RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13563
(577 letters)
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 202 bits (516), Expect = 3e-63
Identities = 102/182 (56%), Positives = 131/182 (71%), Gaps = 24/182 (13%)
Query: 308 QDTDAIVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEG 367
++ ++LLDV PL++GIET GGVMT LI RNT IPTK++Q F+T +DNQ V IQVYEG
Sbjct: 2 ENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEG 61
Query: 368 ERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITN 427
ER MTKDN+LLGKF+LTGIPPAPRGVPQIEVTF+IDANGIL VSA
Sbjct: 62 ERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAV-------------- 107
Query: 428 DQNRLTPDDIDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNE 487
DK TG + KI ITND+ RL+ +DI+RM+++AEK+ +D+K +++V ++N
Sbjct: 108 ----------DKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNS 157
Query: 488 LE 489
LE
Sbjct: 158 LE 159
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 173 bits (439), Expect = 2e-52
Identities = 73/116 (62%), Positives = 92/116 (79%)
Query: 313 IVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMT 372
++LLDV PL++GIET+GGVMT LI +NT IPTK SQ+FSTA DNQ+ V+I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 373 KDNHLLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITND 428
DN LG+F+L GI PAPRG+PQIEVTF+IDA+GIL VSA+DK +G ++KI I
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS 116
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 168 bits (426), Expect = 1e-49
Identities = 88/191 (46%), Positives = 117/191 (61%), Gaps = 34/191 (17%)
Query: 149 ERRNVLVFDLG---------------------------KDLRKDKRTVQKLRRK------ 175
RNVL+FDLG D R V +
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHK 62
Query: 176 -DLRKDKRTVQKLRREVEKAKRALSSNFQVKIEIESFFEGDDFSETLTRAKFEELNMDLF 234
D+ ++KR V++LR E+AKR LSS+ Q IEI+S +EG DF ++TRA+FEELN DLF
Sbjct: 63 KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLF 122
Query: 235 RATMKPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVA 294
R T+ PV+K L DA ++K + +IVLVGGSTRIPK+Q+L+++FFN KE ++ +NPDEAVA
Sbjct: 123 RGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVA 182
Query: 295 YGAAVQAGVLS 305
YGAAVQA +LS
Sbjct: 183 YGAAVQAAILS 193
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 162 bits (410), Expect = 3e-47
Identities = 60/140 (42%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 170 QKLRRKDLRKDKRTVQKLRREVEKAKRALSSNFQVKIEIESFFEGD----DFSETLTRAK 225
+K + DLR D +Q+L+ EKAK LSS Q + + + +TRAK
Sbjct: 60 KKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAK 119
Query: 226 FEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPSR 285
E L DL +++ ++ L+DA ++ D+D+++LVGG TR+P VQ+ V EFF KEP +
Sbjct: 120 LESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRK 178
Query: 286 GVNPDEAVAYGAAVQAGVLS 305
VNPDEAVA GAAVQ GVL+
Sbjct: 179 DVNPDEAVAIGAAVQGGVLT 198
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 156 bits (396), Expect = 2e-46
Identities = 50/113 (44%), Positives = 75/113 (66%)
Query: 316 LDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQNTVTIQVYEGERPMTKDN 375
+DV PL++G+ET+GG++ K+IPRNT IP ++Q F+T D Q ++I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 376 HLLGKFDLTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGNKEKIVITND 428
L +F L GIP P G I VTF++DA+G+L V+A +K TG + I +
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS 113
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 140 bits (355), Expect = 1e-39
Identities = 69/134 (51%), Positives = 82/134 (61%), Gaps = 7/134 (5%)
Query: 3 GTRLIGDAAKNQLTTNPENTVYDAKRLIGRDWTDATVQSDIKHFSFN-VKEKNSKPHIEV 61
G L+G AK Q TNP+NT++ KRLIGR + D VQ D+ F + N +EV
Sbjct: 44 GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV 103
Query: 62 NTGTSEGTKIFAPEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGV 121
+ AP +ISA VL KMK+TAE YLG+ VT AV+TVPAYFNDAQRQATKDAG
Sbjct: 104 KG------QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 157
Query: 122 IARTHRDENINEAT 135
IA INE T
Sbjct: 158 IAGLEVKRIINEPT 171
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 139 bits (350), Expect = 7e-39
Identities = 84/133 (63%), Positives = 97/133 (72%), Gaps = 2/133 (1%)
Query: 3 GTRLIGDAAKNQLTTNPENTVYDAKRLIGRDWTDATVQSDIKHFSFNVKEKNSKPHIEVN 62
RLIGDAAKNQ+ NP NTV+DAKRLIGR + DA VQSD+KH+ F V +P ++V
Sbjct: 44 TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVE 103
Query: 63 TGTSEGTKIFAPEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVI 122
TK F PEE+S+MVL KMKE AEAYLGK VT+AVVTVPAYFND+QRQATKDAG I
Sbjct: 104 YKG--ETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTI 161
Query: 123 ARTHRDENINEAT 135
A + INE T
Sbjct: 162 AGLNVLRIINEPT 174
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 107 bits (268), Expect = 9e-29
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 484 ARNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKK 543
+ LESYA+++K ++D +KL KI D +K + + ++ I WLD+NQ A+ EF+ ++
Sbjct: 2 GSHMLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQ 60
Query: 544 KELEDVVQPIIAKLYQGAGGAPP 566
KELE V PII KLYQ AGG P
Sbjct: 61 KELEKVCNPIITKLYQSAGGMPG 83
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 81.3 bits (201), Expect = 2e-19
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 456 LTPDDIDRMIKDAEKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKT 515
L D+I +M++DAE A+ D+K +E V+ RN+ + +S + Q+++ G K+ +KT
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE---AGDKLPADDKT 57
Query: 516 TMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPI 553
+E A+ L D + K +EL V Q +
Sbjct: 58 AIESALTALETALKGE---DKAAIEAKMQELAQVSQKL 92
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 75.3 bits (185), Expect = 3e-17
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 456 LTPDDIDRMIKDAEKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLGAKITDAEKT 515
LT +I MIKD+ +A+ D K + E + E SL L A ++ AE+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAA---DAALLSAAERQ 57
Query: 516 TMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQGA 561
+++A + + D ++ K ++ Q A+ +
Sbjct: 58 VIDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 100
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 77.6 bits (190), Expect = 5e-17
Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 28/181 (15%)
Query: 148 KERRNVLVFDLG------------------------KDLRKDKRTVQKLRRKDLRKDKRT 183
+E +V D+G ++ + + + ++
Sbjct: 4 EEPSGNMVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTA 63
Query: 184 VQKLRREVEKAKRALSSNFQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQK 243
+ + + + G TL + E + A ++ V+
Sbjct: 64 ERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRT 123
Query: 244 VLEDADMNKK---DVDEIVLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVAYGAAVQ 300
LE I L GG + + + L+++ R P AVA GA +
Sbjct: 124 TLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTAVAKGAGMV 182
Query: 301 A 301
Sbjct: 183 L 183
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 67.6 bits (164), Expect = 6e-14
Identities = 18/163 (11%), Positives = 48/163 (29%), Gaps = 11/163 (6%)
Query: 147 KKERRNVLVFDLGK-----DLRKDKRTVQKLRRKDLRKDKRTVQKLRREVEKAKRALSSN 201
E ++L+ DLG K + D V ++ R S+
Sbjct: 3 LDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSS 62
Query: 202 FQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVLV 261
+ I + + + + + + ++ +++ + + ++++
Sbjct: 63 YLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVI 122
Query: 262 GGSTRIPKVQQLVKEFFNNKEPSRGV---NPDEAVAYGAAVQA 301
GG + + VK+ R N + G +
Sbjct: 123 GGGAEL--ICDAVKKHT-QIRDERFFKTNNSQYDLVNGMYLIG 162
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 52.8 bits (126), Expect = 4e-09
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 74 PEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIARTHRDENINE 133
++ ++L A+ + V+ VP D +R+A DAG+ A + I E
Sbjct: 69 DYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEE 128
Query: 134 AT 135
Sbjct: 129 PM 130
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 47.8 bits (113), Expect = 4e-07
Identities = 18/162 (11%), Positives = 47/162 (29%), Gaps = 22/162 (13%)
Query: 147 KKERRNVLVFDLG-----------KDLRKDKRTVQKLRRKDLRKDKRTVQKLRREVEKAK 195
+++ +V D+G D+ L+ +K+ +E
Sbjct: 2 EQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVV 61
Query: 196 RALSSNFQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDV 255
+ + + + E ++ E+L + ++ + V
Sbjct: 62 PFDLAQEALSHPVMFRQKQVGGPE-VSGPILEDLANRIIENIRLNLRGEV-------DRV 113
Query: 256 DEIVLVGGSTRIPKVQQLVKEFFNNKE-PSRGVNPDEAVAYG 296
++ VGG + + + +E + + A A G
Sbjct: 114 TSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 153
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 33.3 bits (75), Expect = 0.067
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 216 DFSET--LTRAKFEELNMDLFRATMKPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQL 273
F+E+ +++ +D+ + V + V ++V+ GG + V+
Sbjct: 167 VFAESEVISQLSKGTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGA 226
Query: 274 VKEFFNNKEPSRGVNPDEAVAYGAAVQA 301
++E E A GAA+ A
Sbjct: 227 LEEGL-GVEIKTSPLAQYNGALGAALYA 253
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 29.9 bits (66), Expect = 0.70
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 458 PDDIDRMIKDAEKFADD-------DKKLKERVEA-----RNELESYAYSLKNQLQDKDKL 505
P++I ++ D E F D KK KE+ E+ ++ Y +++ +D
Sbjct: 1 PEEIRNLLADVETFVADTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQDKGDAEDGD 60
Query: 506 GAKITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVV 550
A ++ D+ ++L V+
Sbjct: 61 EYDDPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVI 105
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14,
HRV-14 [TaxId: 12131]}
Length = 460
Score = 30.0 bits (67), Expect = 0.92
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 13/109 (11%)
Query: 476 KKLKERVEA--RNELESYAYSLKNQLQDKDKLGAKITDAEKTTMEEAID--DKIKWLDEN 531
K K V + QL D + T++EA+ D ++ +D
Sbjct: 60 SKYKGNVNTEPTENMLVAVDHYAGQLLSLDI------PTSELTLKEALYGVDGLEPIDIT 113
Query: 532 QDADAPEFQ--KKKKELEDV-VQPIIAKLYQGAGGAPPPPGGDAGKDEL 577
A P KK+++ + Q + P KDEL
Sbjct: 114 TSAGFPYVSLGIKKRDILNKETQDTEKMKFYLDKYGIDLPLVTYIKDEL 162
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 29.5 bits (64), Expect = 1.0
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 447 IVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELESYAYSLKNQLQDKDKLG 506
I I N +N + +++ M+ + + R S Y Q D +
Sbjct: 248 INIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQ--DVEHRK 305
Query: 507 AKITDAE-------KTTMEEAIDDKIKWLDENQD 533
I +A K M+E ID+ + + D
Sbjct: 306 PSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic
disease virus [TaxId: 11976]}
Length = 497
Score = 29.2 bits (65), Expect = 1.5
Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 24/153 (15%)
Query: 433 TPDDIDKGTGNKEKIVITNDQNRLTPDDIDRMIKDAEKFADDDKKLKERVEARNELESYA 492
PD+ + ++ +K+ + + + K K +E A
Sbjct: 36 VPDEYK---TGYRPANLGRSDPDSDKSLMNIAVKNLQVYQQEPKLDKV----DEFIERAA 88
Query: 493 YSLKNQLQDKDKLGAKITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKEL------ 546
+ L+ K + + A + LD + KK +
Sbjct: 89 ADVLGYLRFLTKGERQAN----LNFKAAFNT----LDLSTSCGPF-VPGKKIDHVKDGVM 139
Query: 547 EDVVQPIIAKLYQGA--GGAPPPPGGDAGKDEL 577
+ V+ + K + A G A KDEL
Sbjct: 140 DQVLAKHLYKCWSVANSGKALHHIYACGLKDEL 172
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 28.8 bits (64), Expect = 1.7
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 435 DDIDKGTGNKEKIVITNDQN--RLTPDDIDRMIKDAEKFADDDKKLKE 480
+ + G N E V+ DQ+ L P++I++ + + EK ++++K K+
Sbjct: 196 EVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia
psychrerythraea [TaxId: 28229]}
Length = 62
Score = 25.8 bits (57), Expect = 3.1
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 15/43 (34%)
Query: 73 APEEISAMVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQA 115
+++ M LG VT+ + VP ++R A
Sbjct: 22 VTPDLALMCLGNA-----------VTNIIAQVPE----SKRVA 49
>d1vzya1 d.193.1.1 (A:1-233) Heat shock protein 33, Hsp33 {Bacillus
subtilis [TaxId: 1423]}
Length = 233
Score = 27.2 bits (60), Expect = 5.0
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 235 RATMKPVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNNKEPSRGVNPDEAVA 294
RA + Q + K DV V G V + +E G +
Sbjct: 86 RAYVSNPQVHFDLNAAGKLDVRRAVGTNG-------TLSVVKDLGLREFFTGQVEIVSGE 138
Query: 295 YGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIETVGGVMTKLIPRNT 340
G ++S EQ ++ + + I GG + +L+P
Sbjct: 139 LGDDFTYYLVSSEQVPSSVGVGVLVNPDNTILAAGGFIIQLMPGTD 184
>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH
{Chromobacterium violaceum [TaxId: 536]}
Length = 277
Score = 27.1 bits (60), Expect = 5.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 544 KELEDVVQPIIAKLYQGAGGAPPPPGGDA 572
K+L D P A LY A P GD
Sbjct: 242 KQLFDATAPDFAPLYLQLADAQPWGAGDI 270
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 167
Score = 26.2 bits (58), Expect = 7.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 43 IKHFSFNVKEKNSKPHIEVNT 63
+++FS V E+++KP +EV +
Sbjct: 21 LENFSSQVVERHNKPEVEVRS 41
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase)
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 25.4 bits (56), Expect = 9.0
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 533 DADAPEFQKKKKELEDVVQPIIAKLYQGA 561
D D +F+ +K+++ ++ + + L+
Sbjct: 74 DFDRKQFEARKRKMMEIAKKVGKGLHPDC 102
>d1n00a_ a.65.1.1 (A:) Annexin GH1 {Cotton (Gossypium hirsutum)
[TaxId: 3635]}
Length = 318
Score = 26.5 bits (58), Expect = 9.2
Identities = 27/120 (22%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 99 HAVVTVPAYF----NDAQ--RQATKDAGVIARTHRDEN--INEATGRGPSLMDWTRKKER 150
HA +TVP D + R+A G +E I+ R + RK
Sbjct: 3 HATLTVPTTVPSVSEDCEQLRKAFSGWGT------NEGLIIDILGHRNAEQRNLIRKTYA 56
Query: 151 RNVLVFDLGKDLRKD--KRTVQKLRRKDLRKDKRTVQKLRREVEKAKRALSSNFQVKIEI 208
G+DL K K R L ++ +A + +S+ QV +EI
Sbjct: 57 ETY-----GEDLLKALDKELSNDFERLVLLWALDPAERDALLANEATKRWTSSNQVLMEI 111
>d2retb1 d.24.1.5 (B:32-197) Type II secretory pathway component
EpsJ {Vibrio vulnificus [TaxId: 672]}
Length = 166
Score = 26.2 bits (57), Expect = 9.3
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 173 RRKDLRKDKRTVQKLRREVEKA-KRALSSNF-----QVKIEIESFFEGDDFSETLTRAKF 226
R L + +R + + + + R +N ++ + + D+ R +
Sbjct: 6 RTARLNELQRALVMMDSDFRQIALRQTRTNGEEPSKKLLHWADYLLDSDNKGIMFARLGW 65
Query: 227 EELNMDLFRATMKPVQKVLED 247
R + V ++D
Sbjct: 66 HNPQQQFPRGEVTKVGYRIKD 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.362
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,091,844
Number of extensions: 102469
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 41
Length of query: 577
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 487
Effective length of database: 1,171,896
Effective search space: 570713352
Effective search space used: 570713352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.0 bits)