbjct: 101 -DKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 294 bits (754), Expect = 4e-98
Identities = 99/173 (57%), Positives = 119/173 (68%), Gaps = 24/173 (13%)
Query: 317 DVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDNH 376
DV PL++GIET GGVMT LI RNT IPTK + F+T ADNQ V+IQVYEGER MT+DNH
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 377 LLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPDD 436
LG F+L+GIPPAPRGVPQIEVTF IDANGIL VSAE
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAE----------------------- 100
Query: 437 IDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELE 489
DK TG +I I N++ RLT DIDRM+ +A++F +D + +ERV+ARN+LE
Sbjct: 101 -DKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 285 bits (731), Expect = 1e-93
Identities = 104/250 (41%), Positives = 149/250 (59%), Gaps = 31/250 (12%)
Query: 313 IVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMT 372
++LLDV PL++GIET+GGVMT LI +NT IPTK SQ+FSTA DNQ+ VTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 373 KDNHLLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRL 432
DN LG+F+L GI PAPRG+PQIEVTF+IDA+GIL VSA+DK +G ++KI I
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-- 118
Query: 433 TPDDIDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELESYA 492
L D+I +M++DAE A+ D+K +E V+ RN+ +
Sbjct: 119 -----------------------LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLL 155
Query: 493 YSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQP 552
+S + Q+++ G K+ +KT +E A+ ++ + +D A + K +EL V Q
Sbjct: 156 HSTRKQVEE---AGDKLPADDKTAIESALTA-LETALKGEDKAA--IEAKMQELAQVSQK 209
Query: 553 IIAKLYQGAG 562
++ Q
Sbjct: 210 LMEIAQQQHA 219
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 270 bits (692), Expect = 2e-88
Identities = 99/201 (49%), Positives = 129/201 (64%), Gaps = 27/201 (13%)
Query: 300 QAGVLSGEQDTDAIVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNT 359
L + +DV PL++GIET+GGV TKLI RNT IPTKKSQ+FSTAAD Q
Sbjct: 9 SGVDLGT--ENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQ 66
Query: 360 VTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGN 419
V I+V +GER M DN LLG+F L GIPPAPRGVPQIEVTF+IDANGI+ VSA+DKGTG
Sbjct: 67 VEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGR 126
Query: 420 KEKIVITNDQNRLTPDDIDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLK 479
+++IVI + L+ DDI+ M+K+AEK+A++D++ K
Sbjct: 127 EQQIVIQSSGG-------------------------LSKDDIENMVKNAEKYAEEDRRKK 161
Query: 480 ERVEARNELESYAYSLKNQLQ 500
ERVEA N E + + +++
Sbjct: 162 ERVEAVNMAEGIIHDTETKME 182
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 269 bits (689), Expect = 2e-87
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 31/246 (12%)
Query: 316 LDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDN 375
+DV PL++G+ET+GG++ K+IPRNT IP ++Q F+T D Q ++I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 376 HLLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPD 435
L +F L GIP P G I VTF++DA+G+L V+A +K TG + I +
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQV---------- 110
Query: 436 DIDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELESYAYSL 495
K + LT +I MIKD+ +A+ D K + E + E SL
Sbjct: 111 ---KPSYG------------LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESL 155
Query: 496 KNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIA 555
L A ++ AE+ +++A + + + D DA E + K ++ Q A
Sbjct: 156 HGALAA---DAALLSAAERQVIDDAAAH-LSEVAQGDDVDAIE--QAIKNVDKQTQDFAA 209
Query: 556 KLYQGA 561
+ +
Sbjct: 210 RRMDQS 215
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 242 bits (620), Expect = 4e-78
Identities = 94/173 (54%), Positives = 116/173 (67%), Gaps = 25/173 (14%)
Query: 317 DVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDNH 376
DV PL++GIET+GG+MTKLI RNT IPTKKSQ+FSTAAD Q V I+V++GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 377 LLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPDD 436
LLG+F L GIPPAPRGVPQ+EVTF+IDANGI+ VSA D+GTG +++IVI +
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG------ 117
Query: 437 IDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELE 489
L+ D I+ MIK+AEK A +D K KE VE N+ E
Sbjct: 118 -------------------LSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 221 bits (564), Expect = 4e-70
Identities = 74/131 (56%), Positives = 94/131 (71%), Gaps = 2/131 (1%)
Query: 296 GAAVQAGVLSGEQDTDAIVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAAD 355
G++ G ++DV PL++GIET+GGVMT LI +NT IPTK SQ+FSTA D
Sbjct: 2 GSSHHHHH-HGLVPRG-SHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAED 59
Query: 356 NQNTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDK 415
NQ+ VTI V +GER DN LG+F+L GI PAPRG+PQIEVTF+IDA+GIL VSA+DK
Sbjct: 60 NQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDK 119
Query: 416 GTGNKEKIVIT 426
+G ++KI I
Sbjct: 120 NSGKEQKITIK 130
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 123 bits (310), Expect = 9e-34
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 468 AEKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKW 527
+ + LESYA++LK ++D +KL KI+ +K +E+ D+ +KW
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIED-EKLKDKISPEDKKKIEDKCDEILKW 61
Query: 528 LDENQDADAPEFQKKKKELEDVVQPIIAKLYQGAGGAPPPPGGDAG 573
LD NQ A+ EF+ ++K+LE + PII+KLYQ AGGAPP
Sbjct: 62 LDSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGA 107
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 117 bits (294), Expect = 2e-31
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 477 KLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWLDENQDADA 536
ERV A+N LESYA+++K+ ++D + L KI++A+K + + + I WLD N A+
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVED-EGLKGKISEADKKKVLDKCQEVISWLDANTLAEK 61
Query: 537 PEFQKKKKELEDVVQPIIAKLYQGAGGAPPPPGGDAG 573
EF+ K+KELE V PII+ LYQGAGG P G G
Sbjct: 62 DEFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQG 98
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 111 bits (280), Expect = 1e-29
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 481 RVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWLDENQDADAPEFQ 540
+ LESYA+++K ++D +KL KI D +K + + ++ I WLD+NQ A+ EF+
Sbjct: 2 VPRGSHMLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFE 60
Query: 541 KKKKELEDVVQPIIAKLYQGAGGAPPPPGGDAG 573
++KELE V PII KLYQ AGG P G
Sbjct: 61 HQQKELEKVCNPIITKLYQSAGGMPGGMPGGFP 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 9e-13
Identities = 87/626 (13%), Positives = 192/626 (30%), Gaps = 172/626 (27%)
Query: 42 DI-KHFSFNVKEKNSKPHIEVNTGTSEGTK-IFAPEEISAMVLGKMKETAEAYL------ 93
DI F + ++ + K I + EEI +++ K + L
Sbjct: 20 DILSVFEDAFVDNFDCKDVQ------DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 94 -GKKVTHAVVTVPAYFNDAQRQATKDAGVIARTHRDENINEATGRGPSLMDWTRKKERRN 152
+++ V + + R + + + E R PS M E+R+
Sbjct: 74 KQEEM------VQKFVEEVLR---INYKFLMSPIKTEQ------RQPS-MMTRMYIEQRD 117
Query: 153 VL-----VFDLGKDLRKDKRTVQKLRRKDLRKDKRTVQKLRRE----VE------K---A 194
L VF K V R + K ++ + +LR ++ K A
Sbjct: 118 RLYNDNQVFA--------KYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 195 KRALSS-------NFQV-------------KIEI---------ESFFEGDDFSETLTRAK 225
S +F++ +E+ ++ D S + + +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLR 226
Query: 226 FEELNMDLFRATMKPVQK----VLEDADMNKKDVD--EI---VLVGGSTRIPKVQQLVKE 276
+ +L R + VL + N K + + +L+ +TR +V +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILL--TTRFKQVTDFLSA 283
Query: 277 F----FNNKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIETVGGVM 332
+ S + PDE + + L +L NP + I + +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKS----LLLKYLDCRPQDLPREVLTTNPRRLSI--IAESI 337
Query: 333 TKLIPR----NTVIPTKKSQIFSTAADNQNTVTIQ-VYEGERPMTKDNHLLGKF-DLTGI 386
+ V K + I ++ + + +++ L F I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----------RLSVFPPSAHI 387
Query: 387 PPAPRGVPQI------EVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPDDIDKG 440
P + + + + N + + S +K + I I + L ++
Sbjct: 388 PTI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEY 443
Query: 441 TGNKEKIVITN-------DQNRLTPDDID-----------RMIKDAEKFAD------DDK 476
+ ++ + D + L P +D + I+ E+ D +
Sbjct: 444 A--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 477 KLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWLDENQDADA 536
L++++ + + + S+ N LQ I D + E ++ + +L +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND-PKYERLVNAILDFLPK------ 554
Query: 537 PEFQKKKKELEDVVQPIIAKLYQGAG 562
E + D+++ IA + +
Sbjct: 555 IEENLICSKYTDLLR--IALMAEDEA 578
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 57.1 bits (137), Expect = 5e-09
Identities = 22/221 (9%), Positives = 64/221 (28%), Gaps = 15/221 (6%)
Query: 90 EAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIARTHRDENINEATGRGPSLMDW-TRKK 148
Y + + + +++ T + G + + E+ + +
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIP---AGYEVLQELD 161
Query: 149 ERRNVLVFDLGK-----DLRKDKRTVQKLRRKDLRKDKRTVQKLRREVEKAKRALSSNFQ 203
E ++L+ DLG K + D V ++ R S++
Sbjct: 162 ELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYL 221
Query: 204 VKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVLVGG 263
I + + + + + + ++ +++ + + ++++GG
Sbjct: 222 ADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGG 281
Query: 264 STRIPKVQQLVKEFFNNKEPSRGV---NPDEAVAYGAAVQA 301
+ + VK+ R N + G +
Sbjct: 282 GAEL--ICDAVKKHT-QIRDERFFKTNNSQYDLVNGMYLIG 319
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 54.4 bits (130), Expect = 4e-08
Identities = 38/295 (12%), Positives = 82/295 (27%), Gaps = 41/295 (13%)
Query: 33 DWTDATVQSDIKHFSFNVKEKN---SKPHIEVNTGTSEGTKIFAPEEISAMVLGKMKETA 89
+ + I S + + K N +G A +E ++ + E+
Sbjct: 53 ETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIRVPQGDGRLASKEAFPLIAAALWESG 112
Query: 90 EAYLGKKVTHAVVT-VPAYFNDAQRQATKDA------------GVIARTHRDENINEATG 136
G V + + P D + +A K+A G + + + I G
Sbjct: 113 IHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQG 172
Query: 137 RGP---SLMDWTRKKERRNVLVFDLG-----------KDLRKDKRTVQKLRRKDLRKDKR 182
G L +++ +V D+G D+ L+
Sbjct: 173 VGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISA 232
Query: 183 TVQKLRREVEKAKRALSSNFQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQ 242
+K+ +E + + + + E + L ++ ++
Sbjct: 233 LSRKIAKETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILED-----LANRIIENIR 287
Query: 243 KVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPSRGV-NPDEAVAYG 296
L V ++ VGG + + + +E + A A G
Sbjct: 288 LNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 47.0 bits (112), Expect = 1e-05
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 232 DLFRATM-------KPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPS 284
+L RA + + +++ + I+L+GG + ++ L
Sbjct: 398 NLARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSILG--MDV 452
Query: 285 RGVNPDEAVAYGAAVQAGV-LSGEQDTDAI 313
DE VA GAA QA LSGE + A
Sbjct: 453 TRPATDEYVAIGAARQAAWVLSGETEPPAW 482
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-05
Identities = 36/260 (13%), Positives = 70/260 (26%), Gaps = 92/260 (35%)
Query: 159 GKDLRKDKRTVQKLRRKDLRKDKRTVQKLR-------REVEKAK---------RALSSNF 202
G DL K + Q + R D + + N+
Sbjct: 1632 GMDLYKTSKAAQDVWN---RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 203 QVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLED------ADMNKKDVD 256
+ E+ +G +E + F+E+N T + + +L A
Sbjct: 1689 S-AMIFETIVDGKLKTEKI----FKEINEHSTSYTFRSEKGLLSATQFTQPA-------- 1735
Query: 257 EIVLVGGSTRIPKVQQLVKEFFNNKEPSRGVNP-DEAVA------YGA-AVQAGVLSGEQ 308
+ L+ + + +K +G+ P D A Y A A A V+S E
Sbjct: 1736 -LTLMEKA-----AFEDLKS--------KGLIPADATFAGHSLGEYAALASLADVMSIE- 1780
Query: 309 DTDAIVLL------------------------DVNPLTMGIETVGGVMTKLIPRNTVIPT 344
+ ++ +NP + + ++ R +
Sbjct: 1781 --SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER---VGK 1835
Query: 345 KKSQIFSTAADNQNTVTIQV 364
+ + N N Q
Sbjct: 1836 RTGWLVEIV--NYNVENQQY 1853
Score = 38.5 bits (89), Expect = 0.007
Identities = 50/297 (16%), Positives = 93/297 (31%), Gaps = 89/297 (29%)
Query: 194 AKRALS---SNFQVKIEI--ESFFEG----DDFSETL---TR---------------AKF 226
+ R L+ + + + + SFF + F++ L T KF
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 227 --------EELNMDLFRATMKPVQKVLEDADMNKKDVDEIV---LVGGSTRIPKVQQLVK 275
E + F + E+ + D+ + L T + K ++L+K
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 276 EFFN-----NKEPSRGVNPD--EAVAYGAAVQAGVLSGEQ-DTDAIV--LLD-------- 317
+ + + N AV G A + G Q +TD L D
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-QGNTDDYFEELRDLYQTYHVL 183
Query: 318 VNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDNHL 377
V L I+ +++LI ++F+ + + P ++L
Sbjct: 184 VGDL---IKFSAETLSELIRT----TLDAEKVFTQGLNILEWLE---NPSNTP--DKDYL 231
Query: 378 LGKFDLTGIPPAPRGVPQIEVT----FEIDANGILQVSAED-----KG-TGNKEKIV 424
L P P I V + + A +L + + KG TG+ + +V
Sbjct: 232 LS---------IPISCPLIGVIQLAHYVVTAK-LLGFTPGELRSYLKGATGHSQGLV 278
Score = 35.0 bits (80), Expect = 0.086
Identities = 75/482 (15%), Positives = 138/482 (28%), Gaps = 165/482 (34%)
Query: 6 LIGDAAK--NQLTTNPENTVYDAKRLIGR-----DW-TDATVQSDIKHF-----SFNVKE 52
LI +A+ ++L DA+++ + +W + + D + S
Sbjct: 187 LIKFSAETLSELIRTTL----DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---- 238
Query: 53 KNSKPHIEVNTGTSEGTKIFAPEEISAMVLG----KMKETAEAYLGKKVTHAVVTVPAYF 108
P I V A ++A +LG +++ + G + +VT
Sbjct: 239 ----PLIGV---IQ-----LAHYVVTAKLLGFTPGELRSYLKGATG--HSQGLVT----- 279
Query: 109 NDAQRQATKDAGVIARTHRDENINEATGRGPSLMDW--TRKKERRNVLVFDLGKDLRKDK 166
A IA T E+ + + +++ + R E + +D
Sbjct: 280 ----------AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP--SILEDS 327
Query: 167 RTVQK------LRRKDLRKDKRTVQKLRREVEKAKRALSSNFQVKIEIESFFEGDD---- 216
+ L +L +++ VQ V K L + QV+I S G
Sbjct: 328 LENNEGVPSPMLSISNLTQEQ--VQDY---VNKTNSHLPAGKQVEI---SLVNGAKNLVV 379
Query: 217 --FSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLV 274
++L LN+ L R K D ++ + S R K
Sbjct: 380 SGPPQSLYG-----LNLTL-RK-----AKAPSGLDQSR--------IPFSERKLKF---S 417
Query: 275 KEF------FNNKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIE-T 327
F F++ + + V + + + + T
Sbjct: 418 NRFLPVASPFHSH-------------LLVPASDLIN--KDLVKNNVSFNAKDIQIPVYDT 462
Query: 328 VGG----VMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDNHLLGKFDL 383
G V++ I V I + T K H+L D
Sbjct: 463 FDGSDLRVLSGSISERIV-----DCIIRLPVKWETTT----------QFKATHIL---DF 504
Query: 384 TGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPDDIDKGTGN 443
G P G + G+L GTG ++++ + DD G
Sbjct: 505 -G----PGGASGL---------GVL-THRNKDGTG--VRVIVAGTLDINPDDDY----GF 543
Query: 444 KE 445
K+
Sbjct: 544 KQ 545
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 44.9 bits (107), Expect = 3e-05
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 214 GDDFSETLTRA------KFEELNMDL---------FRATMKPVQKVLEDADMNKKDVDEI 258
G S L + + E + D R ++ + ++++ N +
Sbjct: 171 GTHLSLVLAGSYKIPFEEAETIKKDFSRHREIMRVVRPVIEKMALIVKEVIKNYDQTLPV 230
Query: 259 VLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQA 301
+VGG+ + + F KE ++P G A+
Sbjct: 231 YVVGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVTPLGIALFG 272
Score = 42.6 bits (101), Expect = 2e-04
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 76 EISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIA 123
+ ++ ++K E LG ++ A +P +A A
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGA 118
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 232 DLFRATM-------KPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPS 284
+L RA + V+ + + L+GG R +Q++ + ++
Sbjct: 360 ELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISG-QQLD 415
Query: 285 RGVNPDEAVAYGAAVQAGVLSGEQDT 310
D A GAA A + + + +
Sbjct: 416 YRTGGDVGPALGAARLAQIAANPEKS 441
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 39.8 bits (93), Expect = 0.002
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 4/112 (3%)
Query: 190 EVEKAKRALSSNFQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLE--D 247
E+ KR + E + D E + + + + + +++ LE
Sbjct: 240 AAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFR 299
Query: 248 ADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAV 299
+ + + L+GG +++ + L+ + VNP EAVA
Sbjct: 300 IQLEEASPEVGYLLGGGSKLRGLASLLTDTLGV--NLEPVNPWEAVAVDPKR 349
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 37.7 bits (87), Expect = 0.007
Identities = 22/221 (9%), Positives = 57/221 (25%), Gaps = 42/221 (19%)
Query: 99 HAVVTVPA--YFNDAQRQATKDAGVIARTHRDENINEATGRG-------------PSLMD 143
V+ P N ++ +D I + L
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDY--IKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFL 164
Query: 144 WTRKKERRNVLVFDLGKDLRKDKRTVQKLRRKDLRKDKRT-----------VQKLRREVE 192
+ +NV V D G + ++ + + ++ +
Sbjct: 165 EQENFKNKNVAVIDFGG------LNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALT 218
Query: 193 KAKRALSSNFQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNK 252
+ + G + + + +K K++E
Sbjct: 219 DLNNGNLITNEQAESALN--NGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKL 276
Query: 253 KDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAV 293
+D ++ +GG+T+ +KE + P+ + + +
Sbjct: 277 DQLDSLIFIGGTTQ------KLKEQISKTYPNNSIITNNSQ 311
>1khv_A RNA-directed RNA polymerase; RNA-dependent RNA polymerase,
transferase; 2.50A {Rabbit hemorrhagic disease virus}
SCOP: e.8.1.4 PDB: 1khw_A
Length = 516
Score = 38.2 bits (88), Expect = 0.007
Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 21/183 (11%)
Query: 403 DANGILQVSAEDKGTGNKEKIVITNDQNRLTPDDIDKGTGNKEKIVITNDQNRLTPDDID 462
+ + G + + ++ + P D+ + ++
Sbjct: 7 GEPIDYRGITAHRLVGAEPRPPVSGTRYAKVPGVPDEYKTGYRPANLGRSDPDSDKSLMN 66
Query: 463 RMIKDAEKFADDDKKLKERVEARNE-LESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAI 521
+K+ + + + K ++ +E +E A + L+ K + A
Sbjct: 67 IAVKNLQVYQQEPK-----LDKVDEFIERAAADVLGYLRFLT----KGERQANLNFKAAF 117
Query: 522 DDKIKWLDENQDADAPEFQKKK-----KELEDVVQPIIAKLYQGA--GGAPPPPGGDAGK 574
+ LD + KK ++ V+ + K + A G A K
Sbjct: 118 NT----LDLSTSCGPFVPGKKIDHVKDGVMDQVLAKHLYKCWSVANSGKALHHIYACGLK 173
Query: 575 DEL 577
DEL
Sbjct: 174 DEL 176
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 36.8 bits (86), Expect = 0.016
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 232 DLFRATM-------KPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPS 284
L+RA + + VL+D G TR ++ + P
Sbjct: 374 HLWRALLEAVALAFRHHVAVLDDIGH---APQRFFASDGGTRSRVWMGIMADVLQ--RPV 428
Query: 285 RGVNPDEAVAYGAAVQAGVLSGEQDTDAIV 314
+ + A GAA A + G+ V
Sbjct: 429 QLLANPLGSAVGAAWVAAIGGGDDLGWDDV 458
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.016
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 52 EKNSKPHIEVNTGTSEGTKIFAPEEISAMVLGKMKETAE 90
EK + ++ S K++A + SA L +K T E
Sbjct: 18 EKQALKKLQ----AS--LKLYADD--SAPALA-IKATME 47
Score = 28.0 bits (61), Expect = 5.2
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 12/37 (32%)
Query: 267 IPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQAGV 303
+ K+Q +K + D A A A++A +
Sbjct: 22 LKKLQASLKLY----------ADDSAPAL--AIKATM 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.017
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 28/97 (28%)
Query: 462 DRMIKDAEKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAI 521
DR+ ++ E +K +E R LQ+ D + + ++ +
Sbjct: 78 DRLTQEPESI----RKWREEQRKR-------------LQELDAASKVMEQEWREKAKKDL 120
Query: 522 DD--------KIKWLDENQDADAPEFQKKKKELEDVV 550
++ K N+ AD F ++ D++
Sbjct: 121 EEWNQRQSEQVEKNKINNRIADK-AFYQQPD--ADII 154
Score = 35.1 bits (80), Expect = 0.032
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 448 VITNDQNRLTPDDI-----DRMIKDAEKFADDDKKLKE-RVEARNELESYAYSLKNQLQD 501
+ D+ P+ I ++ + E A +E R +A+ +LE + +++ +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW-NQRQSEQVE 132
Query: 502 KDKLGAKITDAEKTTMEEAIDDKI 525
K+K+ +I A+K ++ D I
Sbjct: 133 KNKINNRI--ADKAFYQQPDADII 154
Score = 31.7 bits (71), Expect = 0.45
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 16/72 (22%)
Query: 160 KDLRKDKRTVQKLR---RKDLR-KDKRTVQKLRREVEKAKRALSSNFQVKIEIESFFEGD 215
L ++ +++K R RK L+ D + + EKAK+ ++E + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK----------DLEEWNQ-- 125
Query: 216 DFSETLTRAKFE 227
SE + + K
Sbjct: 126 RQSEQVEKNKIN 137
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 36.5 bits (85), Expect = 0.025
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 19/107 (17%)
Query: 232 DLFRATMKPVQKVLE----------DADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNK 281
+ A VLE + + + V + +VGG R +++ + N
Sbjct: 378 QILLA-------VLEGAALSLRWCAEL-LGMEKVGLLKVVGGGARSEAWLRMIADNLN-V 428
Query: 282 EPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIETV 328
+ G A A V + L + + +
Sbjct: 429 SLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNIL 475
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.7 bits (77), Expect = 0.21
Identities = 15/89 (16%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 469 EKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWL 528
+ +++++ ++ + +++ L+ QL++++ K+ EK T + I +
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL-QLEKVTADGKIKKMEDDI 992
Query: 529 DENQDADAPEFQKKKKELEDVVQPIIAKL 557
+D + + K++K LE+ V + L
Sbjct: 993 LIMEDQNN-KLTKERKLLEERVSDLTTNL 1020
Score = 31.7 bits (72), Expect = 0.84
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 459 DDIDRMIKDAEKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTME 518
+++ +K EK + +K+K ++E E + +L A++ E
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEG--ESSDLHEQIAELQAQIAELKAQLAK-----KE 1094
Query: 519 EAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKL 557
E + + L++ KK +ELE + + L
Sbjct: 1095 EELQAALARLEDETSQKN-NALKKIRELESHISDLQEDL 1132
Score = 29.8 bits (67), Expect = 3.5
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 469 EKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWL 528
+ + + + + R LE L L ++++ +T K E I + L
Sbjct: 990 DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK-LKNKHESMISELEVRL 1048
Query: 529 DENQDADAPEFQKKKKELED 548
+ + + E +K K++LE
Sbjct: 1049 KKEEKSRQ-ELEKIKRKLEG 1067
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 33.5 bits (77), Expect = 0.23
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 232 DLFRATM-------KPVQKVLEDADMNKKDVDEIVLVGG-STRIPKVQQLVKEFFNNKEP 283
+++RA + + + + +V E+ GG + + Q+ + N
Sbjct: 413 EIYRALLEATAFGTRAIVDAFHGRGV---EVHELYACGGLPQKNHLLMQIFADVTN--RE 467
Query: 284 SRGVNPDEAVAYGAAVQAGVLSG 306
+ + A GAA+ A V +G
Sbjct: 468 IKVAASKQTPALGAAMFASVAAG 490
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 33.5 bits (77), Expect = 0.23
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 233 LFRATM-------KPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPSR 285
+ AT+ + + + + ++D ++ GG T+ P Q
Sbjct: 417 RYLATIQALALGTRHIIETMNQNGY---NIDTMMASGGGTKNPIFVQEHANATG--CAML 471
Query: 286 GVNPDEAVAYGAAVQAGVLSGE 307
EA+ G+A+ V +G
Sbjct: 472 LPEESEAMLLGSAMMGTVAAGV 493
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 32.3 bits (73), Expect = 0.40
Identities = 18/158 (11%), Positives = 53/158 (33%), Gaps = 20/158 (12%)
Query: 149 ERRNVLVFDLG---------KDLRKDKRTVQKLRRKDLRKDKRTVQKLRREVEKAKRALS 199
V D G +++++ + + + + KR + ++ + A
Sbjct: 182 TEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKKS---EGASI 238
Query: 200 SNFQVKIEIES-FFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEI 258
+ ++ +E + + + + +F + L M + + + + +D I
Sbjct: 239 TPRMIEKGLEYKQCKLNQKTVIDFKDEFYKEQDSLIEEVMSNFEITVGNIN----SIDRI 294
Query: 259 VLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYG 296
++ GG I L + + E + + + G
Sbjct: 295 IVTGGGANIHF-DSLSHYYSDVFEKA--DDSQFSNVRG 329
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 32.2 bits (74), Expect = 0.50
Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 13/90 (14%)
Query: 232 DLFRATM-------KPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPS 284
++ RA + L K I GG + V+QL FN P
Sbjct: 367 EMARAVIEGIIFNLYDAASNLIKNT---KKPVAINATGGFLKSDFVRQLCANIFN--VPI 421
Query: 285 RGVNPDEAVAYGAAVQAGVLSGE-QDTDAI 313
+ ++ A A G QD I
Sbjct: 422 VTMKEQQSGTLAAMFLARQALGLNQDLSEI 451
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A
{Homo sapiens} SCOP: a.7.5.1
Length = 108
Score = 29.4 bits (66), Expect = 1.1
Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 463 RMIKDAEKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAID 522
R++K+ + + K+ +E++E + Y +K Q + + I D ++ +E A
Sbjct: 18 RLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQR-RLEAAYL 76
Query: 523 DKIKWLDENQD-ADAPEFQKKKKELEDV 549
D + L+ +D +A E+++ + L+ V
Sbjct: 77 DLQRILENEKDLEEAEEYKEARLVLDSV 104
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 30.3 bits (69), Expect = 1.7
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 232 DLFRATMKPV----QKVLED-ADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPSRG 286
+L R + VL + A + +D ++ +VGG + + QL + G
Sbjct: 366 ELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACG-IRVIAG 424
Query: 287 VNPDEAVAYGAAVQAGVLSGE 307
P EA G + E
Sbjct: 425 --PVEASTLGNIGIQLMTLDE 443
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 29.7 bits (66), Expect = 2.6
Identities = 24/194 (12%), Positives = 42/194 (21%), Gaps = 47/194 (24%)
Query: 253 KDVDEIVLVGGST-----------------RIPKVQQLVKEFFNNKEPSRGVNPDEAVAY 295
V E++ +G V ++E P +G + A+ Y
Sbjct: 27 PRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRY 86
Query: 296 GAAVQAGVLSGEQDTDAIVLLD--------------VNPLTMGIETVGGVMTKLIPRNTV 341
+ I D G V + +
Sbjct: 87 FLEETQW--------ERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMI 138
Query: 342 IPTKKSQIFSTAADNQNTVTI-QVYEGERPMTKDNHLLGKFDLTGIPPAPR--GVPQIEV 398
F+ + I Q GE M ++ + G+
Sbjct: 139 TWMITRTGFALLWPHTELSWIEQPLGGELLMRRE--VAAMLYEDERVRRRSDWGI-DTLY 195
Query: 399 TFEIDANG--ILQV 410
TF G I +
Sbjct: 196 TFVTVQQGVSIYEC 209
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding
protein, RNA directed DNA methylation; 2.70A
{Arabidopsis thaliana}
Length = 172
Score = 28.8 bits (64), Expect = 3.3
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 158 LGKDLRK--DKRTVQKLRRKDLRKDKRTVQKLRREVEKAKRAL 198
+G++LRK D +T+ +L ++ RK + VQ LR+ VE+ K+ +
Sbjct: 122 IGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDM 164
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome,
PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS,
structural genomics; 2.03A {Escherichia coli} SCOP:
c.23.16.2
Length = 193
Score = 28.7 bits (65), Expect = 3.9
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 237 TMKPVQKVLEDA---DMNKKDVDEIVLVGGST-----RIPKVQQLVKEFFNNKEP 283
K V D ++ + D ++L GG + + ++F N+ +P
Sbjct: 66 GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKP 120
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 29.3 bits (66), Expect = 4.1
Identities = 14/141 (9%), Positives = 35/141 (24%), Gaps = 18/141 (12%)
Query: 430 NRLTPDDIDKGTGNKEKI---------VITNDQNRLTPDDIDRMIK----DAEKFADDDK 476
+ T + ++ + + + T + + + D + +
Sbjct: 360 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE 419
Query: 477 KLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWLDENQDADA 536
E+ + K + T + D I WL + DA
Sbjct: 420 GEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLD-ISWLKDKDSIDA 478
Query: 537 PEFQKKKKELEDVVQPIIAKL 557
E + + + +L
Sbjct: 479 DSL----PEPDVLAAEAMGEL 495
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann
fold, cytosol; 2.05A {Arabidopsis thaliana}
Length = 396
Score = 28.9 bits (65), Expect = 5.1
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 248 ADMNKKDVDEIVLVGGST-----RIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAV--Q 300
+++ D +V+ GG V +LVKEF + +P ++ +G +
Sbjct: 83 DEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIA------SICHGQLILAA 136
Query: 301 AGVLSG 306
A ++G
Sbjct: 137 ADTVNG 142
Score = 28.6 bits (64), Expect = 6.8
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 248 ADMNKKDVDEIVLVGGST-----RIPKVQQLVKEFFNNKEP 283
D+ D +V+ GG V +VKEF N+++P
Sbjct: 276 DDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKP 316
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.9 bits (65), Expect = 5.3
Identities = 11/92 (11%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 463 RMIKDAEKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAID 522
+ +K + + KKL +E + L+ ++ +++K + + +E
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIM------QLQRKIDEQNKEYKSLL-EKMNNLEITYS 959
Query: 523 DKIKWLD------ENQDADAPEFQKKKKELED 548
+ + L + +A + L++
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.4 bits (63), Expect = 7.6
Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 164 KDKRTVQKLRRKDLRKDKRTVQKL------------RREVEKAKRALSSNFQVKIEIESF 211
+ + ++ KD K + L + V ++ +
Sbjct: 21 FKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVN---DTIENLRQA 77
Query: 212 FEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQ 271
+ F E + +E ++ + VL+ V + +I +++
Sbjct: 78 YLRMGFEEYINPVIVDERDIY--KQFGPEAMAVLDRCFYLAGLPRPDVGLSD-EKISQIE 134
Query: 272 QLVKEFFNNKE 282
+L + +KE
Sbjct: 135 KLGIKVSEHKE 145
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 28.2 bits (63), Expect = 7.7
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 30 IGRDWTDATVQSDIKHFSFNVKEKNSKPHIEVNTGTSEGTK-IFAPEEISAM---VLGKM 85
+G A +++ +H V + + + V G K IF KM
Sbjct: 214 LGVSCDKAQLEALTEHCHQLVDQCCNAEALPVGRGRVGLWKDIFTVSMNEKFDLVYKQKM 273
Query: 86 KET 88
+
Sbjct: 274 GKC 276
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed
conformation, bromopyuvate modification, structural
genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP:
c.1.12.7 PDB: 1f61_A 1f8i_A
Length = 429
Score = 28.4 bits (63), Expect = 7.9
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 511 DAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQGAGGAP 565
D + + Q AD + +E+ + PI+A G GGA
Sbjct: 109 DQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGGAL 163
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A
{Thermococcus onnurineus} PDB: 1g2i_A
Length = 168
Score = 27.5 bits (62), Expect = 8.1
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 248 ADMNKKDVDEIVLVGGST-----RIPKVQQLVKEFFNNKEP 283
+++ + D +VL GG K + + F + +P
Sbjct: 57 EEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKP 97
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
superfamily, protease hydrolase, stress response; 2.15A
{Deinococcus radiodurans}
Length = 190
Score = 27.5 bits (62), Expect = 9.2
Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 234 FRATMKPVQKVLEDA---DMNKKDVDEIVLVGGST------RIPKVQQLVKEFFNNKEP 283
+ ++P +K D ++ D D ++L GG+ + V++ ++ +P
Sbjct: 52 MKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKP 110
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 28.0 bits (63), Expect = 9.3
Identities = 25/162 (15%), Positives = 44/162 (27%), Gaps = 44/162 (27%)
Query: 52 EKNSKPHIEVNTGTSEGTKIFAPEEISAMVLG-------KMKETAEAYLGKKVTHAVVTV 104
K E T+ G + + A LG + G V +AV
Sbjct: 101 TKLDDGTFET--RTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAV--- 155
Query: 105 PAYFNDAQRQATKDAGVIARTHRDENINEATGRGPSLMDWTRKKERRNVLVFDLGKDLRK 164
+ K ++ G G S +DWT L K
Sbjct: 156 ----KSVEDFKGKRVVIV-------------GGGDSALDWTV--------------GLIK 184
Query: 165 DKRTVQKL-RRKDLRKDKRTVQKLRREVEKAKRALSSNFQVK 205
+ +V + R + + +T ++ R + +V
Sbjct: 185 NAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVA 226
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein
struct initiative, midwest center for structural
genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 27.5 bits (62), Expect = 9.6
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 240 PVQKVLEDADMNKKDVDEIVLVGGST-----------RIPKVQQLVKEFFNNKEP 283
V V+ + ++ + D +V G + +++K F +
Sbjct: 52 IVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKM 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.362
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,839,042
Number of extensions: 573202
Number of successful extensions: 1780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1699
Number of HSP's successfully gapped: 109
Length of query: 577
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 478
Effective length of database: 3,937,614
Effective search space: 1882179492
Effective search space used: 1882179492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.2 bits)