BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13564
(323 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|47214221|emb|CAG00803.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 166/320 (51%), Gaps = 57/320 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +LL+VF+ ILPTH HV +L+FY CS RL++
Sbjct: 307 LYRDLLSVFDKLILPTHASCHVQYLLFYLCSFRLALA----------------------- 343
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E+F++ LWK + N + RQ+ Y+ S L A F+PV
Sbjct: 344 --------------------ESFLDHLWKILQNPSQPAVLRQAAVGYLGSFLARAKFIPV 383
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDS- 179
++ CL+ + W H Y+D+ + + ++AC V H FYS CQALF V+ ++H ++D
Sbjct: 384 LTVRACLDLLISWIHGYIDSQNSSGKQACCDVSLHGPFYSTCQALFYVLIFRHRAMLDGH 443
Query: 180 -KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
KK +++LQS NL R+VM QLNPL+ C + + FA+IT YQIV+CYNVI +N R ++L
Sbjct: 444 MKKGLEYLQSFNLERVVMCQLNPLKLCLPAVTTMFAAITRKYQIVFCYNVIERNKR-HML 502
Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQN 298
P+V + G+ + T N LD + PF +LL R +I +P+ +
Sbjct: 503 PVVRSSTGGDCVTAKT-NPLDSFFPFDPYLLKRSGQVI--------EPLYQVWEESADAE 553
Query: 299 LLIADPVSSKQADHDEDDFL 318
L ++ V + + D+DDFL
Sbjct: 554 LFLSKTV-QQGSKEDDDDFL 572
>gi|410901877|ref|XP_003964421.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Takifugu rubripes]
Length = 611
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/321 (34%), Positives = 164/321 (51%), Gaps = 59/321 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +LL+VF+ ILPTH HV +++FY CS RL++ E
Sbjct: 307 LYRDLLSVFDKLILPTHASCHVQYILFYLCSFRLALTEA--------------------- 345
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F++ LWK + N I RQ+ Y+ S L A F+PV
Sbjct: 346 ----------------------FLDHLWKILQNPSQPAILRQAAAGYLGSFLARAKFIPV 383
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDS- 179
++ CL+ + W H Y+D+ + + ++AC + H FYS CQA+F V+ ++H L++
Sbjct: 384 LTVRACLDLLISWIHGYIDSQNSSGKQACCDINLHGPFYSTCQAVFYVLIFRHRALLEGH 443
Query: 180 -KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
KK +++LQSLNL R+VM QLNPL+ C + S FA+IT YQIV+CYNVI +N R +L
Sbjct: 444 MKKGLEYLQSLNLERVVMCQLNPLKLCLPTVTSMFAAITRKYQIVFCYNVIERNNR-QLL 502
Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQN 298
P+V + G+ + T N LD + PF +LL R I P + ++
Sbjct: 503 PVVRSSTGGDCVTTKT-NPLDSFFPFDPYLLKRSGQAIEPLYQVWEE----------FED 551
Query: 299 LLIADPVSSKQA-DHDEDDFL 318
+ P +SKQ D+DDFL
Sbjct: 552 TELLSPRTSKQGPREDDDDFL 572
>gi|301616570|ref|XP_002937728.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Xenopus (Silurana) tropicalis]
Length = 613
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 161/320 (50%), Gaps = 57/320 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
++ +LLAVF+ ILPTH HV + +FY CS RL I
Sbjct: 307 MYRDLLAVFDKLILPTHASCHVQYFMFYICSFRLGIA----------------------- 343
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F+E LWKK+ N + RQ+ +Y+ S L A F+P+
Sbjct: 344 --------------------EAFVEHLWKKLQNPNNPPVIRQAAANYIGSFLARAKFIPL 383
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN D C H FY+ CQA+F ++H+ ++
Sbjct: 384 VTVKACLDLLVNWLHGYIDNQDAGSRAYCDVTVHGPFYAACQAVFYSFIFRHNQFLEGNM 443
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+K + +LQ+LNL R+VM QLNPL+ C +V+ FA+IT YQ+V+CY +I +N R ++P
Sbjct: 444 RKGLAYLQNLNLERIVMCQLNPLKICLPSVVNFFAAITRKYQLVFCYTIIERNNR-QMIP 502
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
I+ + G+ +++ + N LD + PF +L RCK ++ DP + T++L
Sbjct: 503 IIRSSTGGDSVQV-SFNPLDSFFPFDPCILKRCKKLM--------DPFYQVWEESNTEDL 553
Query: 300 LIADP-VSSKQADHDEDDFL 318
+ S AD DEDDFL
Sbjct: 554 KGGQKHIKSSTAD-DEDDFL 572
>gi|351712249|gb|EHB15168.1| RNA polymerase I-specific transcription initiation factor RRN3
[Heterocephalus glaber]
Length = 704
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 160/322 (49%), Gaps = 56/322 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+A+F+ +LPTH HV F +FY CS +L E
Sbjct: 389 LYRDLIAIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 427
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 428 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFVPL 465
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+D
Sbjct: 466 ITVKSCLDLLVDWLHLYLNNQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHKQLLDGNL 525
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 526 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 584
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ G+ ++ T N LD + PF +L R K I DPI T + L
Sbjct: 585 VIRNTGGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFI--------DPIYQTWEDMSAEEL 635
Query: 300 L-IADPVSSKQADHDEDDFLMS 320
+ P+ + + ++DDFL
Sbjct: 636 QELKKPIKKEMVEDEDDDFLKG 657
>gi|156547081|ref|XP_001602153.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Nasonia vitripennis]
Length = 601
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 172/319 (53%), Gaps = 62/319 (19%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+++N+LL FE IL TH HV F++FY CS +L++
Sbjct: 315 IIYNDLLYTFERIILTTHASHHVQFIMFYLCSFKLTVA---------------------- 352
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
E FI +LW+K++N + I RQS Y++SLL A ++
Sbjct: 353 ---------------------ETFIRWLWQKVSNPNVAPIIRQSAVSYIASLLARATYIT 391
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDS 179
V ++++ L EMS W HSY+ + D + E A S V+ H VFYSVCQA+F ++ ++H ++D
Sbjct: 392 VGLLQSVLLEMSTWIHSYISSQD-SLECANSDVRVHTVFYSVCQAMFYLLAFRHKDIIDG 450
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
KK++ FLQ LNLT++V +LNPL+ C +V +FA++T YQ+ YCY VI +N+R N LP
Sbjct: 451 KKHLLFLQGLNLTKIVTCRLNPLKVCQPAVVQNFAAVTRNYQLAYCYTVIERNSRSN-LP 509
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ T +N LD + PF +LLV ITP + +P TT++ ++
Sbjct: 510 VLQTTN-------RFINWLDTFFPFDPYLLVLSGQRITPLYNNSQCTMPNTTDSYVSR-- 560
Query: 300 LIADPVSSKQADHDEDDFL 318
S +++ DEDDF+
Sbjct: 561 -------SSKSECDEDDFM 572
>gi|334333090|ref|XP_001375091.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Monodelphis domestica]
Length = 651
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 155/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +LL +F+ +LPTH H+ F +FY CS +L E F
Sbjct: 343 LYRDLLGIFDKLVLPTHASCHIQFFMFYLCSFKLGFTEAF-------------------- 382
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+E LWKK+ N I RQ+ +Y+ SLL A F+P+
Sbjct: 383 -----------------------LEHLWKKLQNPNNPAILRQAAGNYIGSLLARAKFIPI 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H YLDN D + C H FYS CQA+F ++H L+D
Sbjct: 420 ITVKACLDLLVNWLHIYLDNQDTGTKAFCDVALHGPFYSACQAVFYTFIFRHKQLLDGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
++ + +LQSLN R+VMSQLNPL+ C +V+ FA+IT YQ+V+CY +I +N R +LP
Sbjct: 480 REGLAYLQSLNFERIVMSQLNPLKICLPSVVNLFAAITRKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G ++ T N LD + PF +L R K I+ P D + Q
Sbjct: 539 VLRNTAGGGSVQTCT-NPLDTFFPFDPCVLKRSKKIVDPIYQSWED-----LSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFLMS 320
PV+ + ++DDFL
Sbjct: 593 --KKPVAKGTIEDEDDDFLKG 611
>gi|348584950|ref|XP_003478235.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Cavia porcellus]
Length = 658
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 158/321 (49%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+A+F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLIAIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFVPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+ S
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHKQLLGSNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ + +LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLSYLQSLNFQRIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D N + L
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQTWED-------MNDEELL 590
Query: 300 LIADPVSSKQADHDEDDFLMS 320
PV + + ++DDFL
Sbjct: 591 EFKKPVKKEIIEDEDDDFLKG 611
>gi|348543943|ref|XP_003459441.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Oreochromis niloticus]
Length = 610
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 161/326 (49%), Gaps = 65/326 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +LL VF+ ILPTH HV + +FY CS
Sbjct: 306 LYRDLLTVFDKLILPTHASCHVQYTLFYLCS----------------------------- 336
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F P ++ E F++ LWK + N + + RQ+ Y+ S L A F+P+
Sbjct: 337 -------------FKP-ALAEAFLDHLWKILQNPSLPAVLRQAAAGYLGSFLARAKFIPL 382
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDS- 179
+ CL+ + W H Y+D+ D ++ C V H FY+ CQA+F I ++H ++++
Sbjct: 383 STVWACLDLLISWIHQYIDSQDSCGKQVCCDVSLHGPFYTSCQAVFYTIIFRHRAMLEAN 442
Query: 180 -KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
KK +++LQSLNL R+VM QLNPLR C I + FA+IT YQ+V+CY +I +N R VL
Sbjct: 443 MKKGLEYLQSLNLERVVMCQLNPLRVCLPSITNMFAAITRKYQVVFCYTIIERNNRC-VL 501
Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQN 298
P+V + A G+ + NT N LD + PF +LL R +I P D
Sbjct: 502 PVVRSSAGGDCVTTNT-NPLDSFFPFDPYLLKRSGQLIEPLYQVWDD------------- 547
Query: 299 LLIADPVSSKQADH----DEDDFLMS 320
LL +P +K+ DEDDFL
Sbjct: 548 LLDTEPFPTKRGQQGSREDEDDFLFG 573
>gi|327286917|ref|XP_003228176.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase I-specific
transcription initiation factor RRN3-like [Anolis
carolinensis]
Length = 618
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 146/279 (52%), Gaps = 47/279 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+AVF+ ILPTHG HV +++FY S +L I
Sbjct: 315 LYRDLVAVFDKLILPTHGSCHVQYIMFYLSSFKLGIA----------------------- 351
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F+E LWKK+ + + RQ+ +Y+ S L A F+PV
Sbjct: 352 --------------------EAFVEHLWKKLQDPNTPTVIRQAAANYIGSFLARAKFIPV 391
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN + C H FY+ CQA+F V+ ++H ++D
Sbjct: 392 VTVKACLDLLVNWLHLYIDNQGSGSKAFCDVALHGSFYAACQAVFYVVIFRHKQILDGSL 451
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
KK + FLQ+LN R+VMSQLNPL+ C IV+ FA++T YQI +C +I +N R VLP
Sbjct: 452 KKGLLFLQNLNFERIVMSQLNPLKICLPSIVNFFAALTRKYQIAFCDTIIERNRR-QVLP 510
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
++ + G+ ++ T N LD + PF ++L R K+II P
Sbjct: 511 VIRSSCGGDAVETAT-NPLDSFFPFDPYVLNRSKNIINP 548
>gi|224070078|ref|XP_002195883.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Taeniopygia guttata]
Length = 616
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 159/321 (49%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L++VF+ ILPTH HV + +FY CS +L E
Sbjct: 309 LYRDLVSVFDKLILPTHASCHVQYFMFYICSFKLGFAEA--------------------- 347
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F++ LWKK+ + ++ RQ+ Y+ S L A F+P+
Sbjct: 348 ----------------------FLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPI 385
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN D C H FYS CQA+F + ++H L+D
Sbjct: 386 VTVKACLDLLVNWLHKYIDNQDKGANAYCDVALHGPFYSTCQAVFYTLIFRHKQLLDGNL 445
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+K + +LQSLN R+VM QLNPL+ C +V+ FA+IT YQ+V+CY +I +N RL ++P
Sbjct: 446 RKGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNRL-LIP 504
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
+V + G++++ T N LD + PF ++L R K I P + + +NL
Sbjct: 505 VVRSGTGGDLVQTCT-NPLDSFFPFDPYILKRSKKTIDPMYQFWEE-----LSAEDLENL 558
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ ++ ++DDFL
Sbjct: 559 --KKPIEKGTSEDEDDDFLKG 577
>gi|49119515|gb|AAH73661.1| LOC443681 protein, partial [Xenopus laevis]
Length = 636
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 157/321 (48%), Gaps = 55/321 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +LLAVF+ ILPTH +HV + +FY CS +L I
Sbjct: 331 LYRDLLAVFDKLILPTHASSHVQYCMFYICSFKLGIA----------------------- 367
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F+E LWKK+ N + RQ+ +Y+ S L A F+P+
Sbjct: 368 --------------------EAFLEHLWKKLQNPNNPPVIRQAAANYIGSFLARAKFIPL 407
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN D C H FY+ QA+F ++H ++
Sbjct: 408 VTVKACLDLLVNWLHGYIDNQDAGSRAYCDVTVHGPFYAASQAVFYSFIFRHKQFLEGNL 467
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+K + +LQ+LNL R+VM QLNPL+ C +V+ FA+IT YQ+V+CY +I +N R ++P
Sbjct: 468 RKGLTYLQNLNLERIVMCQLNPLKICLPSVVNFFAAITRKYQLVFCYTIIERNNR-QMIP 526
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
IV + G+ +++ + N LD + PF +L RCK ++ DP + +++L
Sbjct: 527 IVRSSTGGDSVQV-SFNPLDSFFPFDPCILKRCKKLM--------DPFYQIWEESNSEDL 577
Query: 300 LIADPVSSKQADHDEDDFLMS 320
+ DEDDFL
Sbjct: 578 KGGEKCVKGSTADDEDDFLKG 598
>gi|344306517|ref|XP_003421933.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Loxodonta africana]
Length = 658
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFVPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YLDN D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHVYLDNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FASIT+ YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFASITSKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R I P D T+ Q
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSNKFIDPIYQIWED-----TSAEELQE- 591
Query: 300 LIADPVSSKQADHDEDDFLMS 320
+ P+ + + ++DDFL
Sbjct: 592 -VKKPIKKEIVEDEDDDFLKG 611
>gi|149592042|ref|XP_001518561.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3, partial [Ornithorhynchus anatinus]
Length = 660
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+A+F+ +LPTH H + +FY CS +L E
Sbjct: 352 LYRDLIAIFDKLVLPTHASCHTQYFMFYICSFKLGFAEA--------------------- 390
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ N + RQ+ Y+ SLL A F+P+
Sbjct: 391 ----------------------FLEHLWKKLQNPNNPAVLRQAAGSYIGSLLARAKFIPI 428
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H+YLD+ D+ + C H FYS CQA+F + ++H L+D
Sbjct: 429 ITVKACLDLLVNWLHNYLDDQDVGTKAFCDVTLHGPFYSACQAIFYTLVFRHKQLLDGSL 488
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+K + +LQSLN RLVM QLNPL+ C +V+ FA+IT YQ+V+CY +I +N R +LP
Sbjct: 489 RKGLAYLQSLNFERLVMCQLNPLKICLPTVVNLFAAITRKYQLVFCYTIIERNNR-QMLP 547
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + G+ ++ T N LD + PF +L R K II P + + Q
Sbjct: 548 VIRSSVGGDSVQTCT-NPLDSFFPFDPCVLKRSKKIIDPFYQIWEE-----LSAEDLQEF 601
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 602 --KKPIEKGAVEDEDDDFLKG 620
>gi|291390702|ref|XP_002711789.1| PREDICTED: RRN3 RNA polymerase I transcription factor homolog
[Oryctolagus cuniculus]
Length = 658
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHVYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D +T Q
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPVYQIWED-----MSTEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + ++DDFL
Sbjct: 593 --KKPIKKEVVEDEDDDFLKG 611
>gi|426254335|ref|XP_004020834.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Ovis aries]
Length = 651
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHVYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTLIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPLYQIWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + +EDDFL
Sbjct: 593 --KKPIKKEVVEDEEDDFLKG 611
>gi|329112520|ref|NP_001179361.2| RNA polymerase I-specific transcription initiation factor RRN3 [Bos
taurus]
gi|296473372|tpg|DAA15487.1| TPA: RRN3 RNA polymerase I transcription factor homolog [Bos
taurus]
Length = 651
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHVYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTLIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPLYQIWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + +EDDFL
Sbjct: 593 --KKPIKKEVVEDEEDDFLKG 611
>gi|440896809|gb|ELR48636.1| RNA polymerase I-specific transcription initiation factor RRN3 [Bos
grunniens mutus]
Length = 651
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHVYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTLIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPLYQIWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + +EDDFL
Sbjct: 593 --KKPIKKEVVEDEEDDFLKG 611
>gi|167555129|ref|NP_001107876.1| RRN3 RNA polymerase I transcription factor homolog [Xenopus laevis]
gi|84105561|gb|AAI11507.1| LOC443681 protein [Xenopus laevis]
Length = 612
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 156/321 (48%), Gaps = 55/321 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +LLAVF+ ILPTH HV + +FY CS +L I
Sbjct: 307 LYRDLLAVFDKLILPTHASCHVQYCMFYICSFKLGIA----------------------- 343
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F+E LWKK+ N + RQ+ +Y+ S L A F+P+
Sbjct: 344 --------------------EAFLEHLWKKLQNPNNPPVIRQAAANYIGSFLARAKFIPL 383
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN D C H FY+ QA+F ++H ++
Sbjct: 384 VTVKACLDLLVNWLHGYIDNQDAGSRAYCDVTVHGPFYAASQAVFYSFIFRHKQFLEGNL 443
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+K + +LQ+LNL R+VM QLNPL+ C +V+ FA+IT YQ+V+CY +I +N R ++P
Sbjct: 444 RKGLTYLQNLNLERIVMCQLNPLKICLPSVVNFFAAITRKYQLVFCYTIIERNNR-QMIP 502
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
IV + G+ +++ + N LD + PF +L RCK ++ DP + +++L
Sbjct: 503 IVRSSTGGDSVQV-SFNPLDSFFPFDPCILKRCKKLM--------DPFYQIWEESNSEDL 553
Query: 300 LIADPVSSKQADHDEDDFLMS 320
+ DEDDFL
Sbjct: 554 KGGEKCVKGSTADDEDDFLKG 574
>gi|209529668|ref|NP_001129318.1| RNA polymerase I-specific transcription initiation factor RRN3
[Rattus norvegicus]
gi|183986382|gb|AAI66485.1| Rrn3 protein [Rattus norvegicus]
Length = 661
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 163/321 (50%), Gaps = 49/321 (15%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+++F+ +LPTH HV F +F+ CS +LS
Sbjct: 341 LYRDLISIFDKLVLPTHASCHVQFFMFFLCSFKLS------------------------- 375
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LL+ E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 376 -------LLLQG------FAEAFLEHLWKKLQDPNNPVIIRQAAANYIGSFLARAKFIPL 422
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL++ D + C H FYS CQA+F + ++H L+
Sbjct: 423 ITVKSCLDLLVNWLHLYLNSQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNL 482
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+V+SQLNPL+ C +V+ FA+ITN YQ+V+CY ++ +N R +LP
Sbjct: 483 KEGLRYLQSLNFERIVLSQLNPLKICLPRVVNFFAAITNKYQLVFCYTIMERNNR-QMLP 541
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q L
Sbjct: 542 VIRSTAGGDSVQTCT-NPLDTFFPFDPCMLKRSKKFIDPVYQAWED-----MSDEELQEL 595
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P + + ++DDFL
Sbjct: 596 --RKPTRKELVEDEDDDFLKG 614
>gi|87299630|ref|NP_001034610.1| RNA polymerase I-specific transcription initiation factor RRN3 [Mus
musculus]
gi|259494579|sp|B2RS91.1|RRN3_MOUSE RecName: Full=RNA polymerase I-specific transcription initiation
factor RRN3
gi|187951189|gb|AAI38777.1| RRN3 RNA polymerase I transcription factor homolog (yeast) [Mus
musculus]
gi|187952327|gb|AAI38775.1| RRN3 RNA polymerase I transcription factor homolog (yeast) [Mus
musculus]
Length = 656
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 158/317 (49%), Gaps = 55/317 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+++F+ +LPTH HV F +F+ CS +L E
Sbjct: 341 LYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGFAEA--------------------- 379
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 380 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 417
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+KTCL+ + W H YL N D + C H FYS CQA+F + ++H L+
Sbjct: 418 ITVKTCLDLLVNWLHMYLTNQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNL 477
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+V+SQLNPL+ C ++V+ FA+ITN YQ+V+CY ++ +N+R +LP
Sbjct: 478 KQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFFAAITNKYQLVFCYTIMERNSR-QMLP 536
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I DPI + L
Sbjct: 537 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFI--------DPIYQIWEDGSAEEL 587
Query: 300 LIADPVSSKQADHDEDD 316
+ K+ DEDD
Sbjct: 588 QEFKKSTKKEVVEDEDD 604
>gi|395835621|ref|XP_003790775.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Otolemur garnettii]
Length = 650
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 342 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 380
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 381 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 418
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 419 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYAFVFRHKQLLSGNL 478
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 479 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNHR-QMLP 537
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 538 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 591
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + ++DDFL
Sbjct: 592 --KKPIKKEMIEDEDDDFLKG 610
>gi|326928812|ref|XP_003210568.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Meleagris gallopavo]
Length = 616
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L++VF+ ILPTH HV + +F+ CSL+L +
Sbjct: 309 LYRDLVSVFDKLILPTHASCHVQYFIFHICSLKLGL------------------------ 344
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F++ LWKK+ + ++ RQ+ Y+ S L A F+PV
Sbjct: 345 -------------------AEAFLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPV 385
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN D C H FYS CQA F + ++H L+D
Sbjct: 386 VTVKACLDLLVNWMHKYIDNQDTGANAYCDVALHGPFYSACQAAFYTLIFRHKQLLDGNL 445
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+K + +LQSLN R+VM QLNPL+ C +V+ FA+IT YQ+V+CY +I +N R +P
Sbjct: 446 RKGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNR-QFIP 504
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
+V + G+ +++ T N LD + PF ++L R K I P + + +NL
Sbjct: 505 VVRSGTGGDFVQMCT-NPLDSFFPFDPYVLKRSKKTIDPFYQFWEE-----LSAEDLENL 558
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 559 --KKPIKRGTPEDEDDDFLKG 577
>gi|395835623|ref|XP_003790776.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Otolemur garnettii]
Length = 620
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 312 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 350
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 351 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 388
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 389 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYAFVFRHKQLLSGNL 448
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 449 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNHR-QMLP 507
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 508 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 561
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + ++DDFL
Sbjct: 562 --KKPIKKEMIEDEDDDFLKG 580
>gi|21706613|gb|AAH34110.1| Rrn3 protein, partial [Mus musculus]
Length = 513
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 158/317 (49%), Gaps = 55/317 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+++F+ +LPTH HV F +F+ CS +L E
Sbjct: 198 LYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGFAEA--------------------- 236
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 237 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 274
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+KTCL+ + W H YL N D + C H FYS CQA+F + ++H L+
Sbjct: 275 ITVKTCLDLLVNWLHMYLTNQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNL 334
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+V+SQLNPL+ C ++V+ FA+ITN YQ+V+CY ++ +N+R +LP
Sbjct: 335 KQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFFAAITNKYQLVFCYTIMERNSR-QMLP 393
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I DPI + L
Sbjct: 394 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFI--------DPIYQIWEDGSAEEL 444
Query: 300 LIADPVSSKQADHDEDD 316
+ K+ DEDD
Sbjct: 445 QEFKKSTKKEVVEDEDD 461
>gi|73959061|ref|XP_536965.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Canis lupus familiaris]
Length = 651
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D N Q
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPVYQIWED-----MNAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + ++DDFL
Sbjct: 593 --KKPIKKEVVEDEDDDFLKG 611
>gi|221040220|dbj|BAH14891.1| unnamed protein product [Homo sapiens]
Length = 621
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 313 LYRDLMNIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 351
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 352 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 389
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 390 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 449
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 450 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 508
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 509 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 562
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 563 --KKPMKKDIVEDEDDDFLKG 581
>gi|296219591|ref|XP_002755948.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Callithrix jacchus]
Length = 651
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 156/319 (48%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ L+ +F+ +LPTH HV FL+FY CS +L
Sbjct: 343 LYRNLINIFDKLLLPTHASCHVQFLMFYLCSFKLGFA----------------------- 379
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 380 --------------------EAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ M W H YL N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLMVNWLHIYLHNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + + ++DDFL
Sbjct: 593 --KKPIKKEIMEDEDDDFL 609
>gi|332240365|ref|XP_003269358.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Nomascus leucogenys]
Length = 519
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 157/319 (49%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 211 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 249
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 250 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 287
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 288 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 347
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 348 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 406
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 407 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----VSAEELQEF 460
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + + ++DDFL
Sbjct: 461 --KKPMKKEVVEDEDDDFL 477
>gi|296219593|ref|XP_002755949.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Callithrix jacchus]
Length = 621
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 156/319 (48%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ L+ +F+ +LPTH HV FL+FY CS +L
Sbjct: 313 LYRNLINIFDKLLLPTHASCHVQFLMFYLCSFKLGFA----------------------- 349
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 350 --------------------EAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 389
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ M W H YL N D + C H FYS CQA+F ++H L+
Sbjct: 390 ITVKSCLDLMVNWLHIYLHNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 449
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 450 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 508
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 509 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----MSAEELQEF 562
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + + ++DDFL
Sbjct: 563 --KKPIKKEIMEDEDDDFL 579
>gi|194389212|dbj|BAG65594.1| unnamed protein product [Homo sapiens]
Length = 618
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 310 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 348
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 349 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 386
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 387 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 446
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 447 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 505
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 506 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 559
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 560 --KKPMKKDIVEDEDDDFLKG 578
>gi|93102377|ref|NP_060897.3| RNA polymerase I-specific transcription initiation factor RRN3
[Homo sapiens]
gi|74719591|sp|Q9NYV6.1|RRN3_HUMAN RecName: Full=RNA polymerase I-specific transcription initiation
factor RRN3; AltName: Full=Transcription initiation
factor IA; Short=TIF-IA
gi|7670100|gb|AAF66160.1|AF227156_1 RRN3 [Homo sapiens]
gi|119575141|gb|EAW54754.1| hCG1786665, isoform CRA_e [Homo sapiens]
gi|124376144|gb|AAI32689.1| RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
[Homo sapiens]
gi|124376846|gb|AAI32691.1| RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
[Homo sapiens]
gi|189054534|dbj|BAG37307.1| unnamed protein product [Homo sapiens]
gi|261858950|dbj|BAI45997.1| RRN3 RNA polymerase I transcription factor homolog [synthetic
construct]
gi|313883210|gb|ADR83091.1| RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
[synthetic construct]
Length = 651
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 157/319 (49%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 593 --KKPMKKDIVEDEDDDFL 609
>gi|402907734|ref|XP_003916622.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 3 [Papio anubis]
Length = 618
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 157/319 (49%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 310 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 348
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 349 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 386
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 387 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 446
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 447 KEGLRYLQSLNFERIVMSQLNPLKVCLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 505
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 506 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----MSAEELQEF 559
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + + ++DDFL
Sbjct: 560 --KKPMKKEIVEDEDDDFL 576
>gi|444727169|gb|ELW67674.1| RNA polymerase I-specific transcription initiation factor RRN3
[Tupaia chinensis]
Length = 388
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 155/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 72 LYRDLVTIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 110
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 111 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFIPL 148
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 149 ITVKSCLDLLVNWLHMYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 208
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 209 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 267
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 268 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPVYQIWED-----MSAEELQEF 321
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P + + ++DDFL
Sbjct: 322 --RKPTKKEMVEDEDDDFLKG 340
>gi|194381126|dbj|BAG64131.1| unnamed protein product [Homo sapiens]
Length = 552
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 157/319 (49%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 244 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 282
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 283 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 320
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 321 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 380
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 381 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 439
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 440 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 493
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 494 --KKPMKKDIVEDEDDDFL 510
>gi|402907730|ref|XP_003916620.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Papio anubis]
Length = 651
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 157/319 (49%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKVCLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + + ++DDFL
Sbjct: 593 --KKPMKKEIVEDEDDDFL 609
>gi|383872655|ref|NP_001244593.1| RNA polymerase I-specific transcription initiation factor RRN3
[Macaca mulatta]
gi|355709985|gb|EHH31449.1| Transcription initiation factor IA [Macaca mulatta]
gi|380813966|gb|AFE78857.1| RNA polymerase I-specific transcription initiation factor RRN3
[Macaca mulatta]
gi|383412703|gb|AFH29565.1| RNA polymerase I-specific transcription initiation factor RRN3
[Macaca mulatta]
Length = 651
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 157/319 (49%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKVCLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + + ++DDFL
Sbjct: 593 --KKPMKKEIVEDEDDDFL 609
>gi|48734880|gb|AAH71868.1| RRN3 protein [Homo sapiens]
Length = 430
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 122 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 160
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 161 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 198
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 199 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 258
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 259 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 317
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 318 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 371
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 372 --KKPMKKDIVEDEDDDFLKG 390
>gi|194390518|dbj|BAG62018.1| unnamed protein product [Homo sapiens]
Length = 621
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 313 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 351
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 352 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 389
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 390 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 449
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 450 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 508
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 509 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 562
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 563 --KKPMKKDIVEDEDDDFLKG 581
>gi|402907732|ref|XP_003916621.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Papio anubis]
Length = 621
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 313 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 351
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 352 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 389
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 390 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 449
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 450 KEGLRYLQSLNFERIVMSQLNPLKVCLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 508
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 509 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----MSAEELQEF 562
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + ++DDFL
Sbjct: 563 --KKPMKKEIVEDEDDDFLKG 581
>gi|194382578|dbj|BAG64459.1| unnamed protein product [Homo sapiens]
Length = 469
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 161 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 199
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 200 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 237
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 238 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 297
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 298 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 356
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 357 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 410
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 411 --KKPMKKDIVEDEDDDFLKG 429
>gi|194380512|dbj|BAG58409.1| unnamed protein product [Homo sapiens]
Length = 502
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 194 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 232
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 233 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 270
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 271 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 330
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 331 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 389
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 390 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 443
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 444 --KKPMKKDIVEDEDDDFLKG 462
>gi|10046714|emb|CAC07955.1| transcription initiation factor IA protein [Homo sapiens]
Length = 651
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 157/319 (49%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYXFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 593 --KKPMKKDIVEDEDDDFL 609
>gi|119575137|gb|EAW54750.1| hCG1786665, isoform CRA_a [Homo sapiens]
Length = 366
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 58 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 96
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 97 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 134
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 135 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 194
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 195 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 253
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 254 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 307
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 308 --KKPMKKDIVEDEDDDFLKG 326
>gi|363739454|ref|XP_003642174.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Gallus gallus]
Length = 619
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L++VF+ ILPTH HV + +F+ CSL+
Sbjct: 308 LYRDLVSVFDKLILPTHASCHVQYFIFHICSLK--------------------------- 340
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ E F++ LWKK+ + ++ RQ+ Y+ S L A F+PV
Sbjct: 341 ----------------SGLAEAFLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPV 384
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN D C H FYS CQA F + ++H L+D
Sbjct: 385 VTVKACLDLLVNWMHKYIDNQDTGANAYCDVALHGPFYSACQAAFYTLIFRHKQLLDGNL 444
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+K + +LQSLN R+VM QLNPL+ C +V+ FA+IT YQ+V+CY +I +N R +P
Sbjct: 445 RKGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNR-QFIP 503
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
+V + G+ +++ T N LD + PF ++L R K I P + + +NL
Sbjct: 504 VVRSGTGGDFVQMCT-NPLDSFFPFDPYVLKRSKKTIDPFYQFWEE-----LSAEDLENL 557
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ ++ ++DDFL
Sbjct: 558 --KKPIKKGTSEDEDDDFLKG 576
>gi|449277428|gb|EMC85593.1| RNA polymerase I-specific transcription initiation factor RRN3,
partial [Columba livia]
Length = 562
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 158/321 (49%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L++VF+ ILPTH HV + +FY CS +L++ E
Sbjct: 278 LYRDLVSVFDKLILPTHASCHVQYFMFYICSFKLALAEA--------------------- 316
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F++ LWKK+ + ++ RQ+ Y+ S L A F+PV
Sbjct: 317 ----------------------FLDHLWKKLHDPNNPSVIRQTAGSYIGSFLARAKFIPV 354
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN D C H FYS CQ +F + ++H L+D
Sbjct: 355 VTVKACLDLLVNWLHKYIDNQDTGANAYCDVALHGPFYSTCQTVFYTLIFRHKQLLDGNL 414
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+K + +LQSLN R+VM QLNPL+ C +V+ FA+IT YQ+V+CY +I +N R +P
Sbjct: 415 RKGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNR-QFIP 473
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
+V + G++++ T N LD + PF ++L R K I P + + +NL
Sbjct: 474 VVRSGTGGDLVQTCT-NPLDSFFPFDPYILKRSKKTIDPFYQFWEE-----LSAEDLENL 527
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ ++ ++DDFL
Sbjct: 528 --KKPIKRGTSEDEDDDFLKG 546
>gi|292611905|ref|XP_706962.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Danio rerio]
Length = 612
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 156/322 (48%), Gaps = 59/322 (18%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
L+ +L++VF+ +LPTH HV F +FY CS RL + E
Sbjct: 306 ALYRDLVSVFDKVVLPTHASCHVQFYMFYLCSFRLGLAEA-------------------- 345
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
F++ LWK + ++ RQS Y+ S + A F+P
Sbjct: 346 -----------------------FLDHLWKLLQGPNQPSVLRQSAAGYMGSFMARAKFLP 382
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS- 179
V +K CL+ + W H Y+D+ D + C H FY+ CQA+F + +KH+ +++
Sbjct: 383 VSTVKACLDLLVPWLHLYIDSQDSGSKAFCDINLHGPFYTACQAVFYTLIFKHNAILEGN 442
Query: 180 -KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
KK + +LQ LNL R+VM QLNPLR C + + FA+IT YQ+V+CY +I +N R ++L
Sbjct: 443 MKKGLAYLQGLNLERIVMCQLNPLRVCLPAVTNMFAAITRKYQLVFCYTIIERNNR-HLL 501
Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQN 298
P+V + G+ + NT N LD + PF +LL +I P +P +
Sbjct: 502 PVVRSSVGGSSVATNT-NPLDSFFPFDPYLLKSSGKLIEPIYQVWEEP----------SD 550
Query: 299 LLIADPVSS--KQADHDEDDFL 318
+I P K + +EDDFL
Sbjct: 551 CMIGVPKKEIPKGSMEEEDDFL 572
>gi|332845340|ref|XP_001143837.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Pan troglodytes]
Length = 552
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 156/319 (48%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 244 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 282
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 283 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 320
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 321 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 380
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 381 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 439
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 440 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 493
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 494 --KKPMKKDIVEDEDDDFL 510
>gi|395517474|ref|XP_003762901.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Sarcophilus harrisii]
Length = 580
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 139/272 (51%), Gaps = 47/272 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +LL +F+ +LPTH H+ F +FY CS +L E
Sbjct: 354 LYRDLLGIFDKLVLPTHASCHIQFFMFYLCSFKLGFAEA--------------------- 392
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ N I RQ+ +Y+ SLL A F+P+
Sbjct: 393 ----------------------FLEHLWKKLQNPNNPAILRQAAGNYIGSLLARAKFVPI 430
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+KTCL+ + W H YLDN D + C H FYS CQA+F ++H L+D
Sbjct: 431 ITVKTCLDLLVHWLHIYLDNQDAGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLDGNL 490
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+K + +LQSLN R+VMSQLNPL+ C +V+ FA+IT YQ+V+CY +I +N R +LP
Sbjct: 491 RKGLAYLQSLNFERIVMSQLNPLKICLPSVVNLFAAITRKYQLVFCYTIIERNNR-QMLP 549
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVR 271
++ A G ++ T N LD + PF +L R
Sbjct: 550 VLRNTAGGGSVQTCT-NPLDTFFPFDPCVLKR 580
>gi|431910472|gb|ELK13544.1| RNA polymerase I-specific transcription initiation factor RRN3
[Pteropus alecto]
Length = 651
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ SLL A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSLLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKLFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + ++DDFL
Sbjct: 593 --KKPIKKEVVEDEDDDFLKG 611
>gi|410255386|gb|JAA15660.1| RRN3 RNA polymerase I transcription factor homolog [Pan
troglodytes]
gi|410296548|gb|JAA26874.1| RRN3 RNA polymerase I transcription factor homolog [Pan
troglodytes]
gi|410345920|gb|JAA40671.1| RRN3 RNA polymerase I transcription factor homolog [Pan
troglodytes]
Length = 651
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 156/319 (48%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 593 --KKPMKKDIVEDEDDDFL 609
>gi|332845342|ref|XP_003315026.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Pan troglodytes]
Length = 469
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 161 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 199
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 200 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 237
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 238 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 297
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 298 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 356
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 357 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 410
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + ++DDFL
Sbjct: 411 --KKPMKKDIVEDEDDDFLKG 429
>gi|194219208|ref|XP_001488975.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Equus caballus]
Length = 651
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFVPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
+V + A G+ + T N LD + PF +L R K I P D + Q
Sbjct: 539 VVRSTAGGDSVHTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----VSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + ++DDFL
Sbjct: 593 --KKPIKKETVEDEDDDFLKG 611
>gi|417403641|gb|JAA48619.1| Putative rna polymerase i transcription factor [Desmodus rotundus]
Length = 651
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 157/321 (48%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLIIIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ SLL A ++P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSLLARAKYIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHLYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPVYQIWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P+ + + ++DDFL
Sbjct: 593 --KKPIKKEVVEDEDDDFLKG 611
>gi|432108572|gb|ELK33281.1| RNA polymerase I-specific transcription initiation factor RRN3
[Myotis davidii]
Length = 699
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 145/279 (51%), Gaps = 47/279 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ EL+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 341 LYRELIIIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 379
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ SLL A F+P+
Sbjct: 380 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSLLARAKFIPL 417
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 418 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTCVFRHKQLLSGNL 477
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N R +LP
Sbjct: 478 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTIIERNNR-QMLP 536
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
++ + A G+ ++ T N LD + PF +L R K I P
Sbjct: 537 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDP 574
>gi|354481228|ref|XP_003502804.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Cricetulus griseus]
Length = 325
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 158/321 (49%), Gaps = 54/321 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+++F+ +LPTH HV F +F+ CS +L E
Sbjct: 10 LYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGFAEA--------------------- 48
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 49 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 86
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H ++
Sbjct: 87 ITVKSCLDLLVNWLHMYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQILSGNL 146
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+V+SQLNPL+ C +V+ FA++TN YQ+V+CY ++ +N+R +LP
Sbjct: 147 KEGLRYLQSLNFERVVLSQLNPLKICLPSVVNFFAAVTNKYQLVFCYTIMERNSR-QMLP 205
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 206 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----MSAEELQEF 259
Query: 300 LIADPVSSKQADHDEDDFLMS 320
P + + ++DDFL
Sbjct: 260 --KKPTKKEPVEDEDDDFLKG 278
>gi|301765376|ref|XP_002918109.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Ailuropoda melanoleuca]
Length = 651
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 143/279 (51%), Gaps = 47/279 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPAVVNFFAAITSKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
++ A G+ ++ T N LD + PF +L R K + P
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFLDP 576
>gi|91090592|ref|XP_972768.1| PREDICTED: similar to transcription initiation factor RRN3
[Tribolium castaneum]
Length = 594
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 148/277 (53%), Gaps = 46/277 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ ++L VF+ +ILPT+ HV F++F CS +
Sbjct: 314 LYQDILTVFDQSILPTYNTHHVQFVMFVLCSFK--------------------------- 346
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++ E F +LWKK+ N + ++ RQ+ +Y+ S + A F+P+
Sbjct: 347 ----------------TTLTEAFFNYLWKKVCNPNVASVIRQAAVNYIVSFIARATFVPL 390
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++K L +M++W HSY+ D + H VFY+VCQALF VI+++H LV++KK
Sbjct: 391 TMLKGTLQQMAEWIHSYIATQDGLECVNSDLRLHSVFYTVCQALFYVISFRHKDLVNTKK 450
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N+ FL+SLNL ++V S+LNPLR C +V +FA+IT YQ+ YCY++I N+R N LP V
Sbjct: 451 NVVFLESLNLAKIVTSRLNPLRVCQPAVVQNFAAITRKYQLAYCYSIIEHNSR-NTLPTV 509
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
D G + + N L+ PF F+L R + + P
Sbjct: 510 YRDEKGFVTV--SSNVLEACYPFDPFVLSRSSAKVHP 544
>gi|197101783|ref|NP_001126928.1| RNA polymerase I-specific transcription initiation factor RRN3
[Pongo abelii]
gi|75040988|sp|Q5R4N9.1|RRN3_PONAB RecName: Full=RNA polymerase I-specific transcription initiation
factor RRN3
gi|55733187|emb|CAH93277.1| hypothetical protein [Pongo abelii]
Length = 650
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 155/319 (48%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +L TH HV F +FY CS +L E
Sbjct: 342 LYRDLINIFDKLLLSTHASCHVQFFMFYLCSFKLGFAEA--------------------- 380
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 381 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 418
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+++CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 419 ITVRSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 478
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN +VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 479 KEGLRYLQSLNFEWIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 537
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 538 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 591
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + + ++DDFL
Sbjct: 592 --KKPMRKEIVEDEDDDFL 608
>gi|291241045|ref|XP_002740429.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 625
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 141/278 (50%), Gaps = 46/278 (16%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+L+ + L +F ILPTHG H+ +++FY CS F Q
Sbjct: 372 LLWKQFLGIFNKIILPTHGSCHIQYIMFYMCS-------------------------FNQ 406
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
+ I + FI+FLWKKI N I RQS ++SSLL A F+P
Sbjct: 407 N------------------IADAFIDFLWKKIQNPDTAAILRQSSASFISSLLSRAKFIP 448
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
+ +K + + W H Y+D + + H FYSVCQA F + ++H L+++
Sbjct: 449 LSTVKAMFDVLIPWIHKYIDRQEGSSRSYPDVNLHGPFYSVCQAAFYIFVFRHKQLLETN 508
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
K + +++SLN R+V +LNPL+ C +V+ FA+IT +QIVYCY VI +N R +LP+
Sbjct: 509 KGLNYVRSLNFDRIVTCRLNPLKVCLPTVVNMFATITRMHQIVYCYTVIERNNR-TLLPV 567
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
V+ N+ L VN LD Y PF +LL R K I P
Sbjct: 568 VTQSHNTNV--LTNVNPLDSYFPFDPYLLSRSKKYIKP 603
>gi|335310436|ref|XP_003362032.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3, partial [Sus scrofa]
Length = 430
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 138/279 (49%), Gaps = 46/279 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 121 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 159
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 160 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 197
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 198 ITVKSCLDLLVNWLHVYLNNQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHRQLLSGNL 257
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N L +LP
Sbjct: 258 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTLIERN-NLKMLP 316
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ + G N LD + PF +L R K I P
Sbjct: 317 VXIRNTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDP 355
>gi|281340595|gb|EFB16179.1| hypothetical protein PANDA_006503 [Ailuropoda melanoleuca]
Length = 569
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 140/272 (51%), Gaps = 47/272 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKICLPAVVNFFAAITSKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVR 271
++ A G+ ++ T N LD + PF +L R
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKR 569
>gi|332375841|gb|AEE63061.1| unknown [Dendroctonus ponderosae]
Length = 605
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 155/320 (48%), Gaps = 59/320 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L++ LL F+ ILPT+ H F++F C+L+
Sbjct: 320 LYHHLLTAFDKVILPTYNSHHTQFVMFAMCALK--------------------------- 352
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++ E F+ LWKK+ N + + RQ+ Y++SL+ F+ +
Sbjct: 353 ----------------PAVTEAFLSHLWKKVCNPNVAAVLRQTAITYIASLVARGQFVSL 396
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
V+K + +M+ W HSY+ N D + H VFYSVCQALF ++ ++H LV+SKK
Sbjct: 397 VVLKGTMQQMADWIHSYMKNQDGLECVNSDLRVHSVFYSVCQALFYLLAFRHKDLVESKK 456
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N+ FLQSL L ++V ++LNPLR C+ +V FA++ YQ+ YCY VI N+R N +P +
Sbjct: 457 NVVFLQSLQLGKMVTNRLNPLRVCHQAVVQSFAAVARKYQLAYCYTVIDHNSR-NSMPTI 515
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLI 301
D G+ ++ + N L Y PF ++LVR I P + +N
Sbjct: 516 YQDEKGS--RIVSDNLLCDYYPFDPYVLVRSGKRIQPHYRDYEEEALSGSN--------- 564
Query: 302 ADPVSSKQADHDEDDFLMSV 321
S ++D DDFL SV
Sbjct: 565 ----DSDAKENDLDDFLDSV 580
>gi|119575139|gb|EAW54752.1| hCG1786665, isoform CRA_c [Homo sapiens]
Length = 276
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 135/245 (55%), Gaps = 11/245 (4%)
Query: 78 VSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHS 137
+ E F+E LWKK+ + I RQ+ +Y+ S L A F+P+ +K+CL+ + W H
Sbjct: 1 MGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHI 60
Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
YL+N D + C H FYS CQA+F ++H L+ K+ +++LQSLN R+V
Sbjct: 61 YLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIV 120
Query: 196 MSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTV 255
MSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP++ + A G+ +++ T
Sbjct: 121 MSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPVIRSTAGGDSVQICT- 178
Query: 256 NALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDED 315
N LD + PF +L R K I P D + Q P+ + ++D
Sbjct: 179 NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF--KKPMKKDIVEDEDD 231
Query: 316 DFLMS 320
DFL
Sbjct: 232 DFLKG 236
>gi|405969349|gb|EKC34325.1| RNA polymerase I-specific transcription initiation factor RRN3
[Crassostrea gigas]
Length = 558
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 138/277 (49%), Gaps = 49/277 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ E+L VF+ ILPTH HV F++FY CS +
Sbjct: 270 LYREMLLVFDRLILPTHASCHVQFILFYLCSTK--------------------------- 302
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
I E FI++LWKK+ N ++FRQ+ Y+ SLL A F+PV
Sbjct: 303 ----------------TPICEGFIDYLWKKVQNPNTESVFRQAAVGYIGSLLARAMFVPV 346
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ CL+ M QW H YLD+T D H FY VCQA+F V ++ + ++KK
Sbjct: 347 STVTACLDLMCQWVHLYLDSTS-EDVVNADVNHHGPFYCVCQAVFYVFVFRSKEIFETKK 405
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
K+ +SLN R+V S+LNPLR C IV F+SIT +Q+ +C +I +N R +LP+
Sbjct: 406 GHKWAESLNFQRIVTSRLNPLRICLPVIVKTFSSITRMHQLAFCDTIIERNKRC-ILPVT 464
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
S + LG+ + V LD Y PF +LL R I P
Sbjct: 465 S-NGLGSS---SVVTTLDSYFPFDPYLLNRSGRFIIP 497
>gi|340710138|ref|XP_003393653.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase I-specific
transcription initiation factor RRN3-like [Bombus
terrestris]
Length = 566
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 147/277 (53%), Gaps = 51/277 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ ++L +FE+ ILPTH +V +++FY CS +
Sbjct: 314 LYFDILKIFETIILPTHASQYVQYIMFYICSFK--------------------------- 346
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++ E F+++LW+K ++ + +I RQS Y++SLL+ A F+
Sbjct: 347 ----------------TAVAEAFVDWLWRKTSDPNVPSIIRQSSVVYIASLLVAATFVTT 390
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++K ++S+W H Y++ D ++ +H VFYSVC+ALF +IT +H+ DSKK
Sbjct: 391 GLVKVVQFKISKWIHDYINMQDHSNYIEDENKEHSVFYSVCEALFLIITKRHNDYPDSKK 450
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
M +LQ L+L +++ +LNPL++C+ EI FA IT YQ+ YCY VI N R N LP+
Sbjct: 451 YMLYLQELDLAKIITCKLNPLKACHPEIAHSFAEITRIYQLAYCYTVIENNTR-NQLPLF 509
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
T K T + ++ +SPF+++ L R ITP
Sbjct: 510 DT-------KRGTTSTVEIFSPFNSYTLQRSGQRITP 539
>gi|427789119|gb|JAA60011.1| Putative rna polymerase i specific transcription initiation factor
rrn3 [Rhipicephalus pulchellus]
Length = 595
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 133/283 (46%), Gaps = 57/283 (20%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
VLF + L +F+ +LPTH HV FL+FY CS
Sbjct: 305 VLFRDFLTIFDKIVLPTHKCCHVQFLLFYLCS---------------------------- 336
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
F P ++ F+++LWKK+ N I RQ+ Y+ S L A ++P
Sbjct: 337 --------------FRPAALAVAFLDYLWKKVQNPATSCIVRQASAFYIGSFLARAKYVP 382
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV----KHPVFYSVCQALFSVITYKHSIL 176
+ + L+ M QW H Y+ L D C P +H FY+VCQ +F V + H +
Sbjct: 383 LSTVCDSLSLMCQWAHGYV--ASLNDGGFCQPQHDVQRHGTFYAVCQTVFYVFAFHHKGI 440
Query: 177 VDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLN 236
D K +++L+ LNL LVM LNPL++C +V FASI YQ+VYCY+VI +N RL
Sbjct: 441 ADGAKGLQYLRELNLEALVMCPLNPLKACLPAVVKQFASIARHYQLVYCYSVIERNQRL- 499
Query: 237 VLPIVSTDA-LGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
LP D G+ + LD + PF ++L R I P
Sbjct: 500 ALPTTGGDTPYGDAV-------LDAFFPFDPYVLKRTGKWIDP 535
>gi|427789121|gb|JAA60012.1| Putative rna polymerase i specific transcription initiation factor
rrn3 [Rhipicephalus pulchellus]
Length = 595
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 133/283 (46%), Gaps = 57/283 (20%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
VLF + L +F+ +LPTH HV FL+FY CS
Sbjct: 305 VLFRDFLTIFDKIVLPTHKCCHVQFLLFYLCS---------------------------- 336
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
F P ++ F+++LWKK+ N I RQ+ Y+ S L A ++P
Sbjct: 337 --------------FRPAALAVAFLDYLWKKVQNPATSCIVRQASAFYIGSFLARAKYVP 382
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV----KHPVFYSVCQALFSVITYKHSIL 176
+ + L+ M QW H Y+ L D C P +H FY+VCQ +F V + H +
Sbjct: 383 LSTVCDSLSLMCQWAHGYV--ASLNDGGFCQPQHDVQRHGTFYAVCQTVFYVFAFHHKGI 440
Query: 177 VDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLN 236
D K +++L+ LNL LVM LNPL++C +V FASI YQ+VYCY+VI +N RL
Sbjct: 441 ADGAKGLQYLRELNLEALVMCPLNPLKACLPAVVKQFASIARHYQLVYCYSVIERNQRL- 499
Query: 237 VLPIVSTDA-LGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
LP D G+ + LD + PF ++L R I P
Sbjct: 500 ALPTTGGDTPYGDAV-------LDAFFPFDPYVLKRTGKWIDP 535
>gi|297698532|ref|XP_002826374.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 275
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 134/244 (54%), Gaps = 11/244 (4%)
Query: 79 SIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSY 138
E F+E LWKK+ + I RQ+ +Y+ S L A F+P+ +++CL+ + W H Y
Sbjct: 1 GFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVRSCLDLLVNWLHIY 60
Query: 139 LDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLVM 196
L+N D + C H FYS CQA+F ++H L+ K+ +++LQSLN R+VM
Sbjct: 61 LNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLRYLQSLNFERIVM 120
Query: 197 SQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVN 256
SQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP++ + A G+ ++ T N
Sbjct: 121 SQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPVIRSTAGGDSVQTCT-N 178
Query: 257 ALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDD 316
LD + PF +L R K I P D + Q P+ + + ++DD
Sbjct: 179 PLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF--KKPMRKEIVEDEDDD 231
Query: 317 FLMS 320
FL
Sbjct: 232 FLKG 235
>gi|346468377|gb|AEO34033.1| hypothetical protein [Amblyomma maculatum]
Length = 589
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 135/286 (47%), Gaps = 60/286 (20%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
VLF + L +F+ ILPTH H+ FL+FY CS
Sbjct: 301 VLFKDFLTIFDKIILPTHKCCHLQFLLFYLCS---------------------------- 332
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
F P ++ F+++LWKK+ N ++ RQ+ YV S L A ++P
Sbjct: 333 --------------FRPAALAVAFLDYLWKKVQNPATSSVIRQASAFYVGSFLARAKYVP 378
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV----KHPVFYSVCQALFSVITYKHSIL 176
+ + L+ M W H+Y+ L D C P +H FY+VCQ +F V + H +
Sbjct: 379 LSTVCASLSLMCDWAHNYM--ASLNDGGFCQPQHDVQRHGTFYAVCQTVFYVFAFHHKGI 436
Query: 177 VDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLN 236
K +++L+ LNL LVM LNPL+SC +V FASI YQ+VYCY+VI +N RL
Sbjct: 437 ASGDKGLQYLRDLNLEGLVMCPLNPLKSCLPAVVKQFASIARHYQLVYCYSVIERNQRL- 495
Query: 237 VLPIVSTDA----LGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
LP S D G+I+ LD + PF +LL R I P
Sbjct: 496 ALPTASCDDDGVHGGDIV-------LDAFFPFDPYLLKRTGKWIEP 534
>gi|149042546|gb|EDL96183.1| rCG49762 [Rattus norvegicus]
Length = 291
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 136/245 (55%), Gaps = 11/245 (4%)
Query: 78 VSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHS 137
+ E F+E LWKK+ + I RQ+ +Y+ S L A F+P+ +K+CL+ + W H
Sbjct: 9 LGFAEAFLEHLWKKLQDPNNPVIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHL 68
Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
YL++ D + C H FYS CQA+F + ++H L+ K+ +++LQSLN R+V
Sbjct: 69 YLNSQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNLKEGLRYLQSLNFERIV 128
Query: 196 MSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTV 255
+SQLNPL+ C +V+ FA+ITN YQ+V+CY ++ +N R +LP++ + A G+ ++ T
Sbjct: 129 LSQLNPLKICLPRVVNFFAAITNKYQLVFCYTIMERNNR-QMLPVIRSTAGGDSVQTCT- 186
Query: 256 NALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDED 315
N LD + PF +L R K I P D + Q L P + + ++D
Sbjct: 187 NPLDTFFPFDPCMLKRSKKFIDPVYQAWED-----MSDEELQEL--RKPTRKELVEDEDD 239
Query: 316 DFLMS 320
DFL
Sbjct: 240 DFLKG 244
>gi|312380362|gb|EFR26379.1| hypothetical protein AND_07611 [Anopheles darlingi]
Length = 637
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 150/328 (45%), Gaps = 61/328 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF + FE+ +LPTH HV FL+FYFCS +LS E
Sbjct: 327 LFKIMFKQFETHVLPTHNTDHVQFLLFYFCSFKLSYAE---------------------- 364
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
H++SSL WK ++N I RQ+ Y++S+L A F+P+
Sbjct: 365 --HFISSL-------------------WKNVSNPNISPTVRQASVGYIASMLARAKFVPL 403
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+KT L E+SQW H Y+ +D H VFYSVCQA+F V+ ++ L + K
Sbjct: 404 SFLKTMLQELSQWVHGYIQRSDSMHHNQTLKA-HLVFYSVCQAIFYVVAFRSKHLTANAK 462
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N+ FLQSL L+ +V LNPLR C + + FA +T +YQ+ YC+ ++ +NAR + +
Sbjct: 463 NLSFLQSLQLSSIVTCHLNPLRVCLPTVATAFAGVTRSYQLAYCHTILERNARRKLATVY 522
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP-----------EIHCQADPIPVT 290
S N + LD + PF ++L++ I P E H A V
Sbjct: 523 S-----NSSAQTPEDCLDTFFPFDPYMLIKSGQRIEPLYLQYQVHEVDEEHGIAGGEYVA 577
Query: 291 TNTNRTQNLLIADPVSSKQADHDEDDFL 318
T N++ D D DDF+
Sbjct: 578 TTHGSGSNIVSGRKRYDSNTD-DIDDFI 604
>gi|194391086|dbj|BAG60661.1| unnamed protein product [Homo sapiens]
Length = 486
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 144/280 (51%), Gaps = 32/280 (11%)
Query: 29 YFCSLRLSIGENFIEFLWKKIANVKIYNI------FRQSC---------CHYVSSLLIHA 73
YF +LR I E IE L K N I Q+C C+ VSSLL+
Sbjct: 181 YFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETANQTCGGTDSTEGLCNMVSSLLMKV 240
Query: 74 H-------------FMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
+ E F+E LWKK+ + I RQ+ +Y+ S L A F+P
Sbjct: 241 EMKFIIIKGWKQLVLLIFGFAEAFLEPLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIP 300
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS- 179
+ +K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 301 LITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGN 360
Query: 180 -KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
K+ +++LQSLN +VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +L
Sbjct: 361 LKEGLQYLQSLNFEWIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QML 419
Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
P++ + G+ ++ T N LD + PF +L R K I P
Sbjct: 420 PVIRSTTGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDP 458
>gi|383852627|ref|XP_003701828.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Megachile rotundata]
Length = 564
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 142/277 (51%), Gaps = 51/277 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +LL +FE+ ILPTH +V +++FY CS +
Sbjct: 313 LYFDLLNIFETVILPTHASQYVQYIMFYICSFK--------------------------- 345
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++ E+FI++LW+K + + +I RQS Y++SL+ A F+
Sbjct: 346 ----------------TAVVESFIDWLWRKGTDPNVPSIIRQSSVSYIASLVATAKFVSA 389
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++K +MS+W H Y++ D + H VFY+VCQALF +IT +H+ DSKK
Sbjct: 390 GLVKAVQFKMSKWIHDYINMQDHLQYADHTRKDHTVFYAVCQALFLIITKRHNDYQDSKK 449
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
M +LQ L+L +++ +LNPL+SC++EIV +FA T YQ+ YCY +I N R N LPI
Sbjct: 450 YMLYLQELDLAKIITCKLNPLKSCHSEIVHNFAEFTRMYQLAYCYTIIENNTR-NQLPIY 508
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ D + ++ + PFS + L R I P
Sbjct: 509 NDDKI-------VTTTVENFFPFSIYTLKRSGHRIIP 538
>gi|432952702|ref|XP_004085204.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Oryzias latipes]
Length = 273
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 139/248 (56%), Gaps = 24/248 (9%)
Query: 79 SIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSY 138
++ E F++ LW+ + + + RQS Y+ S L A F+P++ ++ CL+ + W H Y
Sbjct: 1 ALTEAFLDHLWRVLQSPSQPVVLRQSAAAYLGSFLARAKFIPMQTVRACLDLLVGWIHGY 60
Query: 139 LDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
LD+ + +D + C + H FY+ CQALF + ++H ++++ KK +++LQS+NL R+V
Sbjct: 61 LDSQERSDRQVCCDLSLHGPFYASCQALFYTLVFRHRAILEAGMKKGLEYLQSMNLERVV 120
Query: 196 MSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTV 255
MSQLNPL+ C + FA++T YQ+V+CY ++ +N+R + LP+V + + + NT
Sbjct: 121 MSQLNPLKVCLPSVAVMFAAVTRKYQVVFCYTILERNSR-HALPVVHGSSGRDHVSTNT- 178
Query: 256 NALDQYSPFSTFLLVRCKSIITP-----EIHCQADPIPVTTNTNRTQNLLIADPVSSKQA 310
N LD + PF +LL R ++ P E + P TT S + +
Sbjct: 179 NPLDSFFPFDPYLLRRSGLMVEPLYQVWEELADTELFPTTT--------------SQQAS 224
Query: 311 DHDEDDFL 318
DEDDFL
Sbjct: 225 KEDEDDFL 232
>gi|426381709|ref|XP_004057477.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Gorilla gorilla gorilla]
Length = 301
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 4/202 (1%)
Query: 79 SIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSY 138
E F+E LWKK+ + I RQ+ +Y S L A F+P+ +K+CL+ + W H Y
Sbjct: 80 GFAEAFLEHLWKKLQDPSNPAIIRQAAGNYTGSFLARAKFIPLITVKSCLDLLVNWLHIY 139
Query: 139 LDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLVM 196
L+N D + C H FYS CQA+F ++H L+ K+ +++LQSLN R+VM
Sbjct: 140 LNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVM 199
Query: 197 SQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVN 256
SQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP++ + G+ ++ T N
Sbjct: 200 SQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPVIRSTTGGDSVQTCT-N 257
Query: 257 ALDQYSPFSTFLLVRCKSIITP 278
LD + PF +L R K I P
Sbjct: 258 PLDTFFPFDPCVLKRSKKFIDP 279
>gi|350413553|ref|XP_003490029.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Bombus impatiens]
Length = 567
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 143/277 (51%), Gaps = 51/277 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ ++L +FE+ ILPTH +V +++FY CS +
Sbjct: 315 LYFDILKIFETVILPTHASQYVQYIMFYICSFK--------------------------- 347
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++ E F+++LW+K +N + +I RQS Y++SLL A F+
Sbjct: 348 ----------------TAVAEAFVDWLWQKASNPNVPSIIRQSSVVYIASLLAAATFVTT 391
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++K E+S+W H Y++ D ++ +H VFYSVC+ALF +I +H+ DSKK
Sbjct: 392 GLVKAVQFEISKWIHDYINMQDHSNYIEDGNKEHSVFYSVCEALFLIIIKRHNDYPDSKK 451
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
M +LQ L+L +++ +LNPL++C+ EI FA IT YQ+ YCY VI N R N LP+
Sbjct: 452 YMLYLQELDLAKIITCKLNPLKACHPEIAHSFAEITRIYQLAYCYTVIENNTR-NQLPLF 510
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ K T ++ +SPF+T+ L + I P
Sbjct: 511 DS-------KKGTTPTVEIFSPFNTYTLQQSGQRIIP 540
>gi|328777141|ref|XP_001122533.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Apis mellifera]
Length = 559
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 146/277 (52%), Gaps = 51/277 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ ++L +FE+ ILPTH +V +++FY CS +
Sbjct: 313 LYFDVLRIFETVILPTHASQYVQYIMFYICSFK--------------------------- 345
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++ E FI++LW+K +N +I RQS Y++SL++ A F+
Sbjct: 346 ----------------AAVMEAFIDWLWRKASNPNEPSIIRQSSIAYIASLVVTATFITT 389
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++K ++S+W H+Y++ D ++ +H VFYS+CQALF +IT +H+ DS+K
Sbjct: 390 GLVKAVQFKISKWIHNYINMQDHSNYMEDENKEHNVFYSICQALFLIITKRHNDYPDSRK 449
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
M +LQ L+L +++ +LNPL++C+ EI+ +FA IT YQ+ YCY +I N R N LP+
Sbjct: 450 YMLYLQELDLAKIITCKLNPLKACHPEIMHNFAEITRIYQLAYCYTIIENNTR-NQLPLF 508
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ K T + ++ + PFS + L R I P
Sbjct: 509 DS-------KKGTTSTIENFFPFSFYTLQRSGQRIIP 538
>gi|410173215|ref|XP_003960700.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Homo sapiens]
Length = 275
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 119/197 (60%), Gaps = 4/197 (2%)
Query: 77 PVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCH 136
P+ E F+E LWKK+ + I RQ+ +Y+ S L A F+P+ +K CL+ + W H
Sbjct: 81 PLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKPCLDLLVNWLH 140
Query: 137 SYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRL 194
YL+N D + C+ H FYS CQA+F ++H L+ K+ +++LQSLN R+
Sbjct: 141 IYLNNQDSGTKAFCNVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERI 200
Query: 195 VMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNT 254
VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP++ + G+ ++ T
Sbjct: 201 VMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPVIRSTTGGDSVQTCT 259
Query: 255 VNALDQYSPFSTFLLVR 271
N LD + PF +L R
Sbjct: 260 -NPLDTFVPFDPCVLKR 275
>gi|242018464|ref|XP_002429695.1| transcription initiation factor ia, putative [Pediculus humanus
corporis]
gi|212514698|gb|EEB16957.1| transcription initiation factor ia, putative [Pediculus humanus
corporis]
Length = 555
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 156/317 (49%), Gaps = 56/317 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+N+LL VFE+ ILPTH
Sbjct: 282 LYNDLLIVFENVILPTHQ------------------------------------------ 299
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
CH++ ++ + ++ +F++FLWK + I + RQ+ Y+SS L A F+ +
Sbjct: 300 -CHHIQFVMFYICSFDTNVASDFLKFLWKIVTLPNISPVIRQTAVGYISSFLARAGFLSL 358
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+K L ++S W H+Y+ D + E +H VFYS+CQ++F +I ++H L++S
Sbjct: 359 GYLKNYLIKLSDWIHNYITLQDSSLECQLDFKQHCVFYSICQSMFYLIAFRHQDLLNSSI 418
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
+ FLQSLN+ ++V S+LNPL+ C IV +FA+IT YQ+ YCY +I N+R LP+V
Sbjct: 419 KLVFLQSLNIPKIVSSKLNPLKFCIPSIVENFAAITRAYQLAYCYTIIESNSR-KTLPLV 477
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLI 301
G +N++ +D Y PF ++L+R +ITP + T+ N + L
Sbjct: 478 GK---GGQFIINSI--VDMYFPFDPYVLLRTSELITPLYREYKSSLQDITSINSKKRRLC 532
Query: 302 ADPVSSKQADHDEDDFL 318
+ DEDDFL
Sbjct: 533 S-------GTEDEDDFL 542
>gi|193674016|ref|XP_001943833.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Acyrthosiphon pisum]
Length = 604
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 151/285 (52%), Gaps = 62/285 (21%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+L+++LL+VFES ILPT+ +H+ ++++YF S +
Sbjct: 324 LLYHDLLSVFESEILPTYNSSHIQYVIYYFLSFK-------------------------- 357
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
++ ENF +LWKK +V + RQ+ Y++S L A F+
Sbjct: 358 -----------------TTLAENFSNWLWKKCCDVSSSSTIRQAAAGYLASFLCRAPFIL 400
Query: 121 VRVIKTCLNEMSQWCHSYLDNTD----LTDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
V+K L EMS WC+SY++ D + +E+ H VFYS+CQ+LF +I+++H L
Sbjct: 401 NTVLKNTLFEMSTWCNSYINRVDKLVKVVNEDLLR--WHAVFYSMCQSLFYIISFRHHDL 458
Query: 177 VDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLN 236
+DSK+N+KF+++LNL+++V S+L+PLR C + +V+ FA IT TYQ+ YCY V+ + R+
Sbjct: 459 MDSKRNLKFMENLNLSKIVTSRLSPLRLCCSTVVNRFAHITKTYQLTYCYAVMDGHIRIT 518
Query: 237 VLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIH 281
I L + PF ++L R K I P+++
Sbjct: 519 DQSIKD-------------EWLYSFFPFDFYVLPRSKDFIMPDLY 550
>gi|260801731|ref|XP_002595749.1| hypothetical protein BRAFLDRAFT_260046 [Branchiostoma floridae]
gi|229280996|gb|EEN51761.1| hypothetical protein BRAFLDRAFT_260046 [Branchiostoma floridae]
Length = 548
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 138/277 (49%), Gaps = 45/277 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F LL FE +LPTH HV FL F + ++F+
Sbjct: 306 MFRHLLTAFEKLLLPTHASCHVQFLRF------------------------TVLHLFQ-- 339
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ + F+ F W+K+ + I RQ+ Y++S L A+F+P+
Sbjct: 340 -----------------DLADAFLNFCWRKVQSPNTPVILRQAAAAYMASFLARANFVPL 382
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ CL+ + W H Y+D+ D + H FYSVCQA+F + ++H V+SKK
Sbjct: 383 STVIACLDLLLPWIHRYIDDQDGSTRSYPDVNLHGTFYSVCQAVFYMFVFRHKQFVESKK 442
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
+ +++ LN R++ +LNPL+ C IV+ FASIT YQIV CY ++ +N R +VLP+V
Sbjct: 443 GLNYIRGLNFDRVINCRLNPLKVCLPTIVNMFASITRMYQIVMCYTIMERNNR-SVLPVV 501
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
++ + G + +N LD + PF ++L R K I P
Sbjct: 502 AS-SQGGPTDVTNLNPLDAFFPFDPYMLSRSKRFIQP 537
>gi|380026803|ref|XP_003697131.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Apis florea]
Length = 559
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 146/277 (52%), Gaps = 51/277 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ ++L +FE+ ILPTH +V +++FY CS +
Sbjct: 313 LYFDVLRIFETVILPTHASQYVQYIMFYICSFK--------------------------- 345
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++ E FI++LW+K ++ +I RQS Y++SL++ A F+
Sbjct: 346 ----------------AAVVEAFIDWLWRKASDPNEPSIIRQSSVAYIASLVVTATFITT 389
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++K ++S+W H+Y++ D ++ +H VFYS+CQALF +IT +H+ DS+K
Sbjct: 390 GLVKVVQFKISKWIHNYINMQDHSNYMEGENKEHNVFYSICQALFLIITKRHNDYPDSRK 449
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
M +LQ L+L +++ +LNPL+ C+ EI+ +FA IT YQ+ YCY +I N R N LP+
Sbjct: 450 YMLYLQELDLAKIITCKLNPLKVCHPEIMHNFAEITRIYQLAYCYTIIENNTR-NQLPLF 508
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ K T + ++ + PFS ++L R + P
Sbjct: 509 DS-------KKGTTSTIENFFPFSFYMLQRSGQRMIP 538
>gi|198427746|ref|XP_002130249.1| PREDICTED: similar to RNA polymerase I-specific transcription
initiation factor RRN3 (Transcription initiation factor
IA) (TIF-IA) [Ciona intestinalis]
Length = 588
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 53/280 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF E++ +F++ I+P H + HV F+VFY CSL+ ++F+E
Sbjct: 296 LFREIVHIFDTAIMPVHQLIHVQFVVFYICSLK----QSFVE------------------ 333
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+FIE W+K+ N + I RQ+ Y++SLL A ++P+
Sbjct: 334 ---------------------SFIEHCWQKVVNPNMPTIVRQTYICYIASLLARATYIPL 372
Query: 122 RVIKTCLNEMSQWCHSYLDN-TDLTDEEA--CSPVKHPVFYSVCQALFSVITYKHSILVD 178
+ C++ M W HSYL T+ + C +H FYS+CQA F VI +KH ++
Sbjct: 373 STVTACIDLMVGWAHSYLREVTEFISPDVYHCDITRHGTFYSICQATFYVIIFKHEDILK 432
Query: 179 SKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
SK K+ +LNL L++S LNPL++C + +VS F S +Q+VYC ++ +N R +L
Sbjct: 433 SKLGHKYFHTLNLQHLIVSPLNPLKACLSSVVSLFTSTMRQHQLVYCDTIVERNNR-QML 491
Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
P+V + L+ N L + PF +LL R + I P
Sbjct: 492 PVV------GMATLSVKNPLGSFFPFDPYLLKRSSTFIHP 525
>gi|193674014|ref|XP_001943781.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Acyrthosiphon pisum]
Length = 609
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 154/297 (51%), Gaps = 62/297 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+++LL++FES ILPT+ +H+ ++++YF S + ++ ENF +L KK +V + RQ+
Sbjct: 326 LYHDLLSIFESEILPTYNSSHIQYVIYYFLSFKTTLAENFSNWLLKKCCDVSSSSTLRQA 385
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S L A F I N
Sbjct: 386 AAGYLASFLCRAPF----------------ITN--------------------------- 402
Query: 122 RVIKTCLNEMSQWCHSYLDNTD----LTDEEACSPVKHPVFYSVCQALFSVITYKHSILV 177
++K L EMS WC+ Y+++ D + DEE H VFYS+CQALF +I+++H L+
Sbjct: 403 NMLKNTLFEMSVWCNKYINSVDKSVKVVDEELLR--WHSVFYSMCQALFYIISFRHQDLM 460
Query: 178 DSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNV 237
D+K+N++F+++LNL+ +V +L+PLR C +++V FA IT TYQ+ YCY V+ + R+
Sbjct: 461 DNKRNLRFMENLNLSNIVTCRLSPLRLCCSKVVDRFALITKTYQLTYCYVVMDGHIRVTD 520
Query: 238 LPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTN 294
I L Y PF ++L R K++I P+++ D I + +
Sbjct: 521 QSIKD-------------EWLYSYFPFDPYVLPRSKNMIIPDLYRDIDSIKSSKGGD 564
>gi|390338869|ref|XP_784172.3| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Strongylocentrotus purpuratus]
Length = 351
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 44/269 (16%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
VL LL VFES +LPTH +HV FL FYFCS FRQ
Sbjct: 56 VLHRYLLQVFESVLLPTHASSHVQFLFFYFCS-------------------------FRQ 90
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
I ++F++ LW++ N + RQ+ Y++S + A+++P
Sbjct: 91 G------------------IVDSFVDALWRRFINPNTPAVVRQTTASYMASFVARANYLP 132
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
+ CL+ M W H Y++N + + H FYS+CQA+ + Y+H L+++
Sbjct: 133 ASTVNACLDLMVSWIHCYINNQESASRFSKEVKVHGPFYSLCQAVLYIFVYRHKQLLENN 192
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
K + ++ SLNL R+V +LNPL+ C +V+ FA++ +Q+ +CY V+ NAR + LP+
Sbjct: 193 KGLHYIMSLNLERVVTCRLNPLKVCLPSVVNIFATLARKFQVAFCYTVMEHNAR-SKLPV 251
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLL 269
+ G+ N LD + PF ++L
Sbjct: 252 FKLNTFGSGAMATPGNPLDSFFPFDPYVL 280
>gi|355717377|gb|AES05913.1| RRN3 RNA polymerase I transcription factor-like protein [Mustela
putorius furo]
Length = 325
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 45/231 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 138 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 176
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 177 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFIPL 214
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 215 ITVKSCLDLLLNWLHRYLNNQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 274
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIH 230
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I
Sbjct: 275 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTIIE 325
>gi|157131927|ref|XP_001655975.1| transcription initiation factor RRN3 [Aedes aegypti]
gi|108871354|gb|EAT35579.1| AAEL012265-PA [Aedes aegypti]
Length = 606
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 133/277 (48%), Gaps = 50/277 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F LLA+F+ ILPTH HV FLVFY CS F+QS
Sbjct: 309 MFKILLALFDKHILPTHNTHHVQFLVFYICS-------------------------FKQS 343
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y FI +LWK++ N + RQ+ Y++S+L A ++P+
Sbjct: 344 YVEY------------------FITYLWKQVCNPNVSTPMRQAAVGYIASMLARAKYVPL 385
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++K+ L E S W H+Y+ D S H VFYSVCQA+F V+ ++ L + K
Sbjct: 386 VLLKSTLQEFSYWVHNYIQRMDSMHYNQ-SLKAHMVFYSVCQAIFYVVAFRSKHLTSNAK 444
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N+ FLQSL L+ +V LNPLR C + + FA +T +Q+ YC+ ++ +NAR + +
Sbjct: 445 NLTFLQSLQLSSIVTCHLNPLRVCLPAVATAFAGVTRAHQLAYCHTILERNARRKLATVY 504
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
++ LD + PF ++L + I P
Sbjct: 505 KNES------QTPEECLDTFFPFDPYMLKKSGKRIEP 535
>gi|195385170|ref|XP_002051281.1| GJ13145 [Drosophila virilis]
gi|194147738|gb|EDW63436.1| GJ13145 [Drosophila virilis]
Length = 617
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 152/327 (46%), Gaps = 67/327 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
F L+ +FE +LP+H HV F++FY CS+R
Sbjct: 321 FFKTLVHIFEEVLLPSHNTHHVQFVIFYACSIR--------------------------- 353
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ E F+ LW K+ N + +I R + Y++S L A F+P+
Sbjct: 354 ----------------PAYTEIFLSALWHKVQNPNVSSIIRHAAVSYIASFLARAKFVPL 397
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I L E+S W ++Y++++D + CS + VF+SVCQA+F +I ++ L ++K
Sbjct: 398 GTITYYLKELSNWANNYINDSDEFSSKNCSLKANMVFFSVCQAIFYLIAFRARDLTINQK 457
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N+ L +L L+RL M NPLR C + + FA +T T+Q+ YC+ V+ +NAR + I
Sbjct: 458 NLALLNTLQLSRLAMCHFNPLRYCLPPVATAFAGVTRTHQLAYCHTVLERNARRKLATIY 517
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP-----EIHCQADPIPVTTNTNRT 296
D KL L+ + PF ++L I P ++H T
Sbjct: 518 GHD------KLMPEETLETFFPFDPYILPLSNKFIEPSYLVYKVH----------ELEET 561
Query: 297 QNLLIADPVSSKQADH---DEDDFLMS 320
+ +IA+ + K+ D +EDDF+++
Sbjct: 562 ADCVIAETMRRKRGDSEMIEEDDFILA 588
>gi|158299728|ref|XP_319773.4| AGAP009024-PA [Anopheles gambiae str. PEST]
gi|157013657|gb|EAA14800.4| AGAP009024-PA [Anopheles gambiae str. PEST]
Length = 602
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 134/280 (47%), Gaps = 56/280 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF +L F++ ILP H H F++FY CS +LS E
Sbjct: 306 LFKIVLNQFDAHILPAHNTDHAQFIMFYICSFKLSYAE---------------------- 343
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
H++SSL WK + N+ RQ+ Y++S+L A ++P+
Sbjct: 344 --HFISSL-------------------WKNVNNLNKSPNVRQTSVGYIASMLARAKYVPL 382
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+K+ L EMS W H+Y+ D S H VFYSVCQA+F V+ ++ + L S K
Sbjct: 383 NYLKSMLLEMSHWVHNYIQRCDSMHYNQ-SLKAHLVFYSVCQAIFYVVAFRANHLTSSAK 441
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N+ FLQSL L+ +V QLNPLR C + + FA IT YQ+ YC+ ++ +NAR
Sbjct: 442 NLTFLQSLQLSSIVTCQLNPLRVCLPTVATAFAGITRAYQLAYCHTILERNARRK----- 496
Query: 242 STDALGNIIKLNTV---NALDQYSPFSTFLLVRCKSIITP 278
L + K NT + LD + PF ++L + I P
Sbjct: 497 ----LATVYKNNTQLPEDCLDTFFPFDPYMLKKSGKRIEP 532
>gi|156403718|ref|XP_001640055.1| predicted protein [Nematostella vectensis]
gi|156227187|gb|EDO47992.1| predicted protein [Nematostella vectensis]
Length = 683
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 130/267 (48%), Gaps = 52/267 (19%)
Query: 7 LAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYV 66
L FE ILPTH H+ F++FY CSL +F S
Sbjct: 338 LKSFEKVILPTHACCHIQFVMFYICSLD---------------------EVFTNS----- 371
Query: 67 SSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKT 126
+E WKK+AN I RQ+ Y++SL+ A ++ + +KT
Sbjct: 372 -----------------LLEVCWKKVANPGEAGILRQASAAYMASLVARAKYISISTVKT 414
Query: 127 CLNEMSQWCHSYLDNTDLTDEEACSPV---KHPVFYSVCQALFSVITYKHSILVDSKKNM 183
CL ++ W H Y+D+ D EAC KH FYSVCQ++F + ++H +++ +
Sbjct: 415 CLELLTHWVHCYIDDHD----EACLGADVNKHGPFYSVCQSIFYIFVFRHRQCLETPEGQ 470
Query: 184 KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVST 243
KF+ LN R+V +LNPL+ C +V FA +T +Q+V CY VI +N R ++LP+ S
Sbjct: 471 KFVSKLNFQRIVTCKLNPLKVCLPTVVDLFAQVTKLHQVVLCYTVIERNKR-SMLPVSSA 529
Query: 244 DALGNII-KLNTVNALDQYSPFSTFLL 269
I +L+ N LD + PF +LL
Sbjct: 530 ITSNRTISQLSLQNPLDSFFPFDPYLL 556
>gi|403274159|ref|XP_003928854.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Saimiri boliviensis boliviensis]
Length = 730
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 128/279 (45%), Gaps = 65/279 (23%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ L+ +F+ +LPTH HV FL+FY CS +L
Sbjct: 335 LYRNLINIFDKLLLPTHASCHVQFLMFYLCSFKLGFA----------------------- 371
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F+E LWK F+
Sbjct: 372 --------------------EAFLEHLWKXXXXXXX------------------XIFLFS 393
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL N D + C H FYS CQA+F ++H L+
Sbjct: 394 STVKSCLDLLVNWLHIYLHNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 453
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 454 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 512
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
++ + A G+ ++ T N LD + PF +L R K I P
Sbjct: 513 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDP 550
>gi|195164524|ref|XP_002023097.1| GL21145 [Drosophila persimilis]
gi|194105182|gb|EDW27225.1| GL21145 [Drosophila persimilis]
Length = 596
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 146/322 (45%), Gaps = 63/322 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
F LL +F+ +LP+H HV F++F+ CS+R
Sbjct: 306 FFKTLLYIFDEVLLPSHNTHHVQFVIFHVCSIR--------------------------- 338
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ E F+ LW K+ N + I R + Y++S L A F+P+
Sbjct: 339 ----------------SAYSEAFLSSLWLKVQNPNVSAIIRHAAVGYIASYLARAKFVPL 382
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
IK LNE+S W +SY+ ++D + S + VF+SVCQ++F +I ++ D K
Sbjct: 383 STIKLYLNELSNWANSYIGDSDQYSSQNGSLKANMVFFSVCQSIFYLIAFRAK---DLTK 439
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
++ FLQ L L+R+ MS LNPLR C + + FA +T T+Q+ YC+ V+ +NAR + +
Sbjct: 440 DLHFLQLLPLSRIAMSHLNPLRYCLPAVATAFAGVTRTHQLAYCHTVLERNARRKLATVY 499
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLI 301
D K L+ + PF ++L I P + + + +
Sbjct: 500 GHD------KAMPEETLETFFPFDPYMLKLSNKYIEPNY--------LVYKAHEMEESVA 545
Query: 302 ADPVSSKQADH---DEDDFLMS 320
+ K+ D +EDDF+++
Sbjct: 546 TETFRRKRGDSEMVEEDDFILA 567
>gi|170049642|ref|XP_001870906.1| RNA polymerase I-specific transcription initiation factor RRN3
[Culex quinquefasciatus]
gi|167871391|gb|EDS34774.1| RNA polymerase I-specific transcription initiation factor RRN3
[Culex quinquefasciatus]
Length = 603
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 144/329 (43%), Gaps = 71/329 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
++ LL +F+ ILPTH HV FL+FY CS F QS
Sbjct: 310 VYGLLLKLFDKHILPTHNTHHVQFLMFYCCS-------------------------FDQS 344
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
GE FIE L K + N I RQ+ YV+SLL A ++P+
Sbjct: 345 ------------------YGERFIEHLLKMVRNPNISTPTRQAAVGYVASLLARAKYVPM 386
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++K L + S W H YL+ +D ++ H VFYSVCQA+F V+ ++ L + K
Sbjct: 387 PLLKKTLQDFSDWVHGYLNRSDSLHNQSLK--AHLVFYSVCQAIFYVVAFRSKQLTATPK 444
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N+ FLQ+L LT + LNPLR C + + F ++ +QI YC ++ +N R +
Sbjct: 445 NLAFLQTLQLTSIANCLLNPLRVCVPGVATAFVAVARAHQIAYCNTIMERNERRRTFILF 504
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP--------EIHCQADPI-PVTTN 292
+ AL + LD + PF +LL + I P E +A+ + P
Sbjct: 505 NNGALA------PDDCLDTFFPFDPYLLKKSGKRIEPIFLQYQSCEAEAEAEVLSPAARG 558
Query: 293 TNRTQNLLIADPVSSKQADHDEDDFLMSV 321
R +++ D DDF+ V
Sbjct: 559 RKRYESM-----------SEDVDDFIQEV 576
>gi|221131114|ref|XP_002161101.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Hydra magnipapillata]
Length = 546
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 151/316 (47%), Gaps = 69/316 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L +LL VFE+ IL T +HV F++FYF SL E F++
Sbjct: 265 LSKDLLLVFENVILKTQQSSHVQFIIFYFASLNKHFYEEFLD------------------ 306
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
CC W + N I RQ+ Y++S L A F+
Sbjct: 307 CC-------------------------WTILKNPNKAVIIRQASVSYIASFLARAKFVDQ 341
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+VI+ + ++S W Y+++ D ++ KH FYS CQALF V Y + + ++
Sbjct: 342 KVIREQMKKLSDWILRYIEHQD-SNHAVAEIKKHGAFYSACQALFYVFIYNYKTIFETSN 400
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
++F +SLN +R++ S+LNPL+ C +VS+FA IT Y++V+CY++I +N R N L
Sbjct: 401 GIEFAKSLNFSRIIFSRLNPLKFCMETVVSYFARITRLYEVVFCYSIIERNNR-NSLASF 459
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLI 301
S GN +++ N L+ + PF +LL P+ C +PI + + RTQN
Sbjct: 460 S---FGN-NNISSDNQLEMFFPFDPYLL--------PKSVCYIEPIYLEW-SGRTQN--- 503
Query: 302 ADPVSSKQADHDEDDF 317
+ +DEDD+
Sbjct: 504 --------SSNDEDDY 511
>gi|195998610|ref|XP_002109173.1| hypothetical protein TRIADDRAFT_52940 [Trichoplax adhaerens]
gi|190587297|gb|EDV27339.1| hypothetical protein TRIADDRAFT_52940 [Trichoplax adhaerens]
Length = 610
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 146/325 (44%), Gaps = 67/325 (20%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+LF +LL F++ ILPTH I H+ F +F CS E F++
Sbjct: 305 LLFTDLLTAFDTIILPTHDICHIQFYLFVTCSY----DEEFVK----------------- 343
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
+ W K + + + RQ+ Y++S + A F+P
Sbjct: 344 ----------------------QMLHLCWNKFEDTNVPAVLRQTSVAYIASFVARAKFVP 381
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK---HPVFYSVCQALFSVITYKHSILV 177
+R+I TC+ W H YLD + C+ H +FYS CQ LF +I +KH L+
Sbjct: 382 LRIINTCIEIFCTWIHRYLD-----EHGNCTTADIDTHCLFYSACQCLFYMIVFKHENLM 436
Query: 178 DSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNV 237
++ K L L R+V S+LNPLR C +V FA+IT+ +++VYCY +I N R
Sbjct: 437 ADEEGKKLLNRGGLQRIVTSKLNPLRFCMPILVKFFAAITSEHELVYCYTIIESNKR-EQ 495
Query: 238 LPIVSTDALGNIIKL--NTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNR 295
LP T G +L + N LD + PF +LL R I P D + +N
Sbjct: 496 LP---TALFGGDKQLTRDINNQLDTFFPFDPYLLSRSAKTIEPLYQSWDDNL--NSNAAC 550
Query: 296 TQNLLIADPVSSKQADHDEDDFLMS 320
T+N ++ + D+DD+L S
Sbjct: 551 TKN--------QQEENEDDDDYLSS 567
>gi|198473450|ref|XP_001356293.2| GA17133 [Drosophila pseudoobscura pseudoobscura]
gi|198139462|gb|EAL33356.2| GA17133 [Drosophila pseudoobscura pseudoobscura]
Length = 609
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 63/322 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
F LL +F+ +LP+H HV F++F+ CS+R
Sbjct: 319 FFKTLLYIFDEVLLPSHNTHHVQFVIFHVCSIR--------------------------- 351
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ E F+ LW K+ N + I R + Y +S L A F+P+
Sbjct: 352 ----------------SAYSEAFLSSLWLKVQNPNVSAIIRHAAVGYTASYLARAKFVPL 395
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
IK LNE+S W +SY+ ++D + S + VF+SVCQ++F +I ++ D K
Sbjct: 396 STIKLYLNELSNWANSYIGDSDQYSSQNGSLKANMVFFSVCQSIFYLIAFRAK---DLTK 452
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
++ FLQ L L+R+ MS LNPLR C + + FA +T T+Q+ YC+ V+ +NAR + +
Sbjct: 453 DLHFLQLLPLSRIAMSHLNPLRYCLPAVATAFAGVTRTHQLAYCHTVLERNARRKLATVY 512
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLI 301
D K L+ + PF ++L I P + + + +
Sbjct: 513 GHD------KAMPEETLETFFPFDPYMLKLSNKYIEPNY--------LVYKAHEMEESVA 558
Query: 302 ADPVSSKQADH---DEDDFLMS 320
+ K+ D +EDDF+++
Sbjct: 559 TETFRRKRGDSEMVEEDDFILA 580
>gi|391332958|ref|XP_003740893.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Metaseiulus occidentalis]
Length = 588
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 138/296 (46%), Gaps = 54/296 (18%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
+ + L VF+ IL T+ H+ FL+ Y CS R
Sbjct: 307 YRKFLTVFDKFILSTYKCLHIQFLLLYICSKR---------------------------- 338
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
PV I ++FI+FLW K+ N +FRQ +Y+ SLL F+ V
Sbjct: 339 --------------PV-ITDHFIDFLWHKVQNPNTPVVFRQIAVYYLGSLLCRCSFIGVG 383
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKN 182
+K L M+++ HSY+ + KH FYSVCQ++F I ++H +++
Sbjct: 384 TLKDSLLLMTRFLHSYVAQSSSAQSLTVDLSKHGTFYSVCQSVFYCIAFRHKEIIEGDDG 443
Query: 183 MKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVS 242
+ +LQ LNL ++V S LNPL+ + + HFA++T YQ+VYCY + +N R + LP+ +
Sbjct: 444 LGYLQRLNLEQIVTSPLNPLKVISPAVGIHFANVTRHYQVVYCYAIFERNQR-SALPMAN 502
Query: 243 TDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQN 298
GN LD Y PF ++L+R K + P D + + + + QN
Sbjct: 503 P---GN-------QKLDVYFPFDPYVLLRSKRFVEPIYREYVDHLKSSVDEDPEQN 548
>gi|307183418|gb|EFN70240.1| RNA polymerase I-specific transcription initiation factor RRN3
[Camponotus floridanus]
Length = 554
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 134/281 (47%), Gaps = 51/281 (18%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+L+ ++L FE+ ILPTH +V F++FY CS +
Sbjct: 310 ILYIDILRAFETIILPTHASQYVQFIMFYICSFK-------------------------- 343
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
+ E F ++LW+K+ + + + RQS Y++SLL A F+
Sbjct: 344 -----------------AIVAETFTDWLWRKVIDPNVAPVIRQSAVCYIASLLATASFIS 386
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
++K ++++ W +Y++ + + H VFYSVCQA F + +H V+SK
Sbjct: 387 NGLVKQTMSQLIIWIRNYINIQEYKQYIDDNMKSHVVFYSVCQAFFHLFIARHKEFVNSK 446
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
M FLQ L++ R+V +LNPL+ C +EIV FA IT+TYQ+ YCY +I N R N LPI
Sbjct: 447 NGMLFLQELDIPRIVTCRLNPLKICISEIVHSFADITSTYQLAYCYTIIENNER-NQLPI 505
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIH 281
+K + + + PF ++ L + I H
Sbjct: 506 FG-------MKTHLPVLISNFFPFESYTLQHSRQRIVSLFH 539
>gi|443692852|gb|ELT94357.1| hypothetical protein CAPTEDRAFT_221291 [Capitella teleta]
Length = 567
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 132/276 (47%), Gaps = 52/276 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F ELL VF+ ++ T+ +H F +FY CS
Sbjct: 282 IFRELLTVFDKIVVKTYASSHTQFFMFYICSF---------------------------- 313
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ LL+ E F+++LWK++ N +FRQ+ Y++S + A ++
Sbjct: 314 -----NDLLV----------EGFLDYLWKRVQNPSHGMVFRQASVAYMASFIARAKYVNG 358
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ CL+ + W H+Y+ N+ +D H FYSVCQALF ++ ++H L+ S K
Sbjct: 359 SSVTACLDLLVAWIHNYIKNS--SDSVKVDIEHHGTFYSVCQALFYILVFRHKELLASSK 416
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
+K +Q NL +V +LNPL+ C I + F SI +Q+ +C V+ +N R + LPI
Sbjct: 417 GVKRVQGFNLQTIVTCRLNPLKFCLPIIANTFVSIARIHQLAFCDTVMEKNRRQH-LPIA 475
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIIT 277
+ D K+ N LD + PF ++L R K IT
Sbjct: 476 AQD------KMMQHNPLDSFFPFDPYILTRSKDFIT 505
>gi|28574300|ref|NP_788084.1| Tif-IA, isoform A [Drosophila melanogaster]
gi|16768904|gb|AAL28671.1| LD10456p [Drosophila melanogaster]
gi|22947075|gb|AAF57260.3| Tif-IA, isoform A [Drosophila melanogaster]
gi|220953122|gb|ACL89104.1| Tif-IA-PA [synthetic construct]
gi|220960008|gb|ACL92540.1| Tif-IA-PA [synthetic construct]
Length = 611
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 62/323 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF LL +F+ +LP+H HV F++FY SLR E F++ LW K+ N + + R +
Sbjct: 320 LFKMLLYLFDEVLLPSHNTHHVQFILFYATSLRSVYSEAFLDSLWTKVQNPNVSAVIRHA 379
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S L A F+P+S V Y
Sbjct: 380 AVGYMASFLSRARFLPLS--------------TVTFY----------------------- 402
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
L E+++W H+Y+D++D ++ CS + VFYSVCQA+F +I ++ L S K
Sbjct: 403 ------LKELTRWAHTYIDDSDAY-KQNCSLKANLVFYSVCQAVFYLIAFRAKDLTASSK 455
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
++ FLQSL L+RL M LNPLR C A + + FA +T TYQ+ YC+ V+ +NAR + +
Sbjct: 456 DLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCHTVLERNARRKLATVY 515
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPE--IHCQADPIPVTTNTNRTQNL 299
+ K L+ + PF ++L K I ++ D +N+ +
Sbjct: 516 GHE------KCMPDETLESFFPFDPYVLKLSKKYIETNYMVYQSNDTDEYVYGSNKYGH- 568
Query: 300 LIADPVSSKQADH---DEDDFLM 319
S K+ D +ED+FL+
Sbjct: 569 ------SRKRGDSEMLEEDEFLI 585
>gi|194877714|ref|XP_001973923.1| GG21453 [Drosophila erecta]
gi|190657110|gb|EDV54323.1| GG21453 [Drosophila erecta]
Length = 615
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 158/325 (48%), Gaps = 64/325 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF LL +F+ +LP+H HV F++FY SLR +Y+
Sbjct: 320 LFKMLLYLFDEVLLPSHNTHHVQFIIFYATSLR------------------SVYS----- 356
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F++ LW K+ N + + R + Y++S L A F+P+
Sbjct: 357 --------------------EAFLDSLWVKVQNPNVSAVIRHTAVGYMASFLSRARFLPL 396
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ L E+++W H+Y+D++D ++ CS + VFYSVCQA+F +I ++ L S K
Sbjct: 397 SSVIFYLRELTKWAHTYIDDSDAY-KQNCSLKANLVFYSVCQAVFYLIAFRARDLTASSK 455
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
++ FLQSL L+RLVM LNPLR C A + + FA +T TYQ+ YC+ V+ +NAR + +
Sbjct: 456 DLLFLQSLQLSRLVMCHLNPLRYCLAPVATAFAGVTRTYQLAYCHTVLERNARRKLATVY 515
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL- 300
+ K L+ + PF ++L K I + I + +N T +
Sbjct: 516 GHE------KCMPDETLESFFPFDPYVLKLSKKYI--------ESIYMVYQSNDTDEYVY 561
Query: 301 --IADPVSSKQADH---DEDDFLMS 320
I S K+ D +ED+FL++
Sbjct: 562 GSIKYDRSRKRGDSEMLEEDEFLIA 586
>gi|449475705|ref|XP_004176687.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Taeniopygia guttata]
Length = 565
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 45/224 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L++VF+ ILPTH HV + +FY CS +L E
Sbjct: 309 LYRDLVSVFDKLILPTHASCHVQYFMFYICSFKLGFAEA--------------------- 347
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F++ LWKK+ + ++ RQ+ Y+ S L A F+P+
Sbjct: 348 ----------------------FLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPI 385
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN D C H FYS CQA+F + ++H L+D
Sbjct: 386 VTVKACLDLLVNWLHKYIDNQDKGANAYCDVALHGPFYSTCQAVFYTLIFRHKQLLDGNL 445
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
+K + +LQSLN R+VM QLNPL+ C +V+ FA+IT + + +
Sbjct: 446 RKGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRSKKTI 489
>gi|195356327|ref|XP_002044628.1| GM18796 [Drosophila sechellia]
gi|194133175|gb|EDW54691.1| GM18796 [Drosophila sechellia]
Length = 615
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 154/325 (47%), Gaps = 64/325 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF LL +F+ +LP+H HV F++FY SLR E F++ LW K+ N + + R +
Sbjct: 320 LFKMLLYLFDEVLLPSHNTHHVQFILFYATSLRSVYSEAFLDSLWTKVQNPNVSAVIRHA 379
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S L A F+P+S V Y
Sbjct: 380 AVGYMASFLSRARFLPLS--------------TVIFY----------------------- 402
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
L E+++W H+Y+D++D ++ CS + VFYSVCQA+F +I ++ L S K
Sbjct: 403 ------LKELTKWAHAYIDDSDAY-KQNCSLKANLVFYSVCQAVFYLIAFRARDLTASSK 455
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
++ FLQSL L+RL M LNPLR C A + + FA +T TYQ+ YC+ V+ +NAR + +
Sbjct: 456 DLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCHTVLERNARRKLATVY 515
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLI 301
+ K L+ + PF ++L K I D + +N T +
Sbjct: 516 GHE------KCMPDETLESFFPFDPYVLKLSKKYI--------DSNYMAYQSNDTDEYVY 561
Query: 302 ADPV---SSKQADH---DEDDFLMS 320
S K+ D +ED+FL++
Sbjct: 562 GSNKYGHSRKRGDSEMLEEDEFLIA 586
>gi|363739456|ref|XP_003642175.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Gallus gallus]
gi|53131744|emb|CAG31843.1| hypothetical protein RCJMB04_12c14 [Gallus gallus]
Length = 568
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 45/224 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L++VF+ ILPTH HV + +F+ CSL+
Sbjct: 308 LYRDLVSVFDKLILPTHASCHVQYFIFHICSLK--------------------------- 340
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ E F++ LWKK+ + ++ RQ+ Y+ S L A F+PV
Sbjct: 341 ----------------SGLAEAFLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPV 384
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K CL+ + W H Y+DN D C H FYS CQA F + ++H L+D
Sbjct: 385 VTVKACLDLLVNWMHKYIDNQDTGANAYCDVALHGPFYSACQAAFYTLIFRHKQLLDGNL 444
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
+K + +LQSLN R+VM QLNPL+ C +V+ FA+IT + + +
Sbjct: 445 RKGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRSKKTI 488
>gi|355756575|gb|EHH60183.1| hypothetical protein EGM_11500, partial [Macaca fascicularis]
Length = 517
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 107/218 (49%), Gaps = 45/218 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASIT 217
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT
Sbjct: 480 KEGLRYLQSLNFERIVMSQLNPLKVCLPSVVNFFAAIT 517
>gi|240954815|ref|XP_002399771.1| transcription initiation factor ia, putative [Ixodes scapularis]
gi|215490633|gb|EEC00276.1| transcription initiation factor ia, putative [Ixodes scapularis]
Length = 194
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 14/200 (7%)
Query: 80 IGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYL 139
+ + F+++LWKK+ N + RQ+ Y+ S L A F+P+ ++ CL+ + +W H+YL
Sbjct: 1 LADAFLDYLWKKVQNPSTATVIRQASAFYIGSFLARAKFVPLSTVRDCLSLVCRWAHAYL 60
Query: 140 DNTDLTDEEACSPV-----KHPVFYSVCQALFSVITYKHSILVDSKKN---MKFLQSLNL 191
+ EE + + +H FY+VCQ V + H L K + FL+ LNL
Sbjct: 61 SSL----EEGSALLHPDVARHGTFYAVCQTALYVFAFHHRSLAHGDKGEERLPFLRDLNL 116
Query: 192 TRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIK 251
LVM LNPL+ C +V FAS+ YQ+VYCY+VI +N R + LP+ + L +
Sbjct: 117 EALVMCPLNPLKVCLPAVVQRFASVARHYQLVYCYSVIERNQR-SALPVEAGTMLYGASR 175
Query: 252 LNTVNALDQYSPFSTFLLVR 271
+ V ALD + PF +LL R
Sbjct: 176 GDDV-ALDAFFPFDPYLLKR 194
>gi|195433343|ref|XP_002064674.1| GK23990 [Drosophila willistoni]
gi|194160759|gb|EDW75660.1| GK23990 [Drosophila willistoni]
Length = 627
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 129/277 (46%), Gaps = 49/277 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
F LL +F+ +LP+H HV F++F CSLR
Sbjct: 329 FFKMLLFIFDEVLLPSHNTCHVQFVIFQVCSLR--------------------------- 361
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ E F+ LW K+ N + +I R + Y++S + + F+P+
Sbjct: 362 ----------------PAYAEAFLSSLWLKVQNPNVSSIIRHAAVSYMASFMARSKFLPL 405
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
IK L E+S+W Y+D+TD + + S + VF+SVCQALF +I ++ L K
Sbjct: 406 STIKFYLTELSKWSLRYIDDTDEYNSQNGSLKANMVFFSVCQALFYLIAFRAKDLTAGTK 465
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
+ FLQSL L+RL M LNPLR C + + FA IT T+Q+ YC+ V+ +NAR + +
Sbjct: 466 ELLFLQSLQLSRLAMCHLNPLRYCLPPVATAFAGITRTHQLAYCHTVLERNARRKLATVY 525
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
D K L+ + PF +LL I P
Sbjct: 526 GHD------KAMPEETLETFFPFDPYLLKLSNKYIEP 556
>gi|426381325|ref|XP_004057298.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase I-specific
transcription initiation factor RRN3 [Gorilla gorilla
gorilla]
Length = 579
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 11/197 (5%)
Query: 124 IKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KK 181
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+ K+
Sbjct: 350 VKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKE 409
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
+++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP++
Sbjct: 410 GLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPVI 468
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLI 301
+ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 469 RSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF-- 520
Query: 302 ADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 521 KKPMKKDIVEDEDDDFL 537
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGE 39
L+ +L+ +F+ +LPTH HV F +FY CS +L GE
Sbjct: 304 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLRSGE 341
>gi|195475784|ref|XP_002090163.1| Tif-IA [Drosophila yakuba]
gi|194176264|gb|EDW89875.1| Tif-IA [Drosophila yakuba]
Length = 615
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 136/275 (49%), Gaps = 50/275 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF LL +F+ +LP+H HV F++FY SLR +Y+
Sbjct: 320 LFKMLLYLFDEVLLPSHNTHHVQFILFYVTSLR------------------SVYS----- 356
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
E F++ LW K+ N + + R + Y++S L A F+ +
Sbjct: 357 --------------------EAFLDSLWLKVQNPNVSAVIRHAAVGYMASFLSRARFLSL 396
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ L E+++W H+Y+D++D + CS + VFYSVCQA+F +I ++ L S K
Sbjct: 397 STVIFYLKELTKWAHTYIDDSDAY-KHNCSLKTNLVFYSVCQAVFYLIAFRAKDLTASSK 455
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
++ FLQSL L+RL M LNPLR C A + + FA +T TYQ+ YC+ V+ +NAR + +
Sbjct: 456 DLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCHTVLERNARRKLATVY 515
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
+ K L+ + PF ++L+ K I
Sbjct: 516 GHE------KFMPDETLESFFPFDPYVLMLSKKYI 544
>gi|195116148|ref|XP_002002618.1| GI11780 [Drosophila mojavensis]
gi|193913193|gb|EDW12060.1| GI11780 [Drosophila mojavensis]
Length = 617
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 73/330 (22%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
F L+ +F+ +LP+H HV F++F+ CS+R + E F+ LW+K+ N + +I R +
Sbjct: 321 FFKTLVHIFDEVLLPSHNTHHVQFVIFHACSIRPAYAEIFLTSLWQKVQNPNVSSIIRHA 380
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S L A F+P+S
Sbjct: 381 AVSYIASFLARAKFVPLS------------------------------------------ 398
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I L E+S W ++Y++++D + CS + VF+SVCQA+F +I ++ L + K
Sbjct: 399 -TITYYLKELSNWANNYINDSDEFSSKNCSLKANMVFFSVCQAMFYLIAFRARDLTINHK 457
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N+ L +L L+RL M NPLR C + + FA +T T+Q+ YC+ V+ +NAR + I
Sbjct: 458 NLTLLNTLQLSRLAMCHFNPLRYCLPPVATAFAGVTRTHQLAYCHTVLERNARRKLATIY 517
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP--------EIHCQADPIPVTTNT 293
D KL L+ + PF ++L I P E+ A+ + + T
Sbjct: 518 GHD------KLMPEETLETFFPFDPYILPLSNKYIEPNYLVYRVHELEESAENVAIET-- 569
Query: 294 NRTQNLLIADPVSSKQADH---DEDDFLMS 320
V K+ D ++DDF+++
Sbjct: 570 -----------VRRKRGDSEMVEDDDFILA 588
>gi|194769629|ref|XP_001966905.1| GF22755 [Drosophila ananassae]
gi|190619862|gb|EDV35386.1| GF22755 [Drosophila ananassae]
Length = 608
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 147/324 (45%), Gaps = 61/324 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN LL F+ +LP+H HV F++F+ SLR
Sbjct: 317 IFNILLFTFDEILLPSHNTHHVQFVIFFITSLR--------------------------- 349
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ E F+ LW+K+ N + I R Y++S L A F+P+
Sbjct: 350 ----------------QTYSEAFLSSLWQKVQNPNVSAIIRHGAIGYLASFLARAKFVPL 393
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ L E+S+W HSY+D++D + CS + VF+SVCQA+F +I ++ L + K
Sbjct: 394 CTLTLYLMELSKWAHSYIDDSDEYSQN-CSLKSNLVFFSVCQAIFYLIAFRVRDLTATTK 452
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
++ FLQSL L+RL M NPLR C A I + FA +T TYQ+ YC+ V+ +NAR + +
Sbjct: 453 DLLFLQSLQLSRLAMCHFNPLRYCLAAIATAFAGVTRTYQLAYCHTVLERNARRKLATVY 512
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLI 301
+ K L+ + PF ++L I I T +
Sbjct: 513 GHE------KCMPEETLETFFPFDPYMLKMSNKYIE---------INYLIYQGNTDDNAT 557
Query: 302 ADPVSSKQADHD--EDDFLMSVDS 323
+P+ K+ D + EDD + +D
Sbjct: 558 PEPLRRKRGDSEMVEDDDFIKIDK 581
>gi|322799107|gb|EFZ20560.1| hypothetical protein SINV_14873 [Solenopsis invicta]
Length = 560
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 57/281 (20%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+L+ ++L FE+ ILPTH +V +++FY CS R
Sbjct: 316 LLYFDILCAFETAILPTHASQYVQYIMFYICSFR-------------------------- 349
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
P+ I E F +LW K+ + + + RQ+ Y+SSL A F+
Sbjct: 350 ----------------PI-IAETFTNWLWHKVTDPNVAPVLRQTAVCYISSLQATASFVS 392
Query: 121 VRVIKTCLNEMSQWCHSYL---DNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV 177
++K ++ ++ W H Y+ +N+ D++ P H VFYSVCQA F + ++ V
Sbjct: 393 PGLVKNTISNLTIWIHKYITSQENSKYIDDDR-QP--HVVFYSVCQAFFHLFVARYKYFV 449
Query: 178 DSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNV 237
+S + FLQ+L+++++V +LNPL+ C+ ++V FA IT+ YQ+ YCY +I N R N
Sbjct: 450 ESNNGILFLQNLDISKIVTCKLNPLKMCDTKVVHDFADITSMYQLAYCYAIIENNER-NR 508
Query: 238 LPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
LPI + N + + N + PF ++ L I P
Sbjct: 509 LPIF---GMKNELPVLVPN----FFPFESYTLEHSGRRIAP 542
>gi|395756261|ref|XP_003780101.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 232
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 45/219 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +L TH HV F +FY CS +L E
Sbjct: 57 LYRDLINIFDKLLLSTHASCHVQFFMFYLCSFKLGFAEA--------------------- 95
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 96 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 133
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+++CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 134 ITVRSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 193
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITN 218
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT
Sbjct: 194 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITK 232
>gi|195051354|ref|XP_001993077.1| GH13629 [Drosophila grimshawi]
gi|193900136|gb|EDV99002.1| GH13629 [Drosophila grimshawi]
Length = 617
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 146/327 (44%), Gaps = 67/327 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
F L+ +F+ +LP+H HV F++F+ CS I L+ +I
Sbjct: 321 FFKMLMYIFDEVLLPSHNTHHVQFVIFHACS---------IRPLYTEI------------ 359
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+ LWKK+ N + ++ R + Y++S L A F P+
Sbjct: 360 ----------------------FLSGLWKKVQNPNVSSVKRHAAVSYIASFLARARFAPL 397
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I L E+S W ++Y++++D + CS + VFYSVCQA+F +I ++ L K
Sbjct: 398 STITYYLKELSNWANTYINDSDEFSSKNCSLKANMVFYSVCQAMFYLIAFRARDLTIHPK 457
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N+ L +L L+RL M NPLR C + + FA + T+Q+ YC+ V+ +NAR +
Sbjct: 458 NLTLLSTLQLSRLAMCHFNPLRYCLPPVATAFAGVARTHQLAYCHTVLERNARRKLATFY 517
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP-----EIHCQADPIPVTTNTNRT 296
D KL L+ + PF ++L I P ++H + +
Sbjct: 518 GHD------KLMPEEILETFFPFDPYILPLSNKFIEPNYLVYKVH----------ELDES 561
Query: 297 QNLLIADPVSSKQADH---DEDDFLMS 320
+ V K+ D +EDDF+++
Sbjct: 562 AECAATEAVRRKRGDSEMVEEDDFILA 588
>gi|321471665|gb|EFX82637.1| putative Tif-IA [Daphnia pulex]
Length = 546
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 125/277 (45%), Gaps = 55/277 (19%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
+ ++ A FES ILP GI HV +L+FY CS +
Sbjct: 285 YQDMYATFESLILPAAGIHHVHYLMFYICSTK---------------------------- 316
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
++ E F E LW R+SC Y++S L A F+P++
Sbjct: 317 ---------------TALYEAFTERLWVIFLTPSSQLNIRKSCADYLASFLGRASFVPMK 361
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDSKK 181
+ CL+ + QW H+YLD + A ++ H FY+ C F V+ +H +V+ +K
Sbjct: 362 YVIDCLDRVCQWIHAYLDRQSKGEGAAVFKIRAHAAFYAACHIPFYVVAARHRDIVNDRK 421
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
+ LQ+L+L R+V S LNPLR C+A V FA + Q+V+C+ ++ +N R+ +P
Sbjct: 422 LLARLQALDLNRIVNSPLNPLRYCHATTVRQFAESASHLQVVFCHTIMIRNQRV-CIPEA 480
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+TD +D PF +LL ++P
Sbjct: 481 TTDTF----------VMDTEYPFEKYLLPSSMDFVSP 507
>gi|332017201|gb|EGI57994.1| RNA polymerase I-specific transcription initiation factor RRN3
[Acromyrmex echinatior]
Length = 592
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 142/283 (50%), Gaps = 54/283 (19%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+++++++ FE IL +GI +V +++FY CS F Q
Sbjct: 341 IMYSDIVYAFEKEILNMYGIRYVQYIMFYMCS-------------------------FGQ 375
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIA---NVKIYNIFRQSCCHYVSSLLIHAH 117
+ +SI E F +LW+++ N + I+RQ+ Y+SSLL +A
Sbjct: 376 ---------------LRISIEEKFTNWLWREVVVKPNSTVPPIYRQTAVCYISSLLANAS 420
Query: 118 FMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV 177
F+ ++++T + +++QW + Y+ + + + E KH VFYSVCQA F + ++ V
Sbjct: 421 FISPQLVETMIFKLTQWLNKYITSQEYS-EYIEDYAKHIVFYSVCQAFFYLFVARYKHFV 479
Query: 178 DSKKNMKFLQ--SLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARL 235
K KFLQ SL+++++V +LNPL+ C+ +IV FA T TY + YC +VI N R
Sbjct: 480 FDLKYEKFLQNLSLSISKIVTCKLNPLKMCDTKIVHAFAQTTRTYGLAYCDSVIEYNER- 538
Query: 236 NVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
N LPI D+ ++ + + PF ++ L ITP
Sbjct: 539 NQLPIFGMDSHLPVL-------IPNFFPFESYTLEHSGRRITP 574
>gi|410050078|ref|XP_003315055.2| PREDICTED: putative RRN3-like protein FLJ77916-like [Pan
troglodytes]
Length = 262
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 78 VSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHS 137
E F+E LWKK+ + I RQ+ +Y+ S L A F+P+ +K+C + + W H
Sbjct: 112 TGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLTTVKSCPDLLVNWLHI 171
Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
YL+N D + C H FYS CQA+F ++H L+ K+ +++LQSLN R+V
Sbjct: 172 YLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIV 231
Query: 196 MSQLNPLRSCNAEIVSHFASITN 218
MSQLNPL+ C +V+ FA+IT
Sbjct: 232 MSQLNPLKICLPSVVNFFAAITK 254
>gi|344236902|gb|EGV93005.1| RNA polymerase I-specific transcription initiation factor RRN3
[Cricetulus griseus]
Length = 224
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 101/185 (54%), Gaps = 11/185 (5%)
Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
YL+N D + C H FYS CQA+F ++H ++ K+ +++LQSLN R+V
Sbjct: 2 YLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQILSGNLKEGLRYLQSLNFERVV 61
Query: 196 MSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTV 255
+SQLNPL+ C +V+ FA++TN YQ+V+CY ++ +N+R +LP++ + A G+ ++ T
Sbjct: 62 LSQLNPLKICLPSVVNFFAAVTNKYQLVFCYTIMERNSR-QMLPVIRSTAGGDSVQTCT- 119
Query: 256 NALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDED 315
N LD + PF +L R K I P D + Q P + + ++D
Sbjct: 120 NPLDTFFPFDPCVLKRSKKFIDPIYQIWED-----MSAEELQEF--KKPTKKEPVEDEDD 172
Query: 316 DFLMS 320
DFL
Sbjct: 173 DFLKG 177
>gi|33585914|gb|AAH55781.1| Rrn3 protein, partial [Mus musculus]
Length = 214
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 12/169 (7%)
Query: 150 CSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLVMSQLNPLRSCNA 207
C H FYS CQA+F + ++H L+ K+ +++LQSLN R+V+SQLNPL+ C
Sbjct: 4 CDVALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLP 63
Query: 208 EIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTF 267
++V+ FA+ITN YQ+V+CY ++ +N+R +LP++ + A G+ ++ T N LD + PF
Sbjct: 64 QVVNFFAAITNKYQLVFCYTIMERNSR-QMLPVIRSTAGGDSVQTCT-NPLDTFFPFDPC 121
Query: 268 LLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDD 316
+L R K I DPI + L + KQ DEDD
Sbjct: 122 VLKRSKKFI--------DPIYQIWEDGSAEELQEFKKSTKKQVVEDEDD 162
>gi|357625575|gb|EHJ75974.1| transcription initiation factor RRN3 [Danaus plexippus]
Length = 342
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 137/311 (44%), Gaps = 61/311 (19%)
Query: 9 VFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSS 68
VFE +LPTHGI HV FL+ Y S+ + LW
Sbjct: 66 VFERVVLPTHGIRHVQFLILYTISISQQCADRIFTNLW---------------------- 103
Query: 69 LLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCL 128
L+ A + G +A R++ +++ LL +P + L
Sbjct: 104 -LVAAGLHGLGPG---------ALAT-------RRTAASHLAGLLARCVRVPNSRLIQYL 146
Query: 129 NEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQS 188
M+ WCHSYL T + + V H F+++C A+F ++ +K+ L +K+++ F++S
Sbjct: 147 RLMADWCHSYLTATQESTVADNTKV-HGAFHAICHAIFYLVAFKNHHLFVNKESINFVES 205
Query: 189 LNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGN 248
LNL RLV LNPLR+C ++ F+S+T ++Q+VYC +I +N R +
Sbjct: 206 LNLPRLVTCNLNPLRTCPPQVTRAFSSVTRSHQVVYCQAIIEKNTRSTL----------- 254
Query: 249 IIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSK 308
N V D++ P+ + L II P D + N + +L +
Sbjct: 255 ---QNAVQKYDEWFPYDPYTLPISGKIIWPLCMEYKDMFKDSDNETQYTSL-------KR 304
Query: 309 QADHDEDDFLM 319
+ + ++DD+LM
Sbjct: 305 KLEAEDDDYLM 315
>gi|307197693|gb|EFN78860.1| RNA polymerase I-specific transcription initiation factor RRN3
[Harpegnathos saltator]
Length = 486
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 56/278 (20%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+L+ ++LA F+ +L +V ++ FY CS++ ++
Sbjct: 240 ILYQDILATFDKVLLRIDRTQYVQYIGFYLCSIKPAL----------------------- 276
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
++L+ H LWKK+ + + RQ Y+SSL+ A ++
Sbjct: 277 ------TALISH---------------LWKKVTSWDEAPVIRQLAVSYISSLVATASYIT 315
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
+K + + W H Y+ + TD + H VFYSVCQA F + KH L ++
Sbjct: 316 SETLKVTICRFTNWIHDYIGMDETTDNYVDLKL-HNVFYSVCQAFFYLFVAKHEELTKTR 374
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
N+ F+Q L++ +++ +LNPL CN +IV FA IT YQ+ YC +I N R LPI
Sbjct: 375 CNILFVQQLDIPKIISCKLNPLVVCNGKIVRSFADITKMYQLAYCDAIIEDNTR-KQLPI 433
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ L L + PF ++ L + I P
Sbjct: 434 FGEEEL----------LLPDFFPFESYTLEHSRHWIAP 461
>gi|3355303|gb|AAC27822.1| Unknown gene product [Homo sapiens]
Length = 153
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 78 VSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHS 137
+ E F+E LWK + + I RQ+ +Y+ S L A F+ + +K CL+ + W H
Sbjct: 1 MGFAEAFLEHLWKNLQDPSNPAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHI 60
Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
YL+N D + C H FYS CQA+F ++H L+ K+ +++ QSLN R+V
Sbjct: 61 YLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYPQSLNFERIV 120
Query: 196 MSQLNPLRSCNAEIVSHFASITN 218
MSQLNPL+ C +V+ FA+ITN
Sbjct: 121 MSQLNPLKICLPSVVNFFAAITN 143
>gi|121941406|sp|Q2M238.1|RN3P1_HUMAN RecName: Full=Putative RRN3-like protein RRN3P1; AltName: Full=RNA
polymerase I transcription factor homolog pseudogene 1
gi|193785138|dbj|BAG54291.1| unnamed protein product [Homo sapiens]
Length = 152
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 2/151 (1%)
Query: 78 VSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHS 137
+ E F+E LWK + + I RQ+ +Y+ S L A F+ + +K CL+ + W H
Sbjct: 1 MGFAEAFLEHLWKNLQDPSNPAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHI 60
Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
YL+N D + C H FYS CQA+F ++H L+ K+ +++ QSLN R+V
Sbjct: 61 YLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYPQSLNFERIV 120
Query: 196 MSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
MSQLNPL+ C +V+ FA+IT Y +
Sbjct: 121 MSQLNPLKICLPSVVNFFAAITKMKTCGYGW 151
>gi|158256930|dbj|BAF84438.1| unnamed protein product [Homo sapiens]
Length = 152
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Query: 78 VSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHS 137
+ E F+E LWK + + I RQ+ +Y+ S L A F+ + +K CL+ + W H
Sbjct: 1 MGFAEAFLEHLWKNLQDPSNPAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHI 60
Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
YL+N D + C+ H FYS CQA+F ++H L+ K+ +++ QSLN R+V
Sbjct: 61 YLNNQDSGTKAFCNVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYPQSLNFERIV 120
Query: 196 MSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
MSQLNPL+ C +V+ FA+IT Y +
Sbjct: 121 MSQLNPLKICLPSVVNFFAAITKMKTCGYGW 151
>gi|339248087|ref|XP_003375677.1| putative glutaredoxin-like protein [Trichinella spiralis]
gi|316970937|gb|EFV54790.1| putative glutaredoxin-like protein [Trichinella spiralis]
Length = 781
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 45/247 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF L++VF ++LP + V F+ FY CSLR K Y +RQ
Sbjct: 498 LFESLISVFIRSVLPLRSSSVVQFIWFYMCSLR------------------KKY--YRQ- 536
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F++ LW+ + + + R + Y++S + A+F+P+
Sbjct: 537 ----------------------FVKLLWECTVSASVSSPLRLNAASYLASFIARANFIPI 574
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I L +QW Y+ D D P H FY +CQA+F + +++ L++
Sbjct: 575 EEIMKYLLSWTQWIQQYICEQD--DVNRSHPQLHCSFYCICQAVFYIFSFRCRELINLTN 632
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
L LNL R+V +LNPL+ C+ +V +FA+++ YQ+ +CY + +N RL L +V
Sbjct: 633 GYDNLVRLNLHRIVTCELNPLQYCSNHLVRNFANVSRNYQLAFCYVTLERNDRLKQLRLV 692
Query: 242 STDALGN 248
+ LGN
Sbjct: 693 AEWNLGN 699
>gi|320168695|gb|EFW45594.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 942
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 116/279 (41%), Gaps = 60/279 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF LL FE ILPTH V FL+F CS
Sbjct: 536 LFTILLRNFEHRILPTHRSRFVQFLLFRICS----------------------------- 566
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F P + E F+ F+ +K + RQS Y++S + A ++P+
Sbjct: 567 -------------FDP-RLAELFLGFILQKALVEGGHTAIRQSAASYMASFVARAKYLPL 612
Query: 122 RVIKTCLNEMSQWCHSYLD--NTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS 179
++ CL W Y++ + E + +H VF+ CQA Y+H+ L+
Sbjct: 613 PMVCKCLEVSCNWLLQYIEVHEHKVASAELVNVAQHSVFFYTCQAAMYTFCYRHAELLAL 672
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+ + F+Q L R+V + NPL+ +V FA IT Y++VYC+N+I +N ++ VLP
Sbjct: 673 ENGIAFIQRLCFQRIVGCRFNPLKVVLPYVVKEFAKITRAYELVYCHNIIDRNKKI-VLP 731
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
S L+ + PF + L R K I P
Sbjct: 732 ASSV--------------LEAFFPFDPYSLRRSKRYIEP 756
>gi|270014376|gb|EFA10824.1| hypothetical protein TcasGA2_TC030743, partial [Tribolium
castaneum]
Length = 530
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 56/277 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ ++L VF+ +ILPT+ HV F++F CS +
Sbjct: 260 LYQDILTVFDQSILPTYNTHHVQFVMFVLCSFK--------------------------- 292
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++ E F +LWKK+ N + ++ RQ+ +Y+ S + A F
Sbjct: 293 ----------------TTLTEAFFNYLWKKVCNPNVASVIRQAAVNYIVSFIARATFHVE 336
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
T M + + + +P+ + +SV L V ++
Sbjct: 337 GDFATN-GRMDPLVYRHSGRPRVRQFGPKAPLC--LLHSVSSPLLC-------DFVPAQG 386
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
+ ++LNL ++V S+LNPLR C +V +FA+IT YQ+ YCY++I N+R N LP V
Sbjct: 387 FSQHKKNLNLAKIVTSRLNPLRVCQPAVVQNFAAITRKYQLAYCYSIIEHNSR-NTLPTV 445
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
D G + + N L+ PF F+L R + + P
Sbjct: 446 YRDEKGFVTV--SSNVLEACYPFDPFVLSRSSAKVHP 480
>gi|440792455|gb|ELR13676.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Acanthamoeba castellanii str. Neff]
Length = 569
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 128/292 (43%), Gaps = 63/292 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F L+ +F++ IL TH +V FL+FY C+
Sbjct: 215 MFFMLMQLFDTFILKTHKSKYVQFLLFYVCA----------------------------- 245
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
M ++ F+ +L +K+ +V + + R +C Y+ S L + +P
Sbjct: 246 --------------MDINYTHAFVRYLLEKVMDVSNHPLTRSTCAAYLGSFLARSTLVPT 291
Query: 122 RVIKTCLNEMSQWCHSY-LDNTD-LTDEEACSPVKHPVFYSVCQALFSVITYKHSIL-VD 178
++++ L MS+W Y N D + D E H +FYSVCQA+F V+ +K+ L +
Sbjct: 292 QLVQEPLQIMSRWALQYGTQNRDTMPDAEV-----HGLFYSVCQAVFYVVCFKYQQLALR 346
Query: 179 SKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTY--QIVYCYNVIHQNARLN 236
+ + FL SL L ++ S+LNPLR C + +V+ F + + V+ +N R+
Sbjct: 347 TPEGAAFLDSLELDAIIQSRLNPLRLCASTVVTEFLKVAADLCGLLPSARAVLERNKRVV 406
Query: 237 VLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIP 288
+ + GN N LD + PF +LL I+ I+ PIP
Sbjct: 407 ---LATKSVFGN------ANQLDSFFPFDPYLLRHSSKHIS-AIYQTWSPIP 448
>gi|296424575|ref|XP_002841823.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638072|emb|CAZ86014.1| unnamed protein product [Tuber melanosporum]
Length = 618
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 116/283 (40%), Gaps = 70/283 (24%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F ++ +F S ILPT+ + FLVF+ + F C
Sbjct: 350 FTLIMRLFNSIILPTYRSRYTQFLVFWAAQKAPRFSDTF--------------------C 389
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+++ L +A P + RQ+ YV+S + A MP +
Sbjct: 390 AAAITNALDNA-LQPGT----------------------RQAAAAYVASFIARAKLMPGQ 426
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL------ 176
++ N M +W +++D + E K FYSVCQA+ + ++ L
Sbjct: 427 YVQMATNVMCRWLGTFVDERS-AECEGPDVSKWGGFYSVCQAVMYIFCFRWKDLRVVEED 485
Query: 177 ---VDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNA 233
+ ++ M FLQ LN + ++S+ NPL+ C+ +V FA I + +Q+VYC+ +I QN
Sbjct: 486 EFGIIGERWMGFLQDLN--KAIISKFNPLKVCSPAVVETFAKIASYFQLVYCFTIIEQNK 543
Query: 234 RLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
R L++ LD Y PF + L R K I
Sbjct: 544 RKG---------------LSSQEELDSYFPFDPYNLRRSKQWI 571
>gi|410985185|ref|XP_003998904.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Felis catus]
Length = 564
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 11/141 (7%)
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
K + +LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N R +LP+
Sbjct: 394 KGLTYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTIIERNNR-QMLPV 452
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPI-PVTTNTNRTQNL 299
+ + A G+ ++ T N LD + PF +L R K I DPI + N + +
Sbjct: 453 IRSTAGGDSVRTCT-NPLDTFFPFDPCVLKRSKKFI--------DPIYQIWENMSAEELQ 503
Query: 300 LIADPVSSKQADHDEDDFLMS 320
PV + + ++DDFL
Sbjct: 504 EFTKPVRKQVVEDEDDDFLKG 524
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIG 38
L+ +L+ +F+ +LPTH HV F +FY CS +L +G
Sbjct: 343 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLILG 379
>gi|328771118|gb|EGF81158.1| hypothetical protein BATDEDRAFT_1623, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 533
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 124/323 (38%), Gaps = 87/323 (26%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF L +F+ ++PTH + FL+FY S + +F+ L ++ V+
Sbjct: 289 LFYAFLDIFDRVMIPTHRLRCTQFLLFYMSSFNKTFPNDFMGLLVSRLFQVE-------- 340
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
S L+I R S Y+ S L A ++ +
Sbjct: 341 -----SPLVI------------------------------RISSAAYLGSYLSRAKYVDI 365
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSV--ITYKHSILVDS 179
++TCL ++Q+ SYLDN + + + + V YS QA+ V +K +L S
Sbjct: 366 SSVRTCLGLLNQFTQSYLDNNESSMGPRINVERFGVLYSAVQAILYVFCFRWKELMLTGS 425
Query: 180 KKNMKFLQSL------NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNA 233
+ + + R++MS+ PLR C+ IV FA I + I+YCY +I +
Sbjct: 426 EDKVSIHHGQLPPELKDFQRVLMSRFAPLRVCSETIVQEFAKIMHALDIMYCYPLIGFTS 485
Query: 234 RLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNT 293
++ L N LD + PF L + + ITP
Sbjct: 486 SVSSL---------------QTNRLDSFFPFDPITLPKSRGYITP--------------- 515
Query: 294 NRTQNLLIADPVSSKQADHDEDD 316
L D V S + + DE+D
Sbjct: 516 ------LYQDWVGSNEMESDEED 532
>gi|312083431|ref|XP_003143859.1| hypothetical protein LOAG_08279 [Loa loa]
Length = 673
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 134/321 (41%), Gaps = 64/321 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+ ELL VFE +L HG+ ++ FL FY CSL +S ++F+ +LW
Sbjct: 346 ILKELLVVFEEHLLMAHGLKNISFLWFYVCSLDMSYPKDFLSWLW--------------- 390
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++V+ L N WKK Q Y+ S+L A ++ +
Sbjct: 391 --NFVTRL-------------NQTPNDWKKA----------QGATCYIGSMLSRASYIDL 425
Query: 122 RVIKTCLNEMSQWCHSYLDNT-DLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
L +S WC +Y++ D T + +H FY+V QA +++ +V +K
Sbjct: 426 STTMEWLEVLSHWCTTYVNEMIDRTTDATAGSTRHGTFYAVFQAFLVAFCFRYREIVQAK 485
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ +K + L +V S L PL + + FA+I+ + Q+VY V H +LP
Sbjct: 486 EMIK-IHHWGLGHIVHSTLEPLSYISHPVALCFATISRSMQLVY---VNH------ILPA 535
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP---EIHCQADPIPVTTNTNRTQ 297
+ + + + PF ++ L R S I P + A+ + N +
Sbjct: 536 KPAEMM----------PFEPHFPFDSYSLERSLSFIAPLMRKFSPLAEDVSTLKNELLWK 585
Query: 298 NLLIADPVSSKQADHDEDDFL 318
N++ A + + D+ +FL
Sbjct: 586 NVIEAMDCHTYEGDNGSWEFL 606
>gi|393908885|gb|EFO20210.2| hypothetical protein LOAG_08279 [Loa loa]
Length = 663
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 134/321 (41%), Gaps = 64/321 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+ ELL VFE +L HG+ ++ FL FY CSL +S ++F+ +LW
Sbjct: 346 ILKELLVVFEEHLLMAHGLKNISFLWFYVCSLDMSYPKDFLSWLW--------------- 390
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
++V+ L N WKK Q Y+ S+L A ++ +
Sbjct: 391 --NFVTRL-------------NQTPNDWKKA----------QGATCYIGSMLSRASYIDL 425
Query: 122 RVIKTCLNEMSQWCHSYLDNT-DLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
L +S WC +Y++ D T + +H FY+V QA +++ +V +K
Sbjct: 426 STTMEWLEVLSHWCTTYVNEMIDRTTDATAGSTRHGTFYAVFQAFLVAFCFRYREIVQAK 485
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ +K + L +V S L PL + + FA+I+ + Q+VY V H +LP
Sbjct: 486 EMIK-IHHWGLGHIVHSTLEPLSYISHPVALCFATISRSMQLVY---VNH------ILPA 535
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP---EIHCQADPIPVTTNTNRTQ 297
+ + + + PF ++ L R S I P + A+ + N +
Sbjct: 536 KPAEMM----------PFEPHFPFDSYSLERSLSFIAPLMRKFSPLAEDVSTLKNELLWK 585
Query: 298 NLLIADPVSSKQADHDEDDFL 318
N++ A + + D+ +FL
Sbjct: 586 NVIEAMDCHTYEGDNGSWEFL 606
>gi|170589770|ref|XP_001899646.1| Hypothetical 75.1 kDa protein C36E8.1 in chromosome III, putative
[Brugia malayi]
gi|158592772|gb|EDP31368.1| Hypothetical 75.1 kDa protein C36E8.1 in chromosome III, putative
[Brugia malayi]
Length = 552
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 114/278 (41%), Gaps = 61/278 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+ ELL VFE +L HG+ ++ FL FY CSL S +NF+ +LW
Sbjct: 243 IIKELLVVFEEHLLMAHGLKNISFLWFYVCSLDTSYQKNFLRWLWS-------------- 288
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+V+ L N WKK Q Y+SS+L A ++ +
Sbjct: 289 ---FVTRL-------------NQTPNDWKKA----------QGAACYISSMLSRASYINL 322
Query: 122 RVIKTCLNEMSQWCHSYLDN-TDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
L +S WC +Y++ D T +H FY+V QA +++ +V +K
Sbjct: 323 STTMEWLEVLSHWCTTYVNEMVDRTTAATAGSTRHGTFYAVFQAFLVAFCFRYREIVQAK 382
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ K + L ++ S L PL + + FA+I+ + Q+VY V H +LP
Sbjct: 383 EVAK-IHHWGLGHIIHSTLEPLSYISHPVALCFATISRSVQLVY---VNH------ILPA 432
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ + + + PF ++ L R S I P
Sbjct: 433 KPAEMM----------PFESHFPFDSYSLKRSLSFIAP 460
>gi|402592097|gb|EJW86026.1| hypothetical protein WUBG_03063 [Wuchereria bancrofti]
Length = 629
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 42/229 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+ ELL VFE +L HG+ ++ FL FY CSL S +NF+ +LW I +
Sbjct: 309 ILKELLVVFEEHLLMAHGLKNISFLWFYVCSLDTSYQKNFLSWLWSFITRL--------- 359
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
N WKK Q Y+SS+L A ++ +
Sbjct: 360 ---------------------NQTPNDWKKA----------QGAACYISSMLSRASYINL 388
Query: 122 RVIKTCLNEMSQWCHSYLDN-TDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
L +S WC +Y++ D T +H FY+V QA +++ +V +K
Sbjct: 389 STTMEWLEVLSHWCTTYVNEMVDRTTGATAGSTRHGTFYAVFQAFLVAFCFRYREIVQAK 448
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
+ K + L +V S L PL + + FA+I+ + Q+VY +++
Sbjct: 449 EVAK-IHHWGLGHIVHSTLEPLSYISHPVALCFATISRSVQLVYVNHIL 496
>gi|66804835|ref|XP_636150.1| hypothetical protein DDB_G0289587 [Dictyostelium discoideum AX4]
gi|60464502|gb|EAL62647.1| hypothetical protein DDB_G0289587 [Dictyostelium discoideum AX4]
Length = 706
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 81 GENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLD 140
E+FI +L+ K+ N I+++ R +C Y+ + A F+P + K ++ + +Y++
Sbjct: 405 AESFIRYLFGKLCNETIHSMHRHACAAYIGGFISRASFLPSHITKLVFKDLLGFAMAYVE 464
Query: 141 NTDLTDEEAC--SPVKHPVFYSVCQALFSVITYKHSILVD---------SKKNMKFLQSL 189
D+ P H +FYSVCQ+++ + +++S+++D +K +F Q L
Sbjct: 465 RVDVKSNPNIYPDPHNHSLFYSVCQSIYYIFCFRNSVILDFTDFKNDKKDEKQREFWQDL 524
Query: 190 N--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQI-VYCYNVIHQNARLNVLPIVSTDAL 246
+ ++ MS+LNP + C +V F + I C ++ N NVL ST
Sbjct: 525 HAAFRKISMSRLNPFKVCLKSVVRQFCCVCLRVGIFTKCTGILKTNK--NVLLSKSTITG 582
Query: 247 GNIIKLNTVNALDQYSPFSTFLL 269
+ + N D + PF +LL
Sbjct: 583 SSAAPTVSNNQFDSFFPFDPYLL 605
>gi|297715320|ref|XP_002834033.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 91
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 134 WCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNL 191
W H Y +N D + C H FYS CQA+F ++H L+ K+ +++LQSLN
Sbjct: 5 WLHIYFNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLRYLQSLNF 64
Query: 192 TRLVMSQLNPLRSCNAEIVSHFASIT 217
R+VMSQLNPL+ C +V+ FA+IT
Sbjct: 65 ERIVMSQLNPLKICLPSVVNFFAAIT 90
>gi|343427253|emb|CBQ70781.1| related to RRN3-RNA polymerase I specific transcription factor
[Sporisorium reilianum SRZ2]
Length = 856
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 106/268 (39%), Gaps = 69/268 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF+ LL +F ILPT HV FL+F+F SL NF +F
Sbjct: 450 LFHTLLGIFARNILPTFRSRHVQFLLFWFNSL----DANFSDF----------------- 488
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+ V + ++ ++ + + R + YV+S + A ++
Sbjct: 489 -------------FLGVLLEKSLYSKRGGEVGDKDEPAVIRSAAAGYVASFVSRASYVDA 535
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV----KHPVFYSVCQALFSVITYK-HSIL 176
+ L + + +++D + TD +A + H VFYSV QA F + ++ +
Sbjct: 536 HTTRVVLYNLCAYMDAHIDESSRTDTDAGAAAPGTSAHAVFYSVVQAAFYIFCFRWRDLK 595
Query: 177 VDSKK--------------------NMKFLQSLN----------LTRLVMSQLNPLRSCN 206
VD + ++ L L L R V S+LNPL+ C+
Sbjct: 596 VDGQDAGADDLDYQDADEIGGGMHDSVGSLGQLGAEAWCDGLTSLQRAVTSRLNPLKFCS 655
Query: 207 AEIVSHFASITNTYQIVYCYNVIHQNAR 234
A +V FA I +YCY++I N R
Sbjct: 656 ANVVKQFARIAQHTGFLYCYSIIEANNR 683
>gi|384486478|gb|EIE78658.1| hypothetical protein RO3G_03362 [Rhizopus delemar RA 99-880]
Length = 501
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 117/294 (39%), Gaps = 80/294 (27%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F L+ +F+ +L T + FL+FYFCSL NV Y+ +
Sbjct: 194 IFYALVDIFDRAVLKTLKSRYTQFLLFYFCSL-----------------NVHEYSDY--- 233
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E L + I + N+ R + Y+SS + A F+
Sbjct: 234 ----------------------FLEHLLQHITDPLRPNVTRVAAAAYISSYVARAKFLDS 271
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV---- 177
I+ + +S WC +Y+D T + ++ KH VFYSV QA + +K LV
Sbjct: 272 STIQRVVLALSTWCDNYVD-THESSVQSLDCTKHDVFYSVVQATMYIFCFKWRDLVIDND 330
Query: 178 -----DSKKNM-------------KFLQSL---------NLTRLVMSQLNPLRSCNAEIV 210
D + +M F NL RLVMS+ NPL+ C+ +V
Sbjct: 331 LEIEEDMEDDMYSEEHRHLTRPEHGFGSGASRTWCFGLRNLPRLVMSKFNPLKICSPAVV 390
Query: 211 SHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPF 264
FA ++ + +Y Y V+ +N + V LG+ L TV + P+
Sbjct: 391 RQFAKLSRSTHFMYVYPVLEKNRDIFV------PGLGSSNLLQTVQTFFPFDPY 438
>gi|330806575|ref|XP_003291243.1| hypothetical protein DICPUDRAFT_81920 [Dictyostelium purpureum]
gi|325078602|gb|EGC32245.1| hypothetical protein DICPUDRAFT_81920 [Dictyostelium purpureum]
Length = 691
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 26/253 (10%)
Query: 81 GENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLD 140
E+FI +L+ K+ N I+++ R +C Y+ + A ++P ++K ++ + +Y+D
Sbjct: 387 AESFIRYLFGKLCNETIHSMHRHACAAYIGGFVSRASYLPHHIVKLVFKDLLGFAMNYVD 446
Query: 141 NTDLTDEE--ACSPVKHPVFYSVCQALFSVITYKHSILV------DSKKNMK---FLQSL 189
D+ P H +FYSVCQ+++ + ++++I++ + KKN K F Q L
Sbjct: 447 RVDVKSNPNVGPDPYNHSLFYSVCQSIYYIFCFRNTIILEISNDKEDKKNEKQREFWQDL 506
Query: 190 N--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVY-CYNVIHQNARLNVLPIVSTDAL 246
+ ++ S+LNP + C +V F + I C ++ N N+L +T +
Sbjct: 507 HAAFKKISTSRLNPFKVCLKSVVRQFCCVCLRVGIFQKCTGILKTNK--NILLSKTTVSS 564
Query: 247 GNIIKLNTVNALDQYSPFSTFLLVRCKSIITPE-IHCQADPIPVTTNTNRTQNLLIADPV 305
+ + N D + PF +LL IH + I + ++L
Sbjct: 565 ASSAPTVSNNQFDSFFPFDPYLLYHSSKFFQNSYIHWKD--IRKDGDEENLEDL------ 616
Query: 306 SSKQADHDEDDFL 318
S Q DEDD L
Sbjct: 617 -SDQETEDEDDIL 628
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLR 34
+FN L+ VF+ST+LPT+ + +L+FY C ++
Sbjct: 256 IFNNLVKVFDSTVLPTYKSKYTQYLLFYICRIQ 288
>gi|114661533|ref|XP_001152385.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pan troglodytes]
Length = 105
Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 81 GENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLD 140
E F+E LWKK+ + I RQ+ +Y+ S L A F+P+ +K+C + + W H YL+
Sbjct: 3 AEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLTTVKSCPDLLVNWLHIYLN 62
Query: 141 NTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV 177
N D + C H FYS CQA+F ++H L+
Sbjct: 63 NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLL 99
>gi|413934685|gb|AFW69236.1| hypothetical protein ZEAMMB73_457339 [Zea mays]
Length = 620
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 113/277 (40%), Gaps = 53/277 (19%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F L A+F+S +L H F++FY CSL IG+ F FL
Sbjct: 305 FVTLKAIFKSHVLRVHKSKFAQFIMFYACSLHPEIGDGFANFL----------------- 347
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+ FI+ + A I R S YV S L A F+ V
Sbjct: 348 ------------------TDIFIDKDKNEDA------ITRVSAVSYVGSYLSRARFISVN 383
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKN 182
++ + L + WC Y + L + +P+KH +FY+ CQA+ V+ ++ ++D
Sbjct: 384 IVVSVLKRLVDWCDYYCGHQ-LDNGVTANPIKHQLFYASCQAVMYVLCFRLRSIMDYPNL 442
Query: 183 MKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV-IHQNARLNVLPIV 241
+ L + + +++ L PL+ C IV+ F + + + +H++A + L
Sbjct: 443 KQQLFRMRIRDILVHPLQPLKVCLPSIVNEFLRQATAASLFHAPAISMHEDAVESDL--- 499
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ A G + N LD + PF +LL I P
Sbjct: 500 -SKAFGGL------NRLDMFFPFDPYLLKESDRYIRP 529
>gi|238881819|gb|EEQ45457.1| hypothetical protein CAWG_03784 [Candida albicans WO-1]
Length = 556
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 121/290 (41%), Gaps = 63/290 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN + ++F+S ILPTH + F++F+ + + ++++
Sbjct: 297 LFNTINSLFKSHILPTHFTKSIQFILFHITQFQPELADSYL------------------- 337
Query: 62 CCHYVSSLLIHAHFMPVSIGEN---FIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHF 118
LLI F P I E +++L IA K N+ R VS L
Sbjct: 338 ------VLLIDVAFNPSEILEKRLKAMQYLSSYIARAK--NLSRHQVIFIVSYL------ 383
Query: 119 MPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVD 178
V + + E Q S D++ + +FY+ QAL + ++H +L
Sbjct: 384 --VGWLNKFIIEREQEVESS------GDKQVGGMERFKLFYAAFQALLYIFCFRHELLST 435
Query: 179 SKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNA 233
++ + KF Q R ++++ NPL+ C+ +V FA + + YCY++I N
Sbjct: 436 TENDWECDLDKFFQ-----RAILTKFNPLKFCDETVVYIFAKLATKLNVCYCYSIIEHNK 490
Query: 234 R-----LNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
R N LP A+GN + L+ Y PF +L KSI++P
Sbjct: 491 RERMLHTNALP----SAVGNFKQKQEFLDLEAYFPFDPLVLPISKSIVSP 536
>gi|308490973|ref|XP_003107678.1| hypothetical protein CRE_13367 [Caenorhabditis remanei]
gi|308250547|gb|EFO94499.1| hypothetical protein CRE_13367 [Caenorhabditis remanei]
Length = 653
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 41/229 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF+ L V EST+L + ++ F+ YF SL+ + +E LW+
Sbjct: 351 LFDTFLEVLESTMLNATHVQYISFVWLYFGSLKAEYEQKVLEHLWQ-------------- 396
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ I P ++ Q Y+++ L A ++
Sbjct: 397 -------VTIRMPRAPADARKS-------------------QGAASYLAAFLARAKYVKK 430
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV-KHPVFYSVCQALFSVITYKHSILVDSK 180
T L E+ W Y+D + + +H FY+V QA F V +++ V +
Sbjct: 431 NTAFTWLEEIYTWLRHYVDQFGSGSSQILPGLQRHGTFYAVSQAFFLVFAFRYKEFVKDQ 490
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
+ ++ ++ + R+V S L PLR + + F++IT + Q+VYC +VI
Sbjct: 491 EMLETIRRWGVGRVVHSPLEPLRFVSKPVARCFSAITRSLQLVYCNHVI 539
>gi|19114586|ref|NP_593674.1| ribosomal DNA (rDNA) transcription factor Rrn3 [Schizosaccharomyces
pombe 972h-]
gi|1351726|sp|Q10110.1|RRN3_SCHPO RecName: Full=RNA polymerase I-specific transcription initiation
factor rrn3
gi|1122375|emb|CAA92389.1| ribosomal DNA (rDNA) transcription factor Rrn3 [Schizosaccharomyces
pombe]
Length = 599
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 27/226 (11%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
C Y L+ A + + F+ L + + R S Y+ S + A +
Sbjct: 357 CRYTQFLIFWASQLDPEFTDIFLGVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKN 416
Query: 123 VIKTCLNEMSQWCHSYLDN--TDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL--VD 178
I+ +N M++W +YLD +L+D+ KH VFY++ Q++F + ++ L D
Sbjct: 417 TIQIIVNMMTRWVEAYLDQCENELSDDLLS---KHSVFYAINQSIFYIFCFRWRELCVSD 473
Query: 179 SKKNMK-----FLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQN 232
++M+ ++ L L R V+S+LNPLR C+ IV FA + N +Y Y++I QN
Sbjct: 474 ESESMEPRPNEWIPGLEILHRSVLSRLNPLRYCSPNIVLQFAKVANHLNFMYVYSIIEQN 533
Query: 233 ARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ I + + +D Y PF + L + I+ P
Sbjct: 534 RK-------------GIFR-EGFDTMDAYFPFDPYRLTKSSIIVQP 565
>gi|326430651|gb|EGD76221.1| hypothetical protein PTSG_00924 [Salpingoeca sp. ATCC 50818]
Length = 865
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 111/273 (40%), Gaps = 50/273 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF L+++F+ +L + +HV F+ FY
Sbjct: 335 LFEMLMSIFDEQVLMAYHTSHVQFIWFYA------------------------------- 363
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
AH+ + F++ K+ + I I +Q+ YV S + A+++ +
Sbjct: 364 -----------AHYGENQLARRFVQECMAKLGDPTIAVIVQQAAIAYVGSFVARANYLSL 412
Query: 122 RVIKTCLNEMSQWCHSYLDN--TDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS 179
+ + + E W +Y+D TD + +H FY++CQ+LF ++ ++ +D
Sbjct: 413 NFVASVIEECVDWAKAYIDRHRTDTPNVH-----RHTPFYALCQSLFYMLCFRVRDFMDE 467
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
++L+SL L +V LNPL +V FA Y+++ C + +N +V
Sbjct: 468 PDGHRWLKSLGLETIVRCSLNPLMVVTPAVVDEFARAMRAYEVMLCDVEVLRNRNASVGA 527
Query: 240 IVSTDALGNIIKLNT-VNALDQYSPFSTFLLVR 271
S + + + +N L+ + PF L R
Sbjct: 528 GTSAHIVAAVENGDLCLNDLEFFFPFDPIALPR 560
>gi|395329978|gb|EJF62363.1| RNA polymerase I-specific transcription initiation factor RRN3
[Dichomitus squalens LYAD-421 SS1]
Length = 789
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 124/296 (41%), Gaps = 60/296 (20%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFL-WKKIANVKIYNIFRQS 61
F+ LLA+F+ TIL T + F+VF++ SL + F L K + + R +
Sbjct: 449 FHTLLAIFDRTILRTFKSRYTQFVVFWYSSLDPEFADLFQGMLVSKALLEEDQPPVTRAA 508
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S + A F+ I+ L C+++ + L
Sbjct: 509 AASYIASFVSRAQFVDREGARRVIQVL-----------------CNFLRARL-------- 543
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ M+ L T + +H VFY+V QA+F + ++ L++ ++
Sbjct: 544 ----DVFDAMAAAVRQGLVGTSTMNV-----AQHSVFYAVAQAVFLIFCFRWRDLLEDQE 594
Query: 182 NM-----------KFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
+ K++ L+ + R+V S+LNPL+ C+ +V FA + + VYCY+++
Sbjct: 595 EVDEFAPQQGPPKKWMPELDVMQRVVTSELNPLKVCSPNVVMQFARVAHATGFVYCYSIM 654
Query: 230 HQNARLNVLPIVSTDALGN---------IIKLNTVNALDQYSPFSTFLLVRCKSII 276
N R + P +A G + + + + L+ + PF + L R S I
Sbjct: 655 EANRRSDYAP----NAEGGRPLPKPKAIVFEQSVTSELNAFFPFDPYKLPRSGSYI 706
>gi|68491456|ref|XP_710488.1| hypothetical protein CaO19.1923 [Candida albicans SC5314]
gi|68491495|ref|XP_710469.1| hypothetical protein CaO19.9479 [Candida albicans SC5314]
gi|46431674|gb|EAK91209.1| hypothetical protein CaO19.9479 [Candida albicans SC5314]
gi|46431695|gb|EAK91229.1| hypothetical protein CaO19.1923 [Candida albicans SC5314]
Length = 556
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 63/290 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN + ++F+S ILPTH + F++F+ + + ++++
Sbjct: 297 LFNTINSLFKSHILPTHFTKSIQFILFHITQFQPELADSYL------------------- 337
Query: 62 CCHYVSSLLIHAHFMPVSIGEN---FIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHF 118
LLI F P I E +++L IA K N+ R VS L
Sbjct: 338 ------VLLIDVAFNPSEILEKRLKAMQYLSSYIARAK--NLSRHQVIFIVSYL------ 383
Query: 119 MPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVD 178
V + + E Q S D++ + +FY+ QAL + ++H +L
Sbjct: 384 --VGWLNKFIIEREQEVESS------GDKQVGGMERFKLFYAAFQALLYIFCFRHELLST 435
Query: 179 SKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNA 233
++ + KF Q R ++++ NPL+ C+ +V FA + + YCY++I N
Sbjct: 436 TENDWECDLDKFFQ-----RAILTKFNPLKFCDETVVYIFAKLATKLNVCYCYSIIEHNK 490
Query: 234 R-----LNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
R N LP A+GN + L+ Y PF +L KSI+ P
Sbjct: 491 RERMLHTNALP----SAVGNFKQKQEFLDLEAYFPFDPLVLPISKSIVAP 536
>gi|17552532|ref|NP_497803.1| Protein C36E8.1 [Caenorhabditis elegans]
gi|1353129|sp|P48322.1|YPJ1_CAEEL RecName: Full=Uncharacterized protein C36E8.1
gi|3924707|emb|CAA84645.1| Protein C36E8.1 [Caenorhabditis elegans]
Length = 654
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 41/229 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF+ L EST+L + +V F+ YFCSL + +E LW+
Sbjct: 352 LFDTFLECLESTMLNATHVQYVSFIWLYFCSLSQEYEKKMLEHLWQ-------------- 397
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ I P ++ Q Y+++ L A ++
Sbjct: 398 -------VTIRMPRAPADARKS-------------------QGAASYLAAFLARAKYVKK 431
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV-KHPVFYSVCQALFSVITYKHSILVDSK 180
T L E+ W Y+D + + +H FYSV QA F V +++ V +K
Sbjct: 432 STAFTWLEEVYIWLRHYVDQFGSGSSQILPGLQRHGTFYSVSQAFFLVFAFRYKEFVKNK 491
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
++ ++ + R+V S L PL+ + + F++IT + Q+VYC ++I
Sbjct: 492 DMLETIRRWGVGRVVHSPLEPLKYVSKPVARCFSAITRSLQLVYCNHII 540
>gi|397466624|ref|XP_003805051.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3, partial [Pan paniscus]
Length = 298
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E F+E LWKK+ + I RQ+
Sbjct: 88 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQA 147
Query: 62 CCHYVSSLLIHAHFMPV 78
+Y+ S L A F+P+
Sbjct: 148 AGNYIGSFLARAKFIPL 164
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 220 YQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPE 279
YQ+V+CY +I +N R +LP++ + A G+ ++ T N LD + PF +L R K I P
Sbjct: 167 YQLVFCYTIIERNNR-QMLPVIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPI 224
Query: 280 IHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDDFLMS 320
D + Q P+ + ++DDFL
Sbjct: 225 YQVWED-----MSAEELQEF--KKPMKKDIVEDEDDDFLKG 258
>gi|302761060|ref|XP_002963952.1| hypothetical protein SELMODRAFT_405493 [Selaginella moellendorffii]
gi|300167681|gb|EFJ34285.1| hypothetical protein SELMODRAFT_405493 [Selaginella moellendorffii]
Length = 635
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 108/281 (38%), Gaps = 60/281 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
++ L+ F+ST+L T+ FL+FY CSL
Sbjct: 332 VYTTLMVSFKSTVLDTYKSKFTQFLIFYLCSLS--------------------------- 364
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
P S G NF FL + I + R S Y++S L A+F+P+
Sbjct: 365 ---------------PSSCGANFAGFLCETFVTRSIPSNTRMSAAAYLASYLARANFLPL 409
Query: 122 RVIKTCLNEMSQWCHSY----LDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV 177
V+ + ++ + WC S+ D LTD H VFY+ CQA+ ++ ++ L
Sbjct: 410 PVVLSSVSRLVNWCVSFTPTRFDVFKLTDT-----ALHGVFYAACQAVMYILCFRLRELY 464
Query: 178 DSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNV 237
L+ L L +L+ +L PL+ C +V F Q++ + ++ V
Sbjct: 465 AESTQRPLLKGLRLQQLIEHKLCPLKVCLPSVVEEFVRQATAIQLISYSGTVEPSSGFEV 524
Query: 238 LPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
L S N L+ + PF +LL R I P
Sbjct: 525 LSFKS---------YGGDNRLEMFFPFDPYLLRRSDRFIEP 556
>gi|71005704|ref|XP_757518.1| hypothetical protein UM01371.1 [Ustilago maydis 521]
gi|46096641|gb|EAK81874.1| hypothetical protein UM01371.1 [Ustilago maydis 521]
Length = 864
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 106/270 (39%), Gaps = 72/270 (26%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF+ LL++F ILPT HV FL+F+F SL + F+ L +K K ++ ++
Sbjct: 459 LFHTLLSIFARNILPTFRSRHVQFLLFWFNSLDPEFSDYFLGVLLEKSLYSKRVDMGQKD 518
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
P + R + YV+S + A ++
Sbjct: 519 --------------EPA---------------------VIRSAAAGYVASFVSRASYVDG 543
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK----HPVFYSVCQALFSVITYKHSIL- 176
+ L + + +++D + TD EA S H VFYSV QA F + ++ L
Sbjct: 544 PTTRVVLYNLCAFLDAHIDESSRTDTEAGSAAPGTGTHSVFYSVVQAAFYIFCFRWRDLK 603
Query: 177 -VDSKKNMKF------------------LQSLN-------------LTRLVMSQLNPLRS 204
D +++ + SL L R V S+LNPL+
Sbjct: 604 ITDEEQDGGADDLDYHDADEIGGGMHDSVGSLGQFGAEAWCDGLTSLQRAVTSRLNPLKY 663
Query: 205 CNAEIVSHFASITNTYQIVYCYNVIHQNAR 234
C+A +V FA I +YCY++I N R
Sbjct: 664 CSANVVKQFARIAQHTGFLYCYSIIEANNR 693
>gi|241952110|ref|XP_002418777.1| RNA polymerase I-specific transcription initiation factor, putative
[Candida dubliniensis CD36]
gi|223642116|emb|CAX44082.1| RNA polymerase I-specific transcription initiation factor, putative
[Candida dubliniensis CD36]
Length = 506
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 51/279 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN + ++F+S ILPTH + F++F+ + + ++F+
Sbjct: 253 LFNTITSLFKSHILPTHFTKSIQFILFHITQYQPELADSFL------------------- 293
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LLI F P E R Y+SS + A +
Sbjct: 294 ------VLLIDVAFNPAETLE------------------IRLKSIQYLSSYIARAKNLSS 329
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I ++ + W + ++ + + + +FYS QAL + ++H +L+ S
Sbjct: 330 HQITFIVSYLVGWLNKFIIERE-QEVHLGGMERFKLFYSTFQALLYIFCFRHELLITSTT 388
Query: 182 NM-KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
KF Q R ++++ NPL+ C+ +V FA + + YCY++I N R +L
Sbjct: 389 TTTKFFQ-----RAILTKFNPLKFCDETVVHIFAKLATRLNVCYCYSIIEHNKRERMLQT 443
Query: 241 VS-TDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
A+ N + L+ Y PF +L KSI+ P
Sbjct: 444 TGLPSAVANFKQKQEFLDLEAYFPFDPLVLPISKSIVAP 482
>gi|388851988|emb|CCF54344.1| related to RRN3-RNA polymerase I specific transcription factor
[Ustilago hordei]
Length = 828
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 76/289 (26%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF+ LL++F ILPT HV FL+F+F SL + F+ L +K
Sbjct: 424 LFHTLLSIFARNILPTFRSRHVQFLLFWFNSLDPEFSDYFLGVLLEK------------- 470
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
S+ +E+ K+ V R + YV+S + A ++
Sbjct: 471 -----------------SLYSRRVEYGEKEEPAV-----IRSAAAGYVASFVSRASYVDG 508
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV----KHPVFYSVCQALFSVITYKHSILV 177
+ L+ + + +++D + D EA S H VFYSV QA F + ++ L
Sbjct: 509 ATTRVVLHNLCAYLDAHIDESTRPDTEAGSAAPGSNAHSVFYSVVQAAFYIFCFRWRDLK 568
Query: 178 ----DSKKNMKFLQ----------------SLN-------------LTRLVMSQLNPLRS 204
D+ + L SL L R V +LNPL+
Sbjct: 569 ITNEDADGGVGDLDYQEADEIGGGMHDSVGSLGQFGAEAWCDGLTSLQRAVTCRLNPLKY 628
Query: 205 CNAEIVSHFASITNTYQIVYCYNVIHQNARL----NVLPIVSTDALGNI 249
C+A +V FA I +YCY++I N R P+ + +LG I
Sbjct: 629 CSANVVKQFARIAQHTGFLYCYSIIEANNRSVRGNRSNPVPRSTSLGRI 677
>gi|403413473|emb|CCM00173.1| predicted protein [Fibroporia radiculosa]
Length = 794
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 122/303 (40%), Gaps = 75/303 (24%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ LL++F+ TIL T + FLVF++ SL + F L
Sbjct: 440 FHTLLSLFDRTILRTFKSRYTQFLVFWYSSLDAEFSDLFQGML----------------- 482
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
VS L+ V+ R + Y++S + A F+
Sbjct: 483 ---VSKALLEEDQPAVT----------------------RAAAASYIASFVSRATFVDRE 517
Query: 123 VIKTCLNEMSQWCHSYLDNTD-LTDEEACSPV--KHPVFYSVCQALFSVITYKHSILVDS 179
+ + + + S LD D +TD A P H VFY+V QA+F + ++ L++
Sbjct: 518 SARRVVACLCNFLGSRLDILDAVTDAGAVPPSMSHHSVFYAVAQAVFLIFCFRWRDLLEE 577
Query: 180 KKNM-----------KFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYN 227
++ K++ L L R+VMS+LNPL+ C+ +V FA + + +YCY+
Sbjct: 578 HDDVDEFASASVPAKKWMTELEILQRVVMSELNPLKMCSINVVMQFARVAHATGFIYCYS 637
Query: 228 VIHQNARLNVL--------------PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCK 273
++ N R P+V LG+ I + L+ + PF + L R
Sbjct: 638 IMEANRRSEYAPQNASGGSQSGKRGPVVHPSMLGHSIN----SELNTFFPFDPYKLPRSG 693
Query: 274 SII 276
S I
Sbjct: 694 SYI 696
>gi|302769097|ref|XP_002967968.1| hypothetical protein SELMODRAFT_440149 [Selaginella moellendorffii]
gi|300164706|gb|EFJ31315.1| hypothetical protein SELMODRAFT_440149 [Selaginella moellendorffii]
Length = 637
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 108/281 (38%), Gaps = 60/281 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
++ L+ F+ST+L T+ FL+FY CSL
Sbjct: 332 VYTTLMVSFKSTVLDTYKSKFTQFLIFYLCSLS--------------------------- 364
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
P S G NF FL + I + R S Y++S L A+F+P+
Sbjct: 365 ---------------PSSCGVNFAGFLCETFVTRSIPSNTRMSAAAYLASYLARANFLPL 409
Query: 122 RVIKTCLNEMSQWCHSY----LDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV 177
V+ + ++ + WC S+ D LTD H VFY+ CQA+ ++ ++ L
Sbjct: 410 PVVLSSVSRLVNWCVSFTPTRFDVFKLTDT-----ALHGVFYAACQAVMYILCFRLRELH 464
Query: 178 DSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNV 237
L+ L L +L+ +L PL+ C +V F Q++ + ++ V
Sbjct: 465 ADSTQRPLLKGLRLQQLIEHKLCPLKVCLPSVVEEFVRQATAIQLISYSGTVEPSSGFEV 524
Query: 238 LPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
L S N L+ + PF +LL R I P
Sbjct: 525 LSFKS---------YGGDNRLEMFFPFDPYLLRRSDRFIEP 556
>gi|150863721|ref|XP_001382286.2| hypothetical protein PICST_75818 [Scheffersomyces stipitis CBS
6054]
gi|149384977|gb|ABN64257.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 613
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 120/289 (41%), Gaps = 49/289 (16%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
LFN + ++F S ILPTH + F++F+ + + ++F+
Sbjct: 316 ALFNTINSLFRSHILPTHFTKSIQFVIFHISQYQPELADSFL------------------ 357
Query: 61 SCCHYVSSLLIHAHFMPVSIGEN---FIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAH 117
LLI F P I E +++L IA K N+ R VS L+
Sbjct: 358 -------VLLIDVAFNPNEILEKRLKAMQYLSSYIARAK--NLSRHQVVFIVSYLI--GW 406
Query: 118 FMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV 177
+ + C E++ + S + A + +FY+ QAL + ++H +L
Sbjct: 407 LNKYIIEREC--EIADF-ESRNGARSNDGKSAGGMERFKLFYAAFQALLYIFCFRHQMLS 463
Query: 178 DSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQN 232
S KF+Q R+++++ NPL+ C+ +V FA I + YCY++I N
Sbjct: 464 SSDSEWECDLDKFIQ-----RVILAKFNPLKYCDETVVYIFAKIATKLNVCYCYSIIEHN 518
Query: 233 ARLNVLPI----VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIIT 277
R +L + A+GN + L+ Y PF +L K I++
Sbjct: 519 KRERMLQTNGQAIMPSAVGNFKQKQEFLDLEAYFPFDPLVLPSSKKIVS 567
>gi|300120588|emb|CBK20142.2| unnamed protein product [Blastocystis hominis]
Length = 305
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
VLF L FE I+ TH + FL+FY CS S E F+ L V Y
Sbjct: 136 VLFRILQKAFEKFIMLTHRSKYTQFLIFYVCSYDPSFVERFVGRL------VDWY----- 184
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
C S +L RQ+CC Y +S + A+F+
Sbjct: 185 --CSEESPVLT------------------------------RQTCCVYCASFICRANFIS 212
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP--VKHPVFYSVCQALFSVITYKHSILVD 178
+ +I++ L W + Y+D D+ E +P H VFYSV QA+ ++ +
Sbjct: 213 IDIIRSVLYFSLTWINKYIDMYDVQ-ENPLNPGDTGHLVFYSVMQAVCYILCFTSKRFEQ 271
Query: 179 SKKNMKFLQSLNLTRLVMSQLNPLRSCNAE 208
K ++FL+S + TR++ S L+PLR + E
Sbjct: 272 EKNGVQFLRSWDWTRILNSPLDPLRVGSVE 301
>gi|170090670|ref|XP_001876557.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Laccaria bicolor S238N-H82]
gi|164648050|gb|EDR12293.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 643
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 124/296 (41%), Gaps = 71/296 (23%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+ F+ LL++F+ TIL T + FLVF++ SL + + +IF+
Sbjct: 330 IQFHSLLSIFDRTILRTFKSRYTQFLVFWYTSL-----------------DPEFADIFQ- 371
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
+L+ F P + + R + Y+ S + A F+
Sbjct: 372 -------GMLVDRAFSPTTP------------------ELTRAAAASYIGSFVSRATFVD 406
Query: 121 VRVIKTCLNEMSQWCHSYLDNTD----LTDEEACSPVKHPVFYSVCQALFSVITYK-HSI 175
+ + + ++ ++LD + L ++ +H VFY+V QA+F + ++ +
Sbjct: 407 GDGARRVVAVLCEYLQAHLDGVEEAIKLHGDDWVGGAQHAVFYAVAQAVFLIFCFRWRDL 466
Query: 176 LVD--------------SKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTY 220
L D S KN K++ L+ L R+V+S LNPL+ C+ +V FA + +
Sbjct: 467 LQDADVDDEVGLRSSNVSGKN-KWIPELSVLKRVVISVLNPLKVCSPNVVMQFARVAHHT 525
Query: 221 QIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
+YCY ++ N R P + +I NT L+ + PF + L R I
Sbjct: 526 DFIYCYTILESNKRSEYGP-----SPNSIPNSNTT--LNTFFPFDPYRLPRSNVFI 574
>gi|320582691|gb|EFW96908.1| RNA polymerase I-specific transcription initiation factor, putative
[Ogataea parapolymorpha DL-1]
Length = 523
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 105/277 (37%), Gaps = 44/277 (15%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
LFN L +F+S +LPTH + +L+FY + ++F+ L + NV
Sbjct: 274 ALFNTLATLFKSHVLPTHYTRCIQYLMFYVAQQHPDLTDSFLVMLIDIVFNVN------- 326
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
IG N R YVSS + A +
Sbjct: 327 ------------------EIGSN------------------RVKAMQYVSSFIARAKSLS 350
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKH-PVFYSVCQALFSVITYKHSILVDS 179
+ + + ++ WC ++ + ++ + Y V Q L + ++H L +
Sbjct: 351 KQQLVFVIKYLTSWCSVFVAERENEISNGHGGMERFKILYCVFQGLLYIFCFRHRELKND 410
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K + +L++S NPL+ CN +V FA + + YC+++I +N R +
Sbjct: 411 KDEWELNLDKFFNKLIISGFNPLKYCNETVVLIFARLAQQVDLCYCFSIIERNKRERLNG 470
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
I + A L+ Y PF +L R K ++
Sbjct: 471 IKNMQAGSVFESKQEFLDLEAYFPFDPLILKRSKELV 507
>gi|449549620|gb|EMD40585.1| hypothetical protein CERSUDRAFT_111179 [Ceriporiopsis subvermispora
B]
Length = 738
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 57/247 (23%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
FN LL++F+ TIL T + FLVF++ SL + F L K
Sbjct: 401 FNTLLSIFDRTILRTFKSRYTQFLVFWYSSLDPEFSDLFQGMLVSK-------------- 446
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
SLL P + R + Y++S + A F+
Sbjct: 447 -----SLLEEDQ--PA---------------------VTRAAAASYIASFVSRAQFVDRD 478
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILVDS 179
+ + + + + LD D + +P H VFY+V QA+F + ++ L++
Sbjct: 479 STRQVVACLCNFLRNRLDIFDAVIKAGATPPSMAHHSVFYAVAQAVFLIFCFRWRDLLED 538
Query: 180 KKNM-----------KFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYN 227
++ + K++ L+ + R++ S+LNPL+ C+A +V FA + + +YCY+
Sbjct: 539 QEEVDEYATHGTPSKKWMGELDVIQRMITSELNPLKVCSANVVMQFARVAHATDFIYCYS 598
Query: 228 VIHQNAR 234
++ N R
Sbjct: 599 IMEANKR 605
>gi|149248526|ref|XP_001528650.1| hypothetical protein LELG_01170 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448604|gb|EDK42992.1| hypothetical protein LELG_01170 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 600
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 124/303 (40%), Gaps = 61/303 (20%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
LFN + ++F+S ILPTH + FL+F+ + + ++F+
Sbjct: 264 TLFNTINSLFKSHILPTHFTKLIQFLLFHITQFQPELADSFL------------------ 305
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFI---EFLWKKIANVKIYNIFRQSCCHYVSSLL--IH 115
LLI F P I E + ++L IA K N+ R VS L+ I+
Sbjct: 306 -------VLLIDVAFNPSEILEKRLKAMQYLSSYIARAK--NLSRHQIVFIVSYLMGWIN 356
Query: 116 AHFMPVR----VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITY 171
+ M + N+ + + NT+ + ++ + +FYS QAL + +
Sbjct: 357 KYIMEREQEALEFQNNKNKTTSRNDNRNHNTNQSQQQTGGMERFKLFYSAFQALLYIFCF 416
Query: 172 KHSILVDSKKNM--------------KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASIT 217
+H L K+N KF Q R+++++ NPL+ C+ +V FA +
Sbjct: 417 RHETL--RKQNTAVGPSNSEWECEIDKFFQ-----RVIIAKFNPLKFCDETVVYIFAKLA 469
Query: 218 NTYQIVYCYNVIHQNARLNVLPIVST----DALGNIIKLNTVNALDQYSPFSTFLLVRCK 273
+ YCY++I N R +L T A+ N + L+ Y PF +L K
Sbjct: 470 TKLNVCYCYSIIEHNKRERILQTNGTLAMPSAVANFKQKQEFLDLEAYFPFDPLVLPLSK 529
Query: 274 SII 276
I+
Sbjct: 530 RIV 532
>gi|336373654|gb|EGO01992.1| hypothetical protein SERLA73DRAFT_159088 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386470|gb|EGO27616.1| hypothetical protein SERLADRAFT_413954 [Serpula lacrymans var.
lacrymans S7.9]
Length = 776
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 57/289 (19%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ LL++F+ TI+ T + FL+F++ SL + F L +K
Sbjct: 434 FHTLLSIFDRTIIRTFKSRYTQFLIFWYSSLDPEFSDLFQGMLVEK-------------- 479
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+LL P + R + Y++S + A F+
Sbjct: 480 -----ALLTQDQ--PA---------------------VTRAAAASYIASFVSRAQFVDRD 511
Query: 123 VIKTCLNEMSQWCHSYLDNTDL---TDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS 179
+ ++ + + S+LD D+ T +E S H VFY+V QA+F + ++ L +
Sbjct: 512 GTRRVMSVLCTFLQSHLDAFDVILQTGQELPSVAHHSVFYAVTQAVFLIFCFRWRDLQED 571
Query: 180 KKNM-----------KFLQSLNL-TRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYN 227
+ ++ K++ L++ R++ S LNPL+ C++ +V FA + YCY+
Sbjct: 572 EGDVDESLGTASSGKKWMPELSIVQRVLTSLLNPLKVCSSNVVMQFARVAQATDFAYCYS 631
Query: 228 VIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
++ N R + P + I + L+ + PF + L + I
Sbjct: 632 ILEVNKRSDYNPTPGQRSRATIDGESLNAELNTFFPFDPYRLPKSSPYI 680
>gi|242221356|ref|XP_002476428.1| predicted protein [Postia placenta Mad-698-R]
gi|220724312|gb|EED78364.1| predicted protein [Postia placenta Mad-698-R]
Length = 723
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 102/252 (40%), Gaps = 57/252 (22%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ LL++F+ TIL T + FLVF++ SL + F L
Sbjct: 493 FHALLSIFDRTILRTFKSRYTQFLVFWYSSLDPEFSDLFQGML----------------- 535
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
VS L+ V+ R + Y++S + A F+
Sbjct: 536 ---VSKSLLEEDQPAVT----------------------RAAAASYIASFVSRAQFVDRE 570
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILVDS 179
+ + + + + LD D +P H VFY+V QA+F + ++ L++
Sbjct: 571 STRRVVACLCNFLRNRLDILDAVTNAGATPPSMAHHSVFYAVAQAVFLIFCFRWRDLLED 630
Query: 180 KKNM-----------KFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYN 227
+ ++ K++ L L R+V S+LNPL+ C+A +V FA + +YCY+
Sbjct: 631 QDDVDEFAAAAAPAKKWMVELQILQRVVTSELNPLKICSANVVMQFARVAQATDFIYCYS 690
Query: 228 VIHQNARLNVLP 239
++ N R P
Sbjct: 691 IMESNRRSEYAP 702
>gi|409079536|gb|EKM79897.1| hypothetical protein AGABI1DRAFT_119954 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 840
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 108/266 (40%), Gaps = 47/266 (17%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+ FN LL++F+ IL T + FL+F++ SL + F L + R
Sbjct: 443 IQFNALLSIFDRVILRTFKSRYTQFLIFWYTSLDPEFADIFQGML-----------VERA 491
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
++ + + F G + + + R + Y+ S + A F+
Sbjct: 492 LLGTSATTTQLQSEFQEGEGGPS------NDASGAHGSTVARAAAASYIGSFVSRALFVD 545
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV-----KHPVFYSVCQALFSVITYKHSI 175
+ + + ++ ++LD+ + + S + +H VFY+V QA+F + ++
Sbjct: 546 GESTRRVVALLCEFLMAHLDDVEESMRAQTSTLNIGGPQHTVFYAVSQAVFLIFCFRWRD 605
Query: 176 LVD------------------------SKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIV 210
L+D ++ K++ L L R+V S LNPLR C++ +V
Sbjct: 606 LLDLEEEDGEFNVVGATTDMRQNEGTRGERPRKWMPELAILQRVVNSVLNPLRVCSSNVV 665
Query: 211 SHFASITNTYQIVYCYNVIHQNARLN 236
FA + +YCY ++ N RL
Sbjct: 666 MQFARVAQATDFIYCYTILESNKRLE 691
>gi|426192512|gb|EKV42448.1| hypothetical protein AGABI2DRAFT_188606 [Agaricus bisporus var.
bisporus H97]
Length = 861
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 108/266 (40%), Gaps = 47/266 (17%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+ FN LL++F+ IL T + FL+F++ SL + F L + R
Sbjct: 462 IQFNALLSIFDRVILRTFKSRYTQFLIFWYTSLDPEFADIFQGML-----------VERA 510
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
++ + + F G + + + R + Y+ S + A F+
Sbjct: 511 LLGTSATTTQLQSEFQEGEGGPS------NDASGAHGSTVARAAAASYIGSFVSRALFVD 564
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV-----KHPVFYSVCQALFSVITYKHSI 175
+ + + ++ ++LD+ + + S + +H VFY+V QA+F + ++
Sbjct: 565 GESTRRVVALLCEFLMAHLDDVEESMRTQTSALNIGGPQHTVFYAVSQAVFLIFCFRWRD 624
Query: 176 LVD------------------------SKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIV 210
L+D ++ K++ L L R+V S LNPLR C++ +V
Sbjct: 625 LLDLEEEDGEFNVVGAATDLRQNEGTRGERPRKWMPELAILQRVVNSVLNPLRVCSSNVV 684
Query: 211 SHFASITNTYQIVYCYNVIHQNARLN 236
FA + +YCY ++ N RL
Sbjct: 685 MQFARVAQATDFIYCYTILESNKRLE 710
>gi|406694432|gb|EKC97759.1| RNA polymerase I transcription factor [Trichosporon asahii var.
asahii CBS 8904]
Length = 813
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 50/255 (19%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL +F ILPT H+PF++F S + E F+ L QS
Sbjct: 439 FQTLLNLFSRQILPTSATQHLPFVIFMCSSFSPAHTELFLHLL------------VLQSL 486
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
S A PVS+ + R + Y+ SL+ A F+
Sbjct: 487 YARTSDQPTLAS-QPVSLSQ-------------------RVAATVYIGSLVCRARFVSDE 526
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK---------- 172
+T + + +Y+D + + + P+FY+VCQA + ++
Sbjct: 527 QARTVMG----YLLAYVDGKLHSARAKKNDPELPLFYAVCQAAMLIFCFRWRAFTNQDDM 582
Query: 173 ---HSILVDSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
+ +D + +++ L+ L R + S+LNPL CN IVS FA + N YC+++
Sbjct: 583 EVTGEMDMDEAQGGQWIADLDVLQRAITSELNPLLGCNPNIVSTFAKVANATNFAYCFSI 642
Query: 229 IHQNARLNVLPIVST 243
I N + +P S+
Sbjct: 643 IEANQNAHRVPTSSS 657
>gi|401884874|gb|EJT49012.1| RNA polymerase I transcription factor [Trichosporon asahii var.
asahii CBS 2479]
Length = 813
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 50/255 (19%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL +F ILPT H+PF++F S + E F+ L QS
Sbjct: 439 FQTLLNLFSRQILPTSATQHLPFVIFMCSSFSPAHTELFLHLL------------VLQSL 486
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
S A PVS+ + R + Y+ SL+ A F+
Sbjct: 487 YARTSDQPTLAS-QPVSLSQ-------------------RVAATVYIGSLVCRARFVSDE 526
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK---------- 172
+T + + +Y+D + + + P+FY+VCQA + ++
Sbjct: 527 QARTVMG----YLLAYVDGKLHSARAKKNDPELPLFYAVCQAAMLIFCFRWRAFTNQDDM 582
Query: 173 ---HSILVDSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
+ +D + +++ L+ L R + S+LNPL CN IVS FA + N YC+++
Sbjct: 583 EVTGEMDMDEAQGGQWIADLDVLQRAITSELNPLLGCNPNIVSTFAKVANATNFAYCFSI 642
Query: 229 IHQNARLNVLPIVST 243
I N + +P S+
Sbjct: 643 IEANQNAHRVPTSSS 657
>gi|168037110|ref|XP_001771048.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677736|gb|EDQ64203.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 624
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 107/282 (37%), Gaps = 56/282 (19%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
++F L+ F++TIL T+ FL+FY CSL
Sbjct: 255 LVFETLMRSFQTTILDTYKSKFTQFLIFYLCSL--------------------------- 287
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
P + G F L + R S Y++S L A ++P
Sbjct: 288 ---------------APSTCGNTFASLLCDIFESKTRPPNTRMSAAAYLASYLARAGYLP 332
Query: 121 VRVIKTCLNEMSQWCHSYL----DNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
+ V+ + + WC SY D + T A PV H VFY CQA+ V+ ++ L
Sbjct: 333 LTVVVESVRRLLDWCVSYAQLAQDRRNPTMTTA-DPVLHGVFYCACQAVMYVLCFRLKDL 391
Query: 177 VDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLN 236
+ ++ + L++L L LV L PL+ C +V F + Q+V C N R +
Sbjct: 392 TEDQRLKRVLRTLPLQELVEHHLKPLKVCLPSVVDEFVKQASIAQLVDCRQ--WSNTR-D 448
Query: 237 VLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ S + G LD + PF +LL I P
Sbjct: 449 ATAVQSAGSFGG------EGRLDMFFPFDPYLLRESDRFIRP 484
>gi|344233955|gb|EGV65825.1| hypothetical protein CANTEDRAFT_118584 [Candida tenuis ATCC 10573]
Length = 661
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 120/296 (40%), Gaps = 64/296 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN L ++F S ILPTH + FL+F+ ++ + ++F+
Sbjct: 354 LFNTLSSLFRSHILPTHFTKSIQFLLFHITQYQMELSDSFL------------------- 394
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LLI F P I E R Y+SS + A +
Sbjct: 395 ------VLLIDITFNPSQILET------------------RLKSMQYLSSYIARAKCLSK 430
Query: 122 RVIKTCLNEMSQWCHSYLDNTDL-------TDEEACSPVKHPVFYSVCQALFSVITYKHS 174
I ++ + W + Y++ + D+ + +FYS Q L + +++
Sbjct: 431 NQIVFVVSYLVGWLNKYIEEREFEINLSNSNDKSVGGMERFKLFYSTFQGLLYIFCFRYK 490
Query: 175 IL-VDSKKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQ 231
+L V+ K + ++ ++ R+++++ NPL+ + + FA+I + YCY++I
Sbjct: 491 LLQVEIKGDFEWEGEIDKFFQRVIITKFNPLKFIDETVCFIFANIATKLNVCYCYSIIEH 550
Query: 232 NARLNVLPIVSTD----------ALGNIIKLNTVNALDQYSPFSTFLLVRCKSIIT 277
N R +L STD ++GN + L+ Y PF +L K +IT
Sbjct: 551 NKRERMLH-TSTDTKDNNLSLPASIGNFKQKQEFLDLEGYFPFDPLVLPLSKKLIT 605
>gi|392568468|gb|EIW61642.1| RNA polymerase I-specific transcription initiation factor RRN3
[Trametes versicolor FP-101664 SS1]
Length = 785
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 60/296 (20%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFL-WKKIANVKIYNIFRQS 61
FN LL++F+ TIL T + F+VF++ SL + F L K + + R +
Sbjct: 441 FNTLLSIFDRTILRTFKSRYTQFIVFWYSSLDPEFADLFQGMLVSKSLLEEDQPAVTRAA 500
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S + A F+ + L C ++ + L FM
Sbjct: 501 AASYIASFVSRAQFVDRDGARRVVAVL-----------------CDFLRARL--DMFM-- 539
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
Q H ++ +H VFY+V QA+F + ++ L++
Sbjct: 540 ----AAAKAGVQGMHMHV-------------AQHSVFYAVAQAVFLIFCFRWRDLLEDVD 582
Query: 182 NM-----------KFLQSLNL-TRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
+ K++ L++ R+V S+LNPL+ C+ +V FA + + +YCY+++
Sbjct: 583 EVDEFAPAQGPPKKWMPGLDVVERVVASELNPLKVCSTNVVMQFARVAHATGFIYCYSIM 642
Query: 230 HQNARLNVLP----IVSTDALGNIIKL-----NTVNALDQYSPFSTFLLVRCKSII 276
N R P + A G + K + L+ + PF + L R S I
Sbjct: 643 EANRRSEYAPSTPGAANGAASGRLPKGLRFEHSMTAELNTFFPFDPYKLPRSGSYI 698
>gi|50304297|ref|XP_452098.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641230|emb|CAH02491.1| KLLA0B12738p [Kluyveromyces lactis]
Length = 658
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 66/292 (22%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+FN L ++F++ ILPT+ V +L+F+ + + + F+
Sbjct: 388 TIFNTLTSLFKTHILPTYYTRSVQYLMFHVSQQQPELMDAFL------------------ 429
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
LI F P E + KKI +++ Y+ S + A +
Sbjct: 430 -------VTLIDISFSPN-------ETMEKKIKSLQ-----------YIGSFIARAKKLT 464
Query: 121 VRVIKTCLNEMSQWCHSY-LDNTDLTDEEAC-SPVKHPVFYSVCQALFSVITYKHSILVD 178
I + ++ W + Y L+ + D++ KH FY+V QA+ + ++HSIL D
Sbjct: 465 RTQIVFVTSYLTSWLNRYVLEREEEVDQQGGMERFKH--FYAVFQAICYIFCFRHSILRD 522
Query: 179 SKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI--HQ 231
KF Q R+V+S+ NPL+ CN ++ FA I +VYC+++I +
Sbjct: 523 GNDAWECDLDKFFQ-----RMVISKFNPLKYCNGNVMMMFAKIAQNEGVVYCFSIIENNN 577
Query: 232 NARLNVLPIVSTDALGNIIKLNTVNA-------LDQYSPFSTFLLVRCKSII 276
N RL + S ++ G+ I A L Y P+ L KS++
Sbjct: 578 NERLRGITGKSAESGGSSISGTWSLATRQQFIDLQSYFPYDPLFLTNYKSMM 629
>gi|406605414|emb|CCH43213.1| RNA polymerase I-specific transcription initiation factor RRN3
[Wickerhamomyces ciferrii]
Length = 635
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 115/280 (41%), Gaps = 49/280 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
++N L ++F+S ILPT+ F++FYF + ++F+
Sbjct: 353 IYNTLTSLFKSHILPTYYTKSTQFIIFYFTQRAPELMDSFL------------------- 393
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F P E I+ L Y+SS + A+ +
Sbjct: 394 ------VTLIDLCFSPEETIEKRIKSL------------------QYLSSYISRANHLQK 429
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ L+ + W + Y++ ++ + + + +FYS Q L + ++HSIL +
Sbjct: 430 HQLMFVLSFLMSWLNKYVEEREIEISGSINMERFKLFYSTFQVLLYIFCFRHSILKNDDD 489
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI- 240
+ R+++++ NPL+ CN +V FA I + YC+++I +N + I
Sbjct: 490 EWELGLDKFFQRILITKFNPLKFCNENVVLMFAKIAQQENVAYCFSIIQKNKNEKLKGIS 549
Query: 241 ----VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
+T++ ++ K V+ L+ Y PF L K +
Sbjct: 550 GSNSTNTNSNQSLSKQQFVD-LEGYFPFDPLFLKNSKKFL 588
>gi|154324210|ref|XP_001561419.1| hypothetical protein BC1G_00504 [Botryotinia fuckeliana B05.10]
Length = 675
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 120/313 (38%), Gaps = 76/313 (24%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F LL F + ILPT+ H FL+F+F Q
Sbjct: 375 MFETLLGHFANIILPTYRSRHTQFLLFHFA----------------------------QK 406
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
H + + IG + RQS Y++S + +
Sbjct: 407 SDHLIDQFAGTCVQLAFQIGRP---------------AVLRQSSAAYLASFVARGAHVEP 451
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILVD 178
+V++T + S LD+ + +E C K+ FY++ QAL + ++ L+D
Sbjct: 452 QVVRTVF----ELIGSNLDHIRMENELTCRGPDLKKYGTFYAMTQALLYIFCFRWRDLID 507
Query: 179 S------KKNMKFL-QSL--------NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
S + F+ Q L L+R + S+LNPL+ C+ IVS FA I + + +
Sbjct: 508 SSEVFDDEDPTAFIGQDLVWTPGIKETLSRAIYSKLNPLKICSPPIVSEFAKIAHHLRFI 567
Query: 224 YCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNA--------LDQYSPFSTFLLVRCKSI 275
Y Y ++ N R+ + S A GN ++ N LD Y PF + L K
Sbjct: 568 YVYPLLETNKRIRLSQFSS--AAGNGALRDSGNGASNDSWHQLDAYFPFDPYQLPVSKKW 625
Query: 276 ITPEIHCQADPIP 288
I + + Q IP
Sbjct: 626 IEDD-YVQWQGIP 637
>gi|156057381|ref|XP_001594614.1| hypothetical protein SS1G_04421 [Sclerotinia sclerotiorum 1980]
gi|154702207|gb|EDO01946.1| hypothetical protein SS1G_04421 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 584
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 72/311 (23%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F LL F + ILPT+ H FL+F+F E+ I + F +
Sbjct: 282 MFETLLGHFANIILPTYRSRHTQFLLFHFAQK----SEHLI-------------DQFAGT 324
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C + F P + RQS Y++S + +
Sbjct: 325 C--------VQLAFQPGRPA------------------VLRQSSAAYLASFVARGAHVEP 358
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILVD 178
+V++T + S LD+ +E C K+ FY++ QAL + ++ L+D
Sbjct: 359 QVVRTVF----ELIGSNLDHIRTENELNCRGPDLKKYGTFYAMTQALLYIFCFRWRDLID 414
Query: 179 S-------------KKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
S +++ + + L+R + S+LNPL+ C+ IVS FA I + + +
Sbjct: 415 SSEVFDDEDPAAFIGQDLVWTAGIKETLSRAIYSKLNPLKICSPPIVSEFAKIAHHLRFM 474
Query: 224 YCYNVIHQNARLNVLPI---VSTDAL---GNIIKLNTVNALDQYSPFSTFLLVRCKSIIT 277
Y Y+++ N R+ + V AL GN ++ + LD Y PF + L K I
Sbjct: 475 YVYSLLETNKRIRLSQFSSAVGNGALRDSGNGASNDSWHQLDAYFPFDPYQLPVSKKWIE 534
Query: 278 PEIHCQADPIP 288
+ + Q IP
Sbjct: 535 ND-YVQWQGIP 544
>gi|347829777|emb|CCD45474.1| similar to RNA polymerase I-specific transcription initiation
factor rrn3 [Botryotinia fuckeliana]
Length = 675
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 120/313 (38%), Gaps = 76/313 (24%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F LL F + ILPT+ H FL+F+F Q
Sbjct: 375 MFETLLGHFANIILPTYRSRHTQFLLFHFA----------------------------QK 406
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
H + + IG + RQS Y++S + +
Sbjct: 407 SDHLIDQFAGTCVQLAFQIGRP---------------AVLRQSSAAYLASFVARGAHVEP 451
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILVD 178
+V++T + S LD+ + +E C K+ FY++ QAL + ++ L+D
Sbjct: 452 QVVRTVF----ELIGSNLDHIRMENELTCRGPDLKKYGTFYAMTQALLYIFCFRWRDLID 507
Query: 179 S------KKNMKFL-QSL--------NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
S + F+ Q L L+R + S+LNPL+ C+ IVS FA I + + +
Sbjct: 508 SSEVFDDEDPTAFIGQDLVWTPGIKETLSRAIYSKLNPLKICSPPIVSEFAKIAHHLRFI 567
Query: 224 YCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNA--------LDQYSPFSTFLLVRCKSI 275
Y Y ++ N R+ + S A GN ++ N LD Y PF + L K
Sbjct: 568 YVYPLLETNKRIRLSQFSS--AAGNGALRDSGNGASNDSWHQLDAYFPFDPYQLPVSKKW 625
Query: 276 ITPEIHCQADPIP 288
I + + Q IP
Sbjct: 626 IEDD-YVQWQGIP 637
>gi|443897217|dbj|GAC74558.1| RNA polymerase I transcription factor [Pseudozyma antarctica T-34]
Length = 815
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 126/333 (37%), Gaps = 76/333 (22%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF+ +L++F ILPT HV FL+F+F SL + F+ L +K
Sbjct: 420 LFHTMLSIFARNILPTFRSRHVQFLLFWFNSLDAEFSDYFLGVLLEK------------- 466
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y + + P + R + YV+S + A ++
Sbjct: 467 -SLYSRRVALSDKEEPA---------------------VIRSAAAGYVASFVSRASYVDG 504
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK----HPVFYSVCQALFSVITYK----- 172
+ L + + +++D + +D EA + H VFYSV QA F + ++
Sbjct: 505 ATTRVVLYNLCAFMDAHIDESSRSDTEAGAAPPGASAHAVFYSVVQAAFYIFCFRWRELK 564
Query: 173 --HSILVDSKKNMKFLQS--------------------------LNLTRLVMSQLNPLRS 204
H +M + + +L R V S+LNPL+
Sbjct: 565 ISHDEHEGGVGDMDYQDADEIGGGMHSSVGSLAQLGAESWCDGLTSLQRAVTSRLNPLKY 624
Query: 205 CNAEIVSHFASITNTYQIVYCYNVI---HQNARLNVL-PIVSTDALGNIIKLNTVNALDQ 260
C+A +V FA I +YCY++I H++ R N P+ + +L + ++ +A
Sbjct: 625 CSANVVKQFARIAQHTGFLYCYSIIEANHRSVRSNRSNPVSRSTSLNRLQLESSGSATPM 684
Query: 261 YSPFSTFLLVRCKSIITPEIHCQADPIPVTTNT 293
S R + +P+ + VTT +
Sbjct: 685 SQDGSERGTPRPEGASSPQKEAKRAAASVTTAS 717
>gi|168045135|ref|XP_001775034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673621|gb|EDQ60141.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 120/323 (37%), Gaps = 66/323 (20%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
++F L+ F++TIL T+ FL+FY CSL
Sbjct: 289 LVFETLMRSFQTTILDTYKSKFTQFLIFYLCSL--------------------------- 321
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
P + G F L R S Y++S L A ++P
Sbjct: 322 ---------------APETCGSTFASLLCDIFECKTRPPNTRMSAAAYLASYLARAAYLP 366
Query: 121 VRVIKTCLNEMSQWCHSYLD------NTDLTDEEACSPVKHPVFYSVCQALFSVITYKHS 174
+ V+ + + WC SY N +T + PV H VFY CQA+ V+ ++
Sbjct: 367 LNVVMDSVRRLLHWCVSYAQLAEDRRNPTMT---SVDPVLHGVFYCACQAVMYVLCFRLK 423
Query: 175 ILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR 234
L + ++ + L++L L LV L PL C +V F + Q+V C
Sbjct: 424 DLTEDQRLKRLLRNLPLQELVEHHLKPLTICLPSVVDEFVKQASIAQLVDCRQWS----- 478
Query: 235 LNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPE-IHCQADPIP----- 288
N+ ++ A G+ LD + PF +LL + I P IH +P
Sbjct: 479 -NIRDAAASQACGS---FGGEGRLDMFFPFDPYLLRQSDRFIRPHFIHWAMVELPELYEE 534
Query: 289 VTTNTNRTQNLLIADPVSSKQAD 311
+ + N ++P SS + D
Sbjct: 535 FSEEDDDFVNQTFSEPTSSWEDD 557
>gi|255566898|ref|XP_002524432.1| transcription initiation factor ia, putative [Ricinus communis]
gi|223536316|gb|EEF37967.1| transcription initiation factor ia, putative [Ricinus communis]
Length = 640
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 108/279 (38%), Gaps = 59/279 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLR-LSIGENFIEFLWKKIANVKIYNIFRQ 60
+F LL F TIL T+ F++FY C+L + G F E L +
Sbjct: 326 VFETLLDSFMLTILNTYKSKFAQFVMFYACALDPENCGVEFAERLRDRF----------- 374
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
+ GEN + R S Y++S L A F+P
Sbjct: 375 ------------------TYGEN---------------PLTRMSAVAYLASYLARAKFLP 401
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
+ + + L + WC Y N D +P H VFYS CQA+ V+ ++ S ++D
Sbjct: 402 IAFVASTLKRLVDWCSEYCRNQD----GDMNPKAHRVFYSGCQAILYVLCFRMSSMMDIP 457
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
L + L +++ +L PL+ C IV F + + + ++ +VL
Sbjct: 458 WLKSQLLHMPLEQIMKHKLGPLKVCLPSIVEEF---LKQAKAAHLFTTSQTSSFEDVLES 514
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRC-KSIITP 278
+ G + + LD + PF LL C +S I P
Sbjct: 515 EFSKDFGGLER------LDMFFPFDPCLLRTCDRSFIRP 547
>gi|345566690|gb|EGX49632.1| hypothetical protein AOL_s00078g121 [Arthrobotrys oligospora ATCC
24927]
Length = 667
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 111 SLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP--VKHPVFYSVCQALFSV 168
S + A + +++ + + W YL + ++ E SP K FY+V QA+ +
Sbjct: 433 SFVARAKLLERDAVRSVVRMLCLWLEKYLKDREV---ECTSPNVRKFGGFYAVFQAVMYI 489
Query: 169 ITYK---------------HSILVDSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSH 212
++ SI S+ + L + RL+ S+ NPL+ C+ +V+
Sbjct: 490 FCFRWRDLRGKTPLPVGEDESIEDISRSPQSWAPGLQVIDRLLTSRFNPLKVCSQNVVTQ 549
Query: 213 FASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRC 272
FA + + + + YCY++I +N R N+ + G+ +L L+ Y PF F L
Sbjct: 550 FAEVASHFGVFYCYSIIERNKRGNLF-----SSRGSSTELPEATQLETYFPFDPFKLSHS 604
Query: 273 KSIITPEIHCQADPIP 288
K + P + Q +P+P
Sbjct: 605 KIWVEP-YYQQWEPVP 619
>gi|409049799|gb|EKM59276.1| hypothetical protein PHACADRAFT_25394 [Phanerochaete carnosa
HHB-10118-sp]
Length = 746
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 116/298 (38%), Gaps = 70/298 (23%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL++FE TIL T + FLVF+F SL + F L
Sbjct: 410 FFSLLSIFERTILRTFKSRYTQFLVFWFSSLDPEFSDLFQGML----------------- 452
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
VS L+ V+ R + Y++S + A F+
Sbjct: 453 ---VSKALLEEDQPTVT----------------------RAAAASYIASFVSRAVFVNRE 487
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILVDS 179
+ + + + ++ LD D + +P +H +FY+V QA+F + ++ LV
Sbjct: 488 STRQVVACLCNFLNNRLDILDAIAQTGTNPPSLAQHSMFYAVTQAVFLIFCFRWRDLVQD 547
Query: 180 KKNM------------KFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
+ + K++ L L R+V S LNPLR C +V FA + + +YCY
Sbjct: 548 QDELDELAGAAGGAHGKWMLELEVLKRVVQSDLNPLRICAPTVVMQFARVAHATDFLYCY 607
Query: 227 NVIHQNARLN--------VLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
++I N R V V+ LG ++ L+ + PF + L R + I
Sbjct: 608 SIIEANRRSEYASPNTQAVRRFVNPTVLGESVQ----TELNTFFPFDPYKLPRSGTYI 661
>gi|190348382|gb|EDK40826.2| hypothetical protein PGUG_04924 [Meyerozyma guilliermondii ATCC
6260]
Length = 650
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 58/330 (17%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+FN L +F++ ILPTH FL+F+ + + + F+
Sbjct: 365 TIFNSLSKLFQTHILPTHFTKSTQFLLFHISQSKAELSDAFL------------------ 406
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
M + I E + K+I Y+SS + A +
Sbjct: 407 --------------VMLIDIAFKVDEMVEKRI-----------KAMQYLSSYIARAKSLS 441
Query: 121 VRVIKTCLNEMSQWCHSYLDN-----TDLTDEEACSPV-----KHPVFYSVCQALFSVIT 170
+ ++ + +W + Y+ +D D + S + +FY+ Q L V
Sbjct: 442 RDQVVFVVSYLMEWLNRYVQERECEISDYEDNKTGSKSVGGMERFKLFYAAFQVLIYVFC 501
Query: 171 YKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIH 230
++H +L++S + R+++++ NPL+ C+ +V FA I + YCY++I
Sbjct: 502 FRHQMLLNSSGEWECEIDQFFQRVIVTKFNPLKYCDETVVFIFAKIATKMNVCYCYSIIE 561
Query: 231 QNARLNVLPIVSTD----ALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADP 286
N R +L + A+ N L+ Y PF +L K II+ A+
Sbjct: 562 HNKRERMLSTRGKNNLPSAVYNFKSKQEFLDLEAYFPFDPIVLPNSKEIISANYIEWAEV 621
Query: 287 IPVTTNTNRTQNLLIADPVSSKQADHDEDD 316
P T + N + + S + +EDD
Sbjct: 622 NP-TEDDNEDEESGSYEQDSDESITSEEDD 650
>gi|365759747|gb|EHN01521.1| Rrn3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 628
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 120/295 (40%), Gaps = 68/295 (23%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L +F++ +LPT+ + +++F+ +L + ++F+
Sbjct: 361 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFL------------------- 401
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F P E KKI +++ Y+ S + A +
Sbjct: 402 ------VTLIDISFAPNQAAE-------KKIKSLQ-----------YLGSYIGRAKKLSR 437
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I + ++ W + Y+ + ++ + FY+ QAL + ++HSI D+
Sbjct: 438 TQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHSIFRDTDG 497
Query: 182 NM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIH--QNAR 234
N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I N R
Sbjct: 498 NWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNNER 552
Query: 235 L-NVLPIVSTDALGNIIKLNTVNA------------LDQYSPFSTFLLVRCKSII 276
L ++ +D +++ NT ++ L Y PF L K+++
Sbjct: 553 LRGIIGKADSDRRETLVQANTASSSWSLATRQQFIDLQSYFPFDPLFLKNYKTLM 607
>gi|331220049|ref|XP_003322700.1| hypothetical protein PGTG_04237 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301690|gb|EFP78281.1| hypothetical protein PGTG_04237 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 826
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 74/258 (28%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKK----IANVKIYN 56
+FN LL+ FES+IL T HV F++F++ SL + ++ + L ++ + +
Sbjct: 488 AMFNLLLSNFESSILRTRRTRHVQFIMFWYASLEPAFADSLLATLVERGLYDTDDNSLPV 547
Query: 57 IFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHA 116
R + Y++SL+ A ++ + + + L C + L A
Sbjct: 548 ATRVAAVSYIASLISRAKYIDKHVTRHVVSLL-----------------CARLELGLAEA 590
Query: 117 HFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
H M V +H V+Y++ QA+F + ++ L
Sbjct: 591 HQMNVN-------------------------------QHVVWYAIAQAIFYIFCFRWKDL 619
Query: 177 V---------------------DSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFA 214
+ K N ++L L L R ++S LNPLR+C +VS FA
Sbjct: 620 LVEDDDDDEQDEANELNIRFSHPKKFNDRWLSGLKILERAIISPLNPLRTCADTVVSQFA 679
Query: 215 SITNTYQIVYCYNVIHQN 232
I++ +YCY+++ +N
Sbjct: 680 KISHETNFIYCYDIMRRN 697
>gi|443927023|gb|ELU45560.1| RNA polymerase I-specific transcription initiation factor rrn3
[Rhizoctonia solani AG-1 IA]
Length = 764
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 103/246 (41%), Gaps = 57/246 (23%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
L+A+F+ TI+ TH + FL+F++ SL
Sbjct: 416 LIAIFKRTIVKTHKSRYTQFLLFWYSSL-------------------------------- 443
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
HA F V F+ L ++ + + ++ R YV+S + A + +
Sbjct: 444 ------HADFTDV-----FLGVLMDRLMDTTLPDMARVGAASYVASFISRAKHIDTANAR 492
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEAC--SPV--KHPVFYSVCQALFSVITYK--------H 173
+ + + +D + + +PV ++ +FY++ QA+F + ++
Sbjct: 493 AVIGVLCDYLRDTVDKVEELEARDSNFTPVVSQYALFYAIAQAVFLIYCFRWRELGEDPD 552
Query: 174 SILVDSKKNMKFLQS--LNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQ 231
+LV+ ++ K L + R +MS LNPL+ C +V FA ++N+ VYC+ ++
Sbjct: 553 ELLVEGDESPKLWMPDLLVVQRAIMSALNPLKICAVNVVQQFARVSNSTGFVYCFTILES 612
Query: 232 NARLNV 237
N R ++
Sbjct: 613 NRRSDL 618
>gi|294654334|ref|XP_456384.2| DEHA2A01034p [Debaryomyces hansenii CBS767]
gi|199428799|emb|CAG84331.2| DEHA2A01034p [Debaryomyces hansenii CBS767]
Length = 657
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 121/306 (39%), Gaps = 79/306 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN + ++F++ ILPTH + F +F+ + + ++F+
Sbjct: 355 LFNTITSLFKTHILPTHFTKSIQFTLFHISQYQPELADSFL------------------- 395
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LLI F N E L K++ Y+SS + A +
Sbjct: 396 ------VLLIDVAF-------NTTEILEKRLK-----------AMQYLSSYIARAKNLSR 431
Query: 122 RVIKTCLNEMSQWCHSYL------------DNTDLT--DEEACSPVKHPVFYSVCQALFS 167
I ++ + W + Y+ DN + +++ + +FY+ QAL
Sbjct: 432 HQIVFVVSYLIGWLNKYVIERECEITDYDNDNKGRSTNNKQGGGMERFKLFYAAFQALLY 491
Query: 168 VITYKHSILVDSKKNM-------------KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFA 214
+ +++ +L ++ + KF Q R+++++ NPL+ C+ +V FA
Sbjct: 492 IFCFRYKVLYKTQGSTESSSDSEWECDLDKFFQ-----RVIIAKFNPLKFCDETVVYIFA 546
Query: 215 SITNTYQIVYCYNVIHQNARLNVLPIVST----DALGNIIKLNTVNALDQYSPFSTFLLV 270
I + YCY++I N R +L T A+GN + L+ Y PF +L
Sbjct: 547 KIATKLNVCYCYSIIEHNKRERMLQTNGTKNLPSAVGNFKQKQEFLDLEAYFPFDPLVLP 606
Query: 271 RCKSII 276
CK +I
Sbjct: 607 TCKVLI 612
>gi|356531325|ref|XP_003534228.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Glycine max]
Length = 628
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 55/277 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN LLA F+ T+L + F++FY C+L
Sbjct: 310 VFNTLLASFQRTVLNAYKSKFTQFVMFYACALD--------------------------- 342
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
P G F L I R S Y++S L A F+
Sbjct: 343 ---------------PEGCGVKFAMVLADMFGGDANPPITRMSAVAYLASYLTRAKFLSA 387
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++ + + + WC++Y D +P H VFYS CQA+ ++ ++ L+D +
Sbjct: 388 ALVTSIIQSLVDWCYAYCKFRDFD----MNPRAHQVFYSGCQAIMYIMCFRMRSLMDVPR 443
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
L ++ + ++ +L+PL+ C +V F Q+ + ++L
Sbjct: 444 LKLQLLNMPMEAILKHKLSPLKVCLPTVVVEFLRQAKAAQLFMASESFVFD---DMLESD 500
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ A G + + LD + PF LL R +S I P
Sbjct: 501 LSKAFGGM------DRLDMFFPFDPCLLKRSESYIRP 531
>gi|213404430|ref|XP_002172987.1| RNA polymerase I-specific transcription initiation factor rrn3
[Schizosaccharomyces japonicus yFS275]
gi|212001034|gb|EEB06694.1| RNA polymerase I-specific transcription initiation factor rrn3
[Schizosaccharomyces japonicus yFS275]
Length = 590
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 27/196 (13%)
Query: 102 RQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV--KHPVFY 159
R S Y+ S + A + + I+ +N + +W +YLD + ++ C + KH V Y
Sbjct: 396 RISSAMYIGSYVARAKSLDPQTIRVMVNMLCRWIEAYLDQYE---DDKCEDLLSKHSVCY 452
Query: 160 SVCQALFSVITYKHSILVDSKKN------MKFLQSLN-LTRLVMSQLNPLRSCNAEIVSH 212
++ Q++F + ++ L S +N ++L L L R V+S+LNPLR C+ +V
Sbjct: 453 AIIQSVFYIFCFRWKELKLSSENDSVGDKFEWLPGLAVLQRAVLSRLNPLRFCSTNVVQQ 512
Query: 213 FASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRC 272
FA + N +Y + +I N + + T +D + PF L +
Sbjct: 513 FAKVANHLNFLYVFTIIEHNRKSTIREGFET--------------IDCFFPFDPLRLPKV 558
Query: 273 KSIITPEIHCQADPIP 288
+ + P + + PIP
Sbjct: 559 LTFVQP-YYNEWRPIP 573
>gi|313225061|emb|CBY20854.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+L E++A+F +LP T V ++ FY SL+ F
Sbjct: 85 MLLREMVAIFGKVLLPQPNTTTVQYVYFYLLSLK---------------------GAFST 123
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
S C +++ K+I N R + Y++S L A F+
Sbjct: 124 SFC----------------------DWMLKRIRNKSESRSRRIALLSYLTSFLARAQFVS 161
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
++ +S C + E+ S K V+Y+ Q+LF +I ++H L +
Sbjct: 162 HSTLRNVAKILSTLCIKEHQRSIPEKEQHFSTEKFGVYYANAQSLFYLIIFRHKELGND- 220
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
++SL ++ +V S+LNPL +C I F I ++ +C++++ Q +L
Sbjct: 221 ----CIRSLGISEIVFSKLNPLAACVPSIALKFCDIMKETELAFCHHILEQFHERQLLAT 276
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLL 269
S + VN +D Y PF LL
Sbjct: 277 GSNE---------IVNPIDFYFPFDRCLL 296
>gi|328353977|emb|CCA40374.1| RNA polymerase I-specific transcription initiation factor RRN3
[Komagataella pastoris CBS 7435]
Length = 542
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 114/293 (38%), Gaps = 63/293 (21%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+ FN L+++F + ILPTH V +L+F+ + + ++F+
Sbjct: 283 ITFNNLISMFRTHILPTHYTRVVQYLLFHVTQYQSELMDSFL------------------ 324
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
LI F P E + K+I +++ Y++S + A +
Sbjct: 325 -------VTLIDVAFQPK-------EMVSKRIKSMQ-----------YLASYMARAKNVS 359
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
I ++ + W Y+ + + + +FYSV Q++ + +++S L
Sbjct: 360 KSQIVFIISYLISWIEKYIHEREEEINDGRGMDRFKMFYSVFQSVLYIFCFRYSSLKTDA 419
Query: 181 KNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNA-- 233
KF Q R++MS+ NPL+ CN +V FA I+ I YCY++I N
Sbjct: 420 NTWECNLDKFFQ-----RVIMSKFNPLKFCNDNVVLIFARISQEQDICYCYSIIESNKCE 474
Query: 234 RLNVL--------PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
R L P + ++ + L Y PF L R I+P
Sbjct: 475 RRKGLTGSTSSTNPTTGSGISWDLTSKQEFSDLAAYFPFDPLFLRRTAKFISP 527
>gi|385305939|gb|EIF49881.1| rrn3p [Dekkera bruxellensis AWRI1499]
Length = 217
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 12/190 (6%)
Query: 102 RQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVF--- 158
R YV S + A + + T + + WC+ Y+ T+ E F
Sbjct: 30 RIKAMQYVCSFMARAKSLTRGQLLTVMKYLMSWCNEYV--TEREKEVGTGKGGMERFAML 87
Query: 159 YSVCQALFSVITYKHSILVDSKKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASI 216
Y V Q L + ++ L + ++ L+ +++MS+ NPL+ CN +V FA I
Sbjct: 88 YCVLQGLMYIFCFRFRDLKKEDNDEEWELRLDKFFNKMIMSRFNPLKFCNETVVLIFARI 147
Query: 217 TNTYQIVYCYNVIHQNARLNVLPIV-----STDALGNIIKLNTVNALDQYSPFSTFLLVR 271
+ YC+++I +N R + I S +L + L+ Y PF +L
Sbjct: 148 VQKVDMCYCFSIIDKNKRERLNGIRDATANSESSLNRFERKQEFLDLEAYFPFDPLMLKD 207
Query: 272 CKSIITPEIH 281
K TPE+H
Sbjct: 208 SKKDNTPELH 217
>gi|254574188|ref|XP_002494203.1| Protein required for transcription of rDNA by RNA polymerase I
[Komagataella pastoris GS115]
gi|238034002|emb|CAY72024.1| Protein required for transcription of rDNA by RNA polymerase I
[Komagataella pastoris GS115]
Length = 579
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 114/293 (38%), Gaps = 63/293 (21%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+ FN L+++F + ILPTH V +L+F+ + + ++F+
Sbjct: 320 ITFNNLISMFRTHILPTHYTRVVQYLLFHVTQYQSELMDSFL------------------ 361
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
LI F P E + K+I +++ Y++S + A +
Sbjct: 362 -------VTLIDVAFQPK-------EMVSKRIKSMQ-----------YLASYMARAKNVS 396
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
I ++ + W Y+ + + + +FYSV Q++ + +++S L
Sbjct: 397 KSQIVFIISYLISWIEKYIHEREEEINDGRGMDRFKMFYSVFQSVLYIFCFRYSSLKTDA 456
Query: 181 KNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNA-- 233
KF Q R++MS+ NPL+ CN +V FA I+ I YCY++I N
Sbjct: 457 NTWECNLDKFFQ-----RVIMSKFNPLKFCNDNVVLIFARISQEQDICYCYSIIESNKCE 511
Query: 234 RLNVL--------PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
R L P + ++ + L Y PF L R I+P
Sbjct: 512 RRKGLTGSTSSTNPTTGSGISWDLTSKQEFSDLAAYFPFDPLFLRRTAKFISP 564
>gi|189211901|ref|XP_001942278.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187979477|gb|EDU46103.1| ribosomal DNA transcription factor Rrn3 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 689
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 76/315 (24%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
++ LLA F+S I+PT+ H F++F+F L +F+E +F +
Sbjct: 360 MYETLLAQFQSIIIPTYRSRHAQFVLFHFSQL----SPHFME-------------LFVDA 402
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C S L I A+ P + R S C Y++S + +P
Sbjct: 403 C----SRLAIDANRPP----------------------LLRASACAYLASYIARGAHVPG 436
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV- 177
+++ + C S L+ T E C+ ++ +Y++ QAL ++ L+
Sbjct: 437 FLVRDVFATL---C-SQLERLRATHEPKCTGPDLRRYGTYYAIAQALLYAFCFRWRDLIV 492
Query: 178 --DSK---------KNMKFL---QSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQI 222
D K + FL ++L L R + +LNPLR C +IV F I +
Sbjct: 493 TTDGKLPSDTDIMYHDGDFLWHGKTLEILRRNIFCKLNPLRICAPDIVKQFGRIAKHLRF 552
Query: 223 VYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNA---------LDQYSPFSTFLLVRCK 273
Y +++ N R+ + V++ L I T +D Y PF ++L R K
Sbjct: 553 TYVDSLVETNKRVRLSRSVASSYLTGIGGRETALTGKKGEEAFLMDAYFPFDPYVLPRSK 612
Query: 274 SIITPEIHCQADPIP 288
+ + + Q P+P
Sbjct: 613 RWVEGD-YVQWSPVP 626
>gi|406866180|gb|EKD19220.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 687
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 122/314 (38%), Gaps = 78/314 (24%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
++ LL F TILP + H FL+F+F Q+
Sbjct: 389 MYETLLRHFSDTILPMYRSRHTQFLLFHFA----------------------------QT 420
Query: 62 CCHYVSSL---LIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHF 118
H V S LI F P + RQS Y++S +
Sbjct: 421 AEHLVDSFAGTLIQLAFQPSRAA------------------VQRQSSAAYLASFVARGAH 462
Query: 119 MPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSI 175
+ V++T + + + + +LT C ++ FY++ QAL + ++
Sbjct: 463 VQASVVRTVFDIIGDNLDTIRSHNELT----CRGPDLQRYGTFYAMTQALLYIFCFRWRD 518
Query: 176 LVDSKK------NMKFL-QSLN--------LTRLVMSQLNPLRSCNAEIVSHFASITNTY 220
L+ S + + F+ Q LN LTR + S+LNPL+ C+ IV+ FA I
Sbjct: 519 LITSSEISEEEDPVGFVSQDLNWTAGVKETLTRAIYSKLNPLKVCSPPIVAEFAKIARHL 578
Query: 221 QIVYCYNVIHQNARLNVLPIVS---TDAL---GNIIKLNTVNALDQYSPFSTFLLVRCKS 274
+ +Y Y ++ N R+ + S T AL GN ++ + LD Y PF + L K
Sbjct: 579 RFMYVYPLLETNKRIRLGQYYSGHATGALRDTGNGGNNDSWHQLDAYFPFDPYQLPISKR 638
Query: 275 IITPEIHCQADPIP 288
I + + Q IP
Sbjct: 639 WIEGD-YVQWKSIP 651
>gi|448514488|ref|XP_003867127.1| Rrn3 protein [Candida orthopsilosis Co 90-125]
gi|380351465|emb|CCG21689.1| Rrn3 protein [Candida orthopsilosis Co 90-125]
Length = 651
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 115/313 (36%), Gaps = 85/313 (27%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
LFN + ++F+S ILPTH + F++F + + ++F+
Sbjct: 324 TLFNTINSLFKSHILPTHFTKSIQFILFRITQYQQELADSFL------------------ 365
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
LLI F P I E R Y+SS + A +
Sbjct: 366 -------VLLIDVAFNPNEIVEK------------------RLKAMQYISSYIARAKNLS 400
Query: 121 VRVIKTCLNEMSQWCHSYL-----DNTDLTDEEACSPVKH-------PVFYSVCQALFSV 168
I ++ + W + Y+ + D+ +++ + +FYS QAL +
Sbjct: 401 RHQIVFIVSYLMGWLNKYIIEREQETFDIENKQKSGSQQQTGGMERFKLFYSAFQALLYI 460
Query: 169 ITYKHSILVDSKKNM--------------------KFLQSLNLTRLVMSQLNPLRSCNAE 208
++H L KF Q R+++ + NPL+ C+
Sbjct: 461 FCFRHEQLRKDPSQSTSTSTSTTSSSSSEWECDIDKFFQ-----RVIIVKFNPLKFCDET 515
Query: 209 IVSHFASITNTYQIVYCYNVIHQNARLNVLP-----IVSTDALGNIIKLNTVNALDQYSP 263
+V FA + + YCY++I N R +L ++ A+GN + L+ Y P
Sbjct: 516 VVYIFAKLATKLNVCYCYSIIEHNKRERMLQTNGSIVLPPSAVGNFKQKQEFLDLEAYFP 575
Query: 264 FSTFLLVRCKSII 276
F +L CK ++
Sbjct: 576 FDPLVLPMCKKLV 588
>gi|146413997|ref|XP_001482969.1| hypothetical protein PGUG_04924 [Meyerozyma guilliermondii ATCC
6260]
Length = 650
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 128/329 (38%), Gaps = 58/329 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L +F++ ILPTH FL+F+ + + + F+
Sbjct: 366 IFNSLSKLFQTHILPTHFTKLTQFLLFHISQSKAELSDAFL------------------- 406
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
M + I E + K+I Y+SS + A +
Sbjct: 407 -------------VMLIDIAFKVDEMVEKRI-----------KAMQYLSSYIARAKSLSR 442
Query: 122 RVIKTCLNEMSQWCHSYLDN-----TDLTDEEACSPV-----KHPVFYSVCQALFSVITY 171
+ ++ + +W + Y+ +D D + S + +FY+ Q L V +
Sbjct: 443 DQVVFVVSYLMEWLNRYVQERECEISDYEDNKTGSKSVGGMERFKLFYAAFQVLIYVFCF 502
Query: 172 KHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQ 231
+H +L++S + R+++++ NPL+ C+ +V FA I + YCY++I
Sbjct: 503 RHQMLLNSSGEWECEIDQFFQRVIVTKFNPLKYCDETVVFIFAKIATKMNVCYCYSIIEH 562
Query: 232 NARLNVLPIVSTDALGNII---KL-NTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPI 287
N R +L + L + + KL L+ Y PF +L K II+ A+
Sbjct: 563 NKRERMLLTRGKNNLPSAVYNFKLKQEFLDLEAYFPFDPIVLPNSKEIISANYIEWAEVN 622
Query: 288 PVTTNTNRTQNLLIADPVSSKQADHDEDD 316
P T + N + + S + +EDD
Sbjct: 623 P-TEDDNEDEESGSYEQDSDESITSEEDD 650
>gi|169861684|ref|XP_001837476.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Coprinopsis cinerea okayama7#130]
gi|116501497|gb|EAU84392.1| ribosomal DNA transcription factor Rrn3 [Coprinopsis cinerea
okayama7#130]
Length = 799
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 55/255 (21%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ LL++F+ TIL T + FL+F++ SL + + +IF+
Sbjct: 425 FHALLSIFDRTILSTFKSRYTQFLLFWYTSL-----------------DPEFADIFQ--- 464
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
L+ A F P G + R + Y+ S + A F+
Sbjct: 465 ----GMLVDRALFSPSDTG--------SSSGPSSTAEVNRAAAASYIGSFVSRATFVDRE 512
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEE-------ACSPVKHPVFYSVCQALFSVITYKH-- 173
+ + + + ++LD D E + +H VFY+V QA+F + ++
Sbjct: 513 GTRRVVGVLCDYLGAHLDGVDEAIREHGPSWIANTTSAQHTVFYAVTQAVFLIFCFRWRD 572
Query: 174 ------------SILVDSK-KNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNT 219
S +V +K K++ L L R+V+S LNPL+ C++ +V FA +
Sbjct: 573 LQEDLEFDDEVLSTVVGAKVAKDKWIPHLQVLKRVVLSVLNPLKVCSSGVVEQFAKVAQQ 632
Query: 220 YQIVYCYNVIHQNAR 234
+YCY+V+ N R
Sbjct: 633 TDFMYCYSVLESNKR 647
>gi|358336320|dbj|GAA43139.2| hypothetical protein CLF_105888 [Clonorchis sinensis]
Length = 877
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 4/144 (2%)
Query: 83 NFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYL-DN 141
N+ EFLW I + + R + Y++SLL P ++ L++M++WC Y+ N
Sbjct: 627 NWTEFLWNTIKDDQQDCGTRVAAVAYLASLLSRIRTCPSDLVIELLHDMTRWCVDYVYRN 686
Query: 142 TDL---TDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQ 198
L T+ +H ++Y+VC A+F +I H+ L+D++ ++L L ++++S
Sbjct: 687 RGLIVVTNGAELLVTEHRIYYAVCDAIFYIIVQLHATLLDNEYYRASCETLPLAQIMLSP 746
Query: 199 LNPLRSCNAEIVSHFASITNTYQI 222
L+PL + A++ F I + Y +
Sbjct: 747 LSPLENTPADLRWAFERIVSMYHL 770
>gi|324503530|gb|ADY41533.1| Unknown [Ascaris suum]
Length = 634
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 105/275 (38%), Gaps = 60/275 (21%)
Query: 5 ELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCH 64
+L ++FE IL H + HV F+ CS + +LW
Sbjct: 322 QLRSIFEEHILMAHDVKHVSFVWLVSCSHEPEYMAEMLRWLW------------------ 363
Query: 65 YVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVI 124
SL+ P WKK Q Y+ + L A + + +
Sbjct: 364 ---SLITRPGQSPND---------WKKA----------QGAACYMGAFLSRAVAVDLSMS 401
Query: 125 KTCLNEMSQWCHSYLDNT-DLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNM 183
+ M + C +Y++ D ++ ++H FY++CQAL +++ LVD+ + +
Sbjct: 402 IEWMERMMRLCRNYINEVVDRSNSATAGIIRHGTFYALCQALLLTFCFRYKELVDTNE-L 460
Query: 184 KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVST 243
+ ++ +V S L PLR + + FA I+ + Q+VYC +V+ + LP
Sbjct: 461 EAVRQWGFGHIVHSALEPLRFISRPVAQCFAIISRSLQLVYCNHVLPTASAEEKLP---- 516
Query: 244 DALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ PF +FLL + + P
Sbjct: 517 --------------FEPLFPFDSFLLTQSSIFVRP 537
>gi|342321538|gb|EGU13471.1| Pirin domain-containing protein [Rhodotorula glutinis ATCC 204091]
Length = 1886
Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats.
Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 54/252 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIE-FLWKKIANVKIYNIFRQ 60
LF LL +F+ T+L T +V F++FY CSL + ++FI L + + + + R
Sbjct: 1225 LFRTLLDIFDRTLLRTFKTRNVQFVLFYLCSLDSASTDHFIGVLLGRALFDQDAPPVTRV 1284
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
+ YV+S + A ++ ++ + L C Y+
Sbjct: 1285 AAAGYVASFIARAKYVDAAMTRKVVRHL-----------------CGYLEG--------- 1318
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEA-CSPVKHPVFYSVCQALFSVITYKHSI---- 175
+M + + T + +A + PVFY+V QA+F + ++
Sbjct: 1319 ---------QMEDYARTSALATSIAGAKAPGGGSELPVFYAVAQAVFYIFCFRWKDLLDE 1369
Query: 176 -----------LVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVY 224
L ++ M L+++ + V S NPL+ C +V+ FASI + +Y
Sbjct: 1370 DDADDEAALFGLDAGRRWMMGLETVK--KAVSSSFNPLKVCAQPVVNQFASIAHKTGFMY 1427
Query: 225 CYNVIHQNARLN 236
CY ++ N R N
Sbjct: 1428 CYAILDSNRRAN 1439
>gi|260945663|ref|XP_002617129.1| hypothetical protein CLUG_02573 [Clavispora lusitaniae ATCC 42720]
gi|238848983|gb|EEQ38447.1| hypothetical protein CLUG_02573 [Clavispora lusitaniae ATCC 42720]
Length = 478
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 104/267 (38%), Gaps = 68/267 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN L ++F S ILPTH + FL+F+ + + + ++
Sbjct: 258 LFNTLTSLFRSHILPTHFTKSIQFLLFHISQYQPELADAYL------------------- 298
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LLI F P E R Y+SS + A +
Sbjct: 299 ------VLLIDVAFNPNETTEK------------------RLKALQYLSSYIARAKNLTK 334
Query: 122 RVIKTCLNEMSQWCHSYLDNT-----DLTDEEACSPVKH-PVFYSVCQALFSVITYKHSI 175
I + + W + Y+ D +E + ++ +FY+ QAL + ++H
Sbjct: 335 HQIVFIASYLIGWLNKYITEREHEVFDFDNENSSGGMERFKLFYATFQALLYIFCFRHKH 394
Query: 176 LVDSKKNM------------KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
L+ S ++ +F Q R+++++ NPL+ C+ +V FA I +
Sbjct: 395 LIKSADDIANGDSEWECDIDRFFQ-----RVIIAKFNPLKYCDETVVFIFAKIATKLNVC 449
Query: 224 YCYNVIHQNARLNVLPIVST--DALGN 248
YCY++I N R +L ST A+GN
Sbjct: 450 YCYSIIEHNKRERMLQSNSTLPSAVGN 476
>gi|448096805|ref|XP_004198521.1| Piso0_001896 [Millerozyma farinosa CBS 7064]
gi|359379943|emb|CCE82184.1| Piso0_001896 [Millerozyma farinosa CBS 7064]
Length = 674
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 51/293 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN L ++F+S ILPTH + F+ F+ + + ++++ L N+ R
Sbjct: 372 LFNTLTSLFKSHILPTHFTKSIQFVHFHISQYQPELMDSYLVLLIDIAFNIDEILEKRLK 431
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y+SS + A KK++ +I +F Y++ L ++
Sbjct: 432 AMQYLSSYIARA----------------KKLSKNQI--VF---VVSYLTGWL--NKYVDE 468
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
R + N+ ++ H ++ ++ + +FY+ QAL + ++H+ L
Sbjct: 469 RECEVLENKKERFRHK-----EMETRQSAGMERFKLFYAAFQALLYIFCFRHNSLFKEAD 523
Query: 182 NM--------------KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYN 227
+ KF Q R+++ + NPL+ C+ +V FA I+ + YCY+
Sbjct: 524 AVYTEPSDSEWECEIDKFFQ-----RMILVKFNPLKYCDETVVFIFAKISTKLNVCYCYS 578
Query: 228 VIHQNARLNVLPIVSTDAL----GNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
++ N R +L ++ L N + L+ Y PF +L +CK I+
Sbjct: 579 ILEHNKRERMLQNDTSSMLPSSTTNFRQKQEFLDLEAYFPFDPLVLPQCKEIV 631
>gi|354546997|emb|CCE43730.1| hypothetical protein CPAR2_213730 [Candida parapsilosis]
Length = 661
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 121/306 (39%), Gaps = 68/306 (22%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
LFN + ++F+S ILPTH + F++F + + ++F+
Sbjct: 328 ALFNTINSLFKSHILPTHFTKSIQFILFRITQYQQELADSFL------------------ 369
Query: 61 SCCHYVSSLLIHAHFMPVSIGEN---FIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAH 117
LLI F P I E +++L IA K N+ R VS L+ +
Sbjct: 370 -------VLLIDVAFNPNEIVEKRLKAMQYLSSYIARAK--NLSRHQIVFIVSYLMGWLN 420
Query: 118 -FMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
++ R +T E Q +S + ++ + +FYS QAL + ++H L
Sbjct: 421 KYIIEREQETFDIENKQKQNS------TSRQQTGGMERFKLFYSAFQALLYIFCFRHEQL 474
Query: 177 VDSKKNM----------------------KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFA 214
+ KF Q R+++ + NPL+ C+ +V FA
Sbjct: 475 RKDPSSSTTATTSSSSSSTSSSEWECDIDKFFQ-----RVIIVKFNPLKFCDETVVYIFA 529
Query: 215 SITNTYQIVYCYNVIHQNARLNVL----PIVSTDALGNIIKLNTVNALDQYSPFSTFLLV 270
+ + YCY++I N R +L V A+GN + L+ Y PF +L
Sbjct: 530 KLATKLNVCYCYSIIEHNKRERMLQTNGSTVLPSAVGNFKQKQEFLDLEAYFPFDPLVLP 589
Query: 271 RCKSII 276
+CK I+
Sbjct: 590 KCKKIV 595
>gi|453085584|gb|EMF13627.1| RNA polymerase I-specific transcription initiation factor RRN3,
partial [Mycosphaerella populorum SO2202]
Length = 697
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 119/302 (39%), Gaps = 73/302 (24%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
+ ELL+ F + I+P H H FL+F+F + E+FI K+ + + R
Sbjct: 370 YQELLSHFNNFIMP-HRSRHAQFLLFHFAQYSSAYSEDFINRFIKRTTDRDVAAPLRLQA 428
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
C YV+S A +P+ + + L + + +++ + CH P R
Sbjct: 429 CAYVASFTARASHLPMHLVQRVFAELGRVMDDLR---YMYEPNCH-----------GPDR 474
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVD---- 178
+ + ++Y++ QAL + ++ LVD
Sbjct: 475 KM------------------------------YGMYYAIAQALLYIFCFRWRDLVDPTKL 504
Query: 179 ----------SKKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
++++ ++ + L R +MS LNPL+ C+ IV FA I + +Y +
Sbjct: 505 GDMTEEDIIAEQRDLPWIAGVKETLNRNIMSALNPLKVCSPAIVGEFAKIAWHLRFLYVF 564
Query: 227 NVIHQNARLNVLPIVSTDALGNIIKL------------NTVNALDQYSPFSTFLLVRCKS 274
++I +N R+ + +L + L ++ + L+ Y PF + L + K
Sbjct: 565 SLIERNKRVRLGQAPQLYSLTGGVDLGRRETAWDRKTGDSHHQLEAYFPFDPYHLPQSKR 624
Query: 275 II 276
I
Sbjct: 625 WI 626
>gi|448110800|ref|XP_004201698.1| Piso0_001896 [Millerozyma farinosa CBS 7064]
gi|359464687|emb|CCE88392.1| Piso0_001896 [Millerozyma farinosa CBS 7064]
Length = 673
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 118/308 (38%), Gaps = 81/308 (26%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN L ++F+S ILPTH + F+ F+ + + ++++ L
Sbjct: 371 LFNTLTSLFKSHILPTHFTKSIQFVHFHISQYQPELMDSYLVLL---------------- 414
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ I N E L K++ Y+SS + A +
Sbjct: 415 ----------------IDIAFNVDEILEKRLK-----------AMQYLSSYIARAKKLSK 447
Query: 122 RVIKTCLNEMSQWCHSYLDN---------------TDLTDEEACSPVKHPVFYSVCQALF 166
I ++ + W + Y+D D+ ++ + +FY+ QAL
Sbjct: 448 NQIVFVVSYLIGWLNKYVDERECEVLDNIKEKSRHKDVETRQSAGMERFKLFYAAFQALL 507
Query: 167 SVITYKHSILVDSKKNM--------------KFLQSLNLTRLVMSQLNPLRSCNAEIVSH 212
+ ++H+ L ++ KF Q R+++ + NPL+ C+ +V
Sbjct: 508 YIFCFRHNSLFKEADSVYTEPSDSEWECEIDKFFQ-----RMILVKFNPLKYCDETVVFI 562
Query: 213 FASITNTYQIVYCYNVIHQNARLNVLPIVSTDAL----GNIIKLNTVNALDQYSPFSTFL 268
FA I+ + YCY+++ N R +L ++ L N + L+ Y PF +
Sbjct: 563 FAKISTKLNVCYCYSILEHNKRERMLQNDTSSMLPSSTTNFRQKQEFLDLEAYFPFDPLV 622
Query: 269 LVRCKSII 276
L +CK I+
Sbjct: 623 LPQCKEIV 630
>gi|410079010|ref|XP_003957086.1| hypothetical protein KAFR_0D03030 [Kazachstania africana CBS 2517]
gi|372463671|emb|CCF57951.1| hypothetical protein KAFR_0D03030 [Kazachstania africana CBS 2517]
Length = 627
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/316 (19%), Positives = 126/316 (39%), Gaps = 51/316 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L+ +F++ ILPT+ + +++F+ + + ++F+
Sbjct: 361 IFNTLITLFKTHILPTYYTRSIQYIMFHISQQQPELMDSFL------------------- 401
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F E KKI ++ Y+ S + A +
Sbjct: 402 ------VTLIDTSFSTNETSE-------KKIKSL-----------QYLGSYIARAKRLSR 437
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ I + ++ W + Y+ + ++ + FY+ QAL + ++H+ D
Sbjct: 438 QQIVFVASYITSWLNRYVIEREEEVDQPGGMERFKHFYAAFQALCYIFCFRHNFFKDQDG 497
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
N + R+++S+ NPL+ CN ++ FA IT I YC+++I +N + I+
Sbjct: 498 NWEIELDKFFQRMIISKFNPLKYCNENVMLMFAKITQKEDIAYCFSIIEKNNNERLRGIM 557
Query: 242 S-TDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
D G+ ++ Q + ST+ L + I + + DP+ + ++
Sbjct: 558 GKADNPGS-------DSKKQLASASTWSLATRQQFIDLQSYFPFDPLFLKNYKRMMKDYY 610
Query: 301 IADPVSSKQADHDEDD 316
I +S + DE D
Sbjct: 611 IEWSEASSDYESDESD 626
>gi|367003667|ref|XP_003686567.1| hypothetical protein TPHA_0G02920 [Tetrapisispora phaffii CBS 4417]
gi|357524868|emb|CCE64133.1| hypothetical protein TPHA_0G02920 [Tetrapisispora phaffii CBS 4417]
Length = 642
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 120/297 (40%), Gaps = 64/297 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN+L A+F+S +LPT+ + +++FY + + ++F+
Sbjct: 368 LFNKLTALFKSHVLPTYYTKSIQYIMFYISQQQNELMDSFL------------------- 408
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F E I+ L Y+ S + A
Sbjct: 409 ------VTLIDIAFSSNETSETKIKSL------------------QYLGSYIARAK---- 440
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV----KHPVFYSVCQALFSVITYKHSILV 177
+V KT + ++ + S+L+ L EE + + FY+ QAL + ++HS L
Sbjct: 441 KVSKTQVIFVTSYLTSWLNRFVLEREEEVDQIGGMERFKQFYATFQALCYMFCFRHSDLK 500
Query: 178 DSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQN 232
D+ N KF Q R+V+S+ NPL+ CN ++ FA IT I YC+ +I N
Sbjct: 501 DADGNWDCELDKFFQ-----RMVISKFNPLKYCNENVMMMFARITQHEGIAYCFGIIESN 555
Query: 233 ARLNVLPIVSTDALGNIIKLNTVNALDQYSPF--STFLLVRCKSIITPEIHCQADPI 287
+ I+ + + N V S F ST+ LV + I + + DP+
Sbjct: 556 NNERLRGIMGRSSTPTTER-NGVTDDKSSSNFTASTWSLVTRQQFIDLQSYFPFDPL 611
>gi|156845432|ref|XP_001645607.1| hypothetical protein Kpol_1033p56 [Vanderwaltozyma polyspora DSM
70294]
gi|156116272|gb|EDO17749.1| hypothetical protein Kpol_1033p56 [Vanderwaltozyma polyspora DSM
70294]
Length = 620
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 62/322 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L +F+S ILPT+ + +++F+ + + ++F+
Sbjct: 353 IFNTLTTLFKSHILPTYYTRSIQYIMFHISQQQTELMDSFL------------------- 393
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F P E KK+ +++ Y+ S + A +
Sbjct: 394 ------VTLIDIAFSPNETSE-------KKVKSLQ-----------YLGSYIARAKHLSR 429
Query: 122 RVIKTCLNEMSQWCHSYL-DNTDLTDE-EACSPVKHPVFYSVCQALFSVITYKHSILVDS 179
I + ++ W + YL + D D+ KH FY+ Q+L + ++H++ D
Sbjct: 430 TQIVFVASYLTSWLNRYLLEREDEVDQPGGMERFKH--FYAAFQSLCYMFCFRHNVFKDV 487
Query: 180 KKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR 234
KF Q R+V+S+ NPL+ CN ++ FA IT I YC+ +I N
Sbjct: 488 DGKWECELDKFFQ-----RMVISKFNPLKYCNENVMMMFARITQHEGIAYCFGIIETNNN 542
Query: 235 LNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTN 294
+ I+ A + S ST+ L+ + I + + DP+ + +
Sbjct: 543 ERLRGIIGRSASD-----KEASGSQSISQASTWSLITRQQFIDLQSYFPFDPLLLKNYKS 597
Query: 295 RTQNLLIADPVSSKQADHDEDD 316
+ I +S + + DE D
Sbjct: 598 LMKEYYIEWSEASGEYESDESD 619
>gi|290977280|ref|XP_002671366.1| predicted protein [Naegleria gruberi]
gi|284084934|gb|EFC38622.1| predicted protein [Naegleria gruberi]
Length = 821
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 122/299 (40%), Gaps = 77/299 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F+ ++ +F S +L + + + FL+FY CS
Sbjct: 369 IFHSMMVLFRSFVLNQYQLHSIQFLMFYVCSF---------------------------- 400
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
H ++M E FI FL I N +++ R+ C Y+S LL A ++
Sbjct: 401 ----------HVNYM-----ERFISFLLGNIFNSQLHVEVRKCCAAYLSGLLSRAKYVTN 445
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK---HPVFYSVCQALFSVITYK------ 172
++ L ++ W Y+ +T E++ + H +FYS+CQ +F V+ +K
Sbjct: 446 TIVLRTLGQLLAWSEKYI----ITFEQSLQYLDVETHSLFYSICQGVFYVLCFKIQQLLK 501
Query: 173 ---------HSILVDSKKNM----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNT 219
I D K+ M +F + R++ S+ NPL+ +++ + +
Sbjct: 502 PEDGEGGETSPIRKDVKQLMAEGRQFFSQSPIKRIIYSKFNPLKIVASDVAEEVVNAFSR 561
Query: 220 YQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ + ++V+ +N + V+P+ N ++ N + PF +LL + + I P
Sbjct: 562 FYLFDFHHVLEENQNI-VVPLRGGYGGVNYLENN-------FFPFDPYLLRKSEKYILP 612
>gi|392574560|gb|EIW67696.1| hypothetical protein TREMEDRAFT_12429, partial [Tremella
mesenterica DSM 1558]
Length = 823
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 124/346 (35%), Gaps = 114/346 (32%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL +F ILPT H+PFL+F S S + F+ L S
Sbjct: 438 FQSLLNIFSRQILPTSHTQHIPFLLFLCASFSPSHTDLFLGLL--------------VSQ 483
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
Y ++ I A P+S+ + R + YV SL+ A +
Sbjct: 484 ALYGTTTSISASNTPISLNQ-------------------RIAATVYVGSLVTRARY---- 520
Query: 123 VIKTCLNEMSQWCHSYLDN------TDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
V ++ + +Y+D ++ DE P+FY+VCQA + ++ L
Sbjct: 521 VNDEHARQVMTYLLAYIDGRLHHPASERFDE-------LPLFYAVCQATMLIFCFRWRAL 573
Query: 177 V------------------------------------DSKKNMKFLQSLN-LTRLVMSQL 199
+S ++ ++++ L+ L R++ S L
Sbjct: 574 RPASVRAREDSGEPDDVEGGMGMVGELEMDDGTGETDESTQDGRWIKDLDVLQRVITSPL 633
Query: 200 NPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVS----------------- 242
NPL CN +V FA + + YC+++I NA L P+ S
Sbjct: 634 NPLLGCNPTVVKTFAKVAHQTGFAYCFSIIEANAALGRNPMSSNFNTATKGKAQTPSASR 693
Query: 243 -TDALGNII---------KLNTVNALDQYSPFSTFLLVRCKSIITP 278
T +LG+ + + N LD Y PF + L R + P
Sbjct: 694 VTTSLGSGMANTLAKQARQSNIDAGLDDYFPFDPYDLARSGRYVEP 739
>gi|115396742|ref|XP_001214010.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus terreus NIH2624]
gi|114193579|gb|EAU35279.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 686
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 124/311 (39%), Gaps = 77/311 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F++ ILPT+ H FL+F+F ++ + + F +C
Sbjct: 393 LLSHFQTIILPTYRSRHSQFLLFHFSQ-----------------SDPVLVDQFATAC--- 432
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
+E ++KK I RQS Y++S + + V++
Sbjct: 433 -------------------VELMFKKNQPA----IMRQSAAAYLASFVARGAHISSEVVR 469
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV----- 177
+ + ++L+N + E C+ ++ FYS QAL + ++ L
Sbjct: 470 DVFDLLG----THLNNLRMDYEPTCAGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAAAD 525
Query: 178 -DSKKNMKFLQSLN----------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
DS + + L+ + L + V S+LNPL+ C IVS FA ++ +Y +
Sbjct: 526 GDSPEQVDELEPEDIAFPPQVKEVLQQAVHSKLNPLKVCAPAIVSEFARMSQHLNFMYVF 585
Query: 227 NVIHQNARLNVLPIVSTDALGNI----IKLNTVNA------LDQYSPFSTFLLVRCKSII 276
+++ N RL V S AL + ++ T LD Y PF + L R + I
Sbjct: 586 SILETNKRLRVSGYRSLAALADPRFSHVERETRAGDDLAYQLDAYFPFDPYQLPRSRRWI 645
Query: 277 TPE-IHCQADP 286
+ +H + P
Sbjct: 646 EGDYVHWRGIP 656
>gi|363749595|ref|XP_003645015.1| hypothetical protein Ecym_2473 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888648|gb|AET38198.1| Hypothetical protein Ecym_2473 [Eremothecium cymbalariae
DBVPG#7215]
Length = 648
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 52/249 (20%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
FN L+++F+S ILPT+ V +L+F+ + + + F+
Sbjct: 366 FNTLISLFKSHILPTYYTRSVQYLMFHVSQQQTELMDAFL-------------------- 405
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
LI F P E + KKI +++ Y+ S + A +
Sbjct: 406 -----VTLIDIAFSPN-------ETIEKKIKSLQ-----------YIGSFIARAKKLTHT 442
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKN 182
I + + W H Y+ + E+ + FY+ Q+L + ++HSI D
Sbjct: 443 QIVFVASYLISWLHRYVLEREEEVEQPGGMDRFKHFYAAFQSLCYIFCFRHSIFRDGNSW 502
Query: 183 M----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
KF Q R+V+S+ NPL+ CN ++ FA I +VYC+++I N +
Sbjct: 503 ECSIDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQHEDVVYCFSIIENNNNERLR 557
Query: 239 PIVSTDALG 247
I+ + G
Sbjct: 558 GIIGKSSDG 566
>gi|330915448|ref|XP_003297038.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Pyrenophora teres f. teres 0-1]
gi|311330536|gb|EFQ94887.1| hypothetical protein PTT_07309 [Pyrenophora teres f. teres 0-1]
Length = 679
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 125/320 (39%), Gaps = 86/320 (26%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+++ LLA F+S I+PT+ H F++F+F + +F+E +F ++
Sbjct: 360 MYDTLLAQFQSIIIPTYRSRHAQFVLFHFSQM----SPHFME-------------LFVEA 402
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C S L I ++ P + R S C Y++S + +P
Sbjct: 403 C----SRLAIDSNRPP----------------------LLRASACAYLASYIARGAHVPG 436
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV- 177
V++ + + L+ T E C+ ++ +Y++ QAL ++ L+
Sbjct: 437 FVVRDVFGTLCE----QLERLRATHEPKCTGPDLRRYGTYYAIAQALLYAFCFRWRDLIV 492
Query: 178 --DSK------------------KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASIT 217
DSK K ++ L+ R + +LNPLR C +IV F I
Sbjct: 493 TTDSKLPTDADIMYHEGDFSWHGKTLEILR-----RNIFCKLNPLRICAPDIVKQFGRIA 547
Query: 218 NTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNA---------LDQYSPFSTFL 268
+ Y ++ N R+ + V++ L I T +D Y PF ++
Sbjct: 548 KHLRFTYVDTLVETNKRVRLSCSVASSYLTGIGGRETALTGKKGEEAFLMDAYFPFDPYV 607
Query: 269 LVRCKSIITPEIHCQADPIP 288
L R K + + + Q P+P
Sbjct: 608 LPRSKRWVEHD-YVQWSPVP 626
>gi|210075839|ref|XP_503342.2| YALI0D26994p [Yarrowia lipolytica]
gi|199425858|emb|CAG81548.2| YALI0D26994p [Yarrowia lipolytica CLIB122]
Length = 649
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 115/305 (37%), Gaps = 82/305 (26%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
++ L+ VF++ +LPTH V ++VF Q+
Sbjct: 355 MYASLINVFKTYLLPTHRTRFVQYIVFQAS----------------------------QA 386
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C ++ + L + +S GE + R Y++S + A +
Sbjct: 387 CPEFMDAFLASLIEITLSSGEGMDK---------------RSKAMQYIASYIARAKHLSK 431
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLT-DEEACSPVKHPVFYSVCQALFSVITYKHSIL-VDS 179
I ++ ++ W Y+ + + S + FYSV Q L + +++ +L +DS
Sbjct: 432 AQIVFVVSMLTGWIDRYVSEREAEVNGVPGSMERFKTFYSVVQGLMYIFCFRNEMLRLDS 491
Query: 180 K----------KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
K KF Q R++M++ NPL+ CN +V+ FA I + + YC+ +I
Sbjct: 492 DAPEGDSVWECKLDKFFQ-----RIIMTKFNPLQYCNHSVVAMFAKIAHHHDAAYCFTII 546
Query: 230 HQNARLNVLPIVSTDALGNIIKLNTVNA------------------LDQYSPFSTFLLVR 271
+N R IV D K A L+ Y PF LL R
Sbjct: 547 DENKR----GIVRKDLHDKKDKTMPPRAFMEGAATLFDGPQKEFTQLEGYFPFDPLLLKR 602
Query: 272 CKSII 276
+S++
Sbjct: 603 SRSVL 607
>gi|268564123|ref|XP_002647095.1| Hypothetical protein CBG03634 [Caenorhabditis briggsae]
Length = 648
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 41/229 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF+ L V EST+L + +V F+ YF SL+ + +E LW+ V I
Sbjct: 348 LFDTFLEVLESTMLNATHVQYVSFIWLYFGSLKEEYEQKVLEHLWQ----VTIR------ 397
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
MP + ++ KK Y + YV
Sbjct: 398 --------------MPRAPADS------KKSQGAAAYLAAFLARAKYVKK---------- 427
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV-KHPVFYSVCQALFSVITYKHSILVDSK 180
V T L E+ W Y+ + + +H FY++ QA F V ++++ ++
Sbjct: 428 DVAFTWLEEIYTWLKRYVVQFGSGSSQILPGLHRHGTFYAISQAFFLVFSFRYKEFAKNQ 487
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
+ ++ ++ + R+V S L PLR + + F++IT + Q+VYC +VI
Sbjct: 488 EILEAMRRWGVGRIVHSPLEPLRYVSKPVARCFSAITRSLQLVYCNHVI 536
>gi|428178330|gb|EKX47206.1| hypothetical protein GUITHDRAFT_107116 [Guillardia theta CCMP2712]
Length = 591
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 46/224 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F+ LL +F+S +L T +V FL FY C R E +
Sbjct: 297 VFSVLLRIFDSRVLTTFRSKYVQFLCFYSCHFR----ERY-------------------- 332
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+++L K+ + R + Y+ S L A F+ +
Sbjct: 333 -------------------SREFLQYLMTKVVERSNPDNERHAAGSYLGSFLARARFVKL 373
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+++ L+ +++W Y+D T E P +H +FY + QAL V+ ++ LV ++
Sbjct: 374 PMVQKSLSLLTKWILEYIDEVSPTVHEP-DPYQHSLFYGLVQALLYVLCFRVPQLVADER 432
Query: 182 NMK-FLQ-SLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
N FL+ L L + LNPL+ N + F I Y+++
Sbjct: 433 NYDTFLRFELQLDVITRCSLNPLKVINQNVSKQFVRICVKYKLL 476
>gi|451849716|gb|EMD63019.1| hypothetical protein COCSADRAFT_37893 [Cochliobolus sativus ND90Pr]
Length = 692
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 125/314 (39%), Gaps = 76/314 (24%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
+ L+A F+S I+PT+ H F++F+F L E F++ +C
Sbjct: 358 YQSLIAQFQSIIIPTYRSRHTQFIIFHFSQLSTDFMERFVD-----------------TC 400
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
H L I ++ P + R S C Y++S + +P
Sbjct: 401 SH----LAIDSNRPP----------------------LLRASACAYLASYIARGAHVPGF 434
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFS---------VIT 170
V++ + + C S L+ + E C+ ++ +Y++ QAL ++T
Sbjct: 435 VVRNVFDLL---C-SQLERLRMLHEPKCTGPDLRRYGTYYAIAQALLYAFCFRWRDLIVT 490
Query: 171 YKHSILVDS-----KKNMKFLQS-LNLTRL-VMSQLNPLRSCNAEIVSHFASITNTYQIV 223
S+ D+ + + ++ +S L + R + +LNPL+ C +IV F I +
Sbjct: 491 SDGSLPTDADIMYHEGDFEWHRSTLEIVRRNIFCKLNPLKICAPDIVKQFGRIAKHLRFT 550
Query: 224 YCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNA---------LDQYSPFSTFLLVRCKS 274
Y ++ N R+ + +++ L I T +D Y PF ++L R K
Sbjct: 551 YVDTLVETNKRVRLARSLASSYLTGIGGRETALTGKKGEEAFLMDAYFPFDPYVLPRSKR 610
Query: 275 IITPEIHCQADPIP 288
+ + + Q P+P
Sbjct: 611 WVEHD-YVQWRPVP 623
>gi|452001532|gb|EMD93991.1| hypothetical protein COCHEDRAFT_1201821 [Cochliobolus
heterostrophus C5]
Length = 897
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 125/314 (39%), Gaps = 76/314 (24%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
+ L+A F+S I+PT+ H F++F+F L E F++ +C
Sbjct: 563 YQSLIAQFQSIIIPTYRSRHTQFILFHFSQLSTDFMERFVD-----------------TC 605
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
H L I ++ P + R S C Y++S + +P
Sbjct: 606 SH----LAIDSNRPP----------------------LLRASACAYLASYIARGAHVPGF 639
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFS---------VIT 170
V++ + + C S L+ + E C+ ++ +Y++ QAL ++T
Sbjct: 640 VVRNVFDLL---C-SQLERLRMLHEPKCTGPDLRRYGTYYAIAQALLYAFCFRWRDLIVT 695
Query: 171 YKHSILVDS-----KKNMKFLQS-LNLTRL-VMSQLNPLRSCNAEIVSHFASITNTYQIV 223
S+ D+ + + ++ +S L + R + +LNPLR C +IV F I +
Sbjct: 696 PDGSLPTDADIMYHEGDFEWHRSTLEIVRRNIFCKLNPLRICAPDIVKQFGRIAKHLRFT 755
Query: 224 YCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNA---------LDQYSPFSTFLLVRCKS 274
Y ++ N R+ + +++ L I T +D Y PF ++L R K
Sbjct: 756 YVDTLVETNKRVRLARSLASSYLTGIGGRETALTGKKGEEAFLMDAYFPFDPYVLPRSKR 815
Query: 275 IITPEIHCQADPIP 288
+ + + Q P+P
Sbjct: 816 WVEHD-YVQWRPVP 828
>gi|356559191|ref|XP_003547884.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Glycine max]
Length = 627
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 13/179 (7%)
Query: 100 IFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFY 159
I R S Y++S L A F+ ++ + + WC++Y D +P H VFY
Sbjct: 366 ITRMSAAAYLASYLTRAKFLSAALVTNIIQSLVDWCYAYCKLRDFD----MNPRAHQVFY 421
Query: 160 SVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNT 219
S CQA+ ++ ++ L+D + L ++ + ++ +L+PL+ C +V F
Sbjct: 422 SGCQAIMYILCFRMRSLMDIPRLKLQLLNMPMEAILKHKLSPLKVCLPTVVVEFLRQAKA 481
Query: 220 YQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
Q+ + ++L + A G I + LD + PF LL + +S I P
Sbjct: 482 AQLFMASESFVFD---DMLESDLSKAFGGI------DRLDMFFPFDPCLLKKSESYIRP 531
>gi|315051944|ref|XP_003175346.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Arthroderma gypseum CBS 118893]
gi|311340661|gb|EFQ99863.1| RNA polymerase I-specific transcription initiation factor rrn3
[Arthroderma gypseum CBS 118893]
Length = 715
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 114/308 (37%), Gaps = 78/308 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F+S ILPT+ H F++F+F A+ + F C
Sbjct: 412 LLAHFKSIILPTYRSRHAQFVLFHFAQ-----------------ASPIFVDRFAAIC--- 451
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
IE + K V I RQ Y++S + +P I+
Sbjct: 452 -------------------IEIILSKSQPV----IIRQYAAAYLASFVARGAHVPGDAIR 488
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL----VDSKK 181
N + + L + + D ++ FYS QALF + ++ L V+++
Sbjct: 489 DVFNLLGSHALALLSSYE-ADCRGPDLRRYSPFYSTAQALFYIFCFRWKDLTNAAVEAEA 547
Query: 182 NMKFLQSLN-------------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
L LN L R + S+LNPL+ C+ IVS FA IT+ + + Y Y
Sbjct: 548 EGNSLPHLNVDEVSFSQEMTNTLHRTIYSKLNPLKVCSPGIVSEFAKITHYFGLFYLYPK 607
Query: 229 IHQNARLNV-----LPIVSTDALGNIIKLNT------VNALDQYSPFSTFLLVRCKSIIT 277
+ N R+ + + ++ D I+ T +D Y PF + + R
Sbjct: 608 LESNKRIRIHNFRGMGSMAMDTTYGTIERETRADDSLAVQMDDYFPFDPYKMPRGSR--- 664
Query: 278 PEIHCQAD 285
H Q D
Sbjct: 665 ---HLQGD 669
>gi|70990320|ref|XP_750009.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus fumigatus Af293]
gi|66847641|gb|EAL87971.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus fumigatus Af293]
Length = 713
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 115/297 (38%), Gaps = 76/297 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F+S ILPT+ H FL+F+F ++ + + F +C
Sbjct: 417 LLSHFQSIILPTYRSRHSQFLLFHFSQ-----------------SSPILVDRFAATCVQ- 458
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
LI P I RQS Y++S + + V++
Sbjct: 459 ----LIFNKMQP---------------------GILRQSAAAYLASFVARGAHISGEVVR 493
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV----- 177
+ + ++L+N L E C ++ FYS QAL + ++ L
Sbjct: 494 DVFDLLG----THLNNLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAAME 549
Query: 178 -DSKKNMKFLQSLNLT----------RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
D+ + + L+ ++T + + S+LNPL+ C+ IVS FA + +Y +
Sbjct: 550 GDTPEQIDELEPEDITFPPSVKEVLHQAIHSKLNPLKVCSPAIVSEFARMAQHLNFMYVF 609
Query: 227 NVIHQNARLNVLPIVSTDALGNI----IKLNTVNA------LDQYSPFSTFLLVRCK 273
+++ N RL V S A+ + ++ T LD Y PF + L R +
Sbjct: 610 SILETNKRLRVSSFRSISAMADPRFSHVERETRAGDDLGYQLDAYFPFDPYQLPRSR 666
>gi|405120075|gb|AFR94846.1| RNA polymerase I transcription factor [Cryptococcus neoformans var.
grubii H99]
Length = 832
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 117/327 (35%), Gaps = 87/327 (26%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL +F ILPT H+PFL+F S + + F+ L +
Sbjct: 442 FQTLLNLFSRQILPTASTQHIPFLLFLTSSFSPAHTDLFLGLLVSQ-------------A 488
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+ +S + + PVS+ + R + Y+ S++ A F+
Sbjct: 489 LYATTSTVPSINSQPVSMNQ-------------------RIAATVYIGSVVCRARFVTDD 529
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK---------- 172
+T L + + L + + + + P+FY+VCQA + ++
Sbjct: 530 QARTVLTYLLAYIDGKLHQSRVNKRHSTDEL--PLFYAVCQAAMLIFCFRWRAFLAGADK 587
Query: 173 -------------HSILVDSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITN 218
S+ + K K++ L+ L + S LNPL CN +VS FA + +
Sbjct: 588 EGDGVLGDMEMDGDSVDDEGKAEGKWMADLDVLQNAITSDLNPLLGCNPTVVSTFAKVAH 647
Query: 219 TYQIVYCYNVIHQNARLNVLPIVSTDALGNII---------------------------- 250
YC+++I N + + S+ AL I
Sbjct: 648 HTNFAYCFSIIEANQQSSHPRSSSSHALSKIAVPASRSSSGAGSSRQDPTFGSQTLPRQA 707
Query: 251 -KLNTVNALDQYSPFSTFLLVRCKSII 276
+LN LD Y PF + L + K I
Sbjct: 708 RQLNVDAGLDSYFPFDPYDLPKSKRFI 734
>gi|159130489|gb|EDP55602.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus fumigatus A1163]
Length = 712
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 115/297 (38%), Gaps = 76/297 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F+S ILPT+ H FL+F+F ++ + + F +C
Sbjct: 416 LLSHFQSIILPTYRSRHSQFLLFHFSQ-----------------SSPILVDRFAATCVQ- 457
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
LI P I RQS Y++S + + V++
Sbjct: 458 ----LIFNKMQP---------------------GILRQSAAAYLASFVARGAHISGEVVR 492
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV----- 177
+ + ++L+N L E C ++ FYS QAL + ++ L
Sbjct: 493 DVFDLLG----THLNNLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAAME 548
Query: 178 -DSKKNMKFLQSLNLT----------RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
D+ + + L+ ++T + + S+LNPL+ C+ IVS FA + +Y +
Sbjct: 549 GDTPEQIDELEPEDITFPPSVKEVLHQAIHSKLNPLKVCSPAIVSEFARMAQHLNFMYVF 608
Query: 227 NVIHQNARLNVLPIVSTDALGNI----IKLNTVNA------LDQYSPFSTFLLVRCK 273
+++ N RL V S A+ + ++ T LD Y PF + L R +
Sbjct: 609 SILETNKRLRVSSFRSISAMADPRFSHVERETRAGDDLGYQLDAYFPFDPYQLPRSR 665
>gi|58266858|ref|XP_570585.1| RNA polymerase I transcription factor [Cryptococcus neoformans var.
neoformans JEC21]
gi|134110684|ref|XP_776169.1| hypothetical protein CNBD2160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258837|gb|EAL21522.1| hypothetical protein CNBD2160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226818|gb|AAW43278.1| RNA polymerase I transcription factor, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 871
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 116/327 (35%), Gaps = 87/327 (26%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL +F ILPT H+PFL+F S + E F+ L +
Sbjct: 481 FQTLLNLFSRQILPTASTQHIPFLLFLTSSFSPAHTELFLGLLVSQ-------------A 527
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+ +S + + PVS+ + R + Y+ S++ A F+
Sbjct: 528 LYATTSTVPSINSQPVSMNQ-------------------RIAATVYIGSVVCRARFVTDD 568
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK---------- 172
+T L + + L + + + + P+FY+VCQA + ++
Sbjct: 569 QARTVLTYLLAYMDGKLHQSRVNKRHSTDEL--PLFYAVCQAAMLIFCFRWRAFLAGADK 626
Query: 173 -------------HSILVDSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITN 218
S+ + K K++ L+ L + S LNPL CN +VS FA + +
Sbjct: 627 EGDGVLGDMEMDGESVDDEGKAEGKWMADLDVLQNAITSDLNPLLGCNPTVVSTFAKVAH 686
Query: 219 TYQIVYCYNVIHQNARLNVLPIVSTDALGNII---------------------------- 250
YC+++I N + + S+ AL
Sbjct: 687 HTNFAYCFSIIEANQQSSHPRSSSSHALSKTAVPASRSSSGAGSNRQDPTFGSQTLPRQA 746
Query: 251 -KLNTVNALDQYSPFSTFLLVRCKSII 276
+LN LD Y PF + L + K I
Sbjct: 747 RQLNVDAGLDSYFPFDPYDLPKSKRFI 773
>gi|302500630|ref|XP_003012308.1| hypothetical protein ARB_01267 [Arthroderma benhamiae CBS 112371]
gi|291175866|gb|EFE31668.1| hypothetical protein ARB_01267 [Arthroderma benhamiae CBS 112371]
Length = 717
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 115/294 (39%), Gaps = 72/294 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F+S ILP++ H F++F+F A+ + F +C
Sbjct: 414 LLAHFQSIILPSYRSRHAQFVLFHFAQ-----------------ASPIFVDRFATTC--- 453
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
IE + K V I RQ Y++S + + VI+
Sbjct: 454 -------------------IEIILSKSQPV----IIRQYAAAYLASFVARGAHVSGDVIR 490
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL----VDSKK 181
+ + S L + + TD ++ FYS QALF + ++ L V+++
Sbjct: 491 DVFSLLGSHVLSLLSSYE-TDCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEA 549
Query: 182 NMKFLQSLN-------------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
L LN L R + S+LNPL+ C+ IV+ FA IT+ + ++Y Y
Sbjct: 550 EGNSLPHLNVDEVSFSQEMTNMLHRTIYSKLNPLKVCSPGIVAEFAKITHYFGLLYLYPK 609
Query: 229 IHQNARLNV-----LPIVSTDALGNIIKLNTVN------ALDQYSPFSTFLLVR 271
+ N R+ + + ++ D + I+ T LD Y PF + + R
Sbjct: 610 LESNKRIRIHSFRGMGSMAMDTMYGTIERETRADDNLAFQLDDYFPFDPYKMPR 663
>gi|119497257|ref|XP_001265389.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Neosartorya fischeri NRRL 181]
gi|119413551|gb|EAW23492.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Neosartorya fischeri NRRL 181]
Length = 713
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 114/297 (38%), Gaps = 76/297 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F+S ILPT+ H FL+F+F ++ + + F +C
Sbjct: 417 LLSHFQSIILPTYRSRHSQFLLFHFSQ-----------------SSPILVDRFAATCVQ- 458
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
LI P I RQS Y++S + + V++
Sbjct: 459 ----LIFNKMQP---------------------GILRQSAAAYLASFVARGAHISGEVVR 493
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV----- 177
+ + ++L+N L E C ++ FYS QAL + ++ L
Sbjct: 494 DVFDLLG----THLNNLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAAME 549
Query: 178 -DSKKNMKFLQSLNLT----------RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
D+ + + L+ +T + V S+LNPL+ C+ IVS FA + +Y +
Sbjct: 550 GDTPEQIDELEPEEITFPPSVKEVLHQAVHSKLNPLKVCSPAIVSEFARMAQHLNFMYVF 609
Query: 227 NVIHQNARLNVLPIVSTDALGNI----IKLNTVNA------LDQYSPFSTFLLVRCK 273
+++ N RL V S A+ + ++ T LD Y PF + L R +
Sbjct: 610 SILETNKRLRVSSFRSISAMADPRFSHVERETRAGDDLGYQLDAYFPFDPYQLPRSR 666
>gi|405947415|gb|EKC17834.1| RNA polymerase I-specific transcription initiation factor RRN3
[Crassostrea gigas]
Length = 557
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 22/210 (10%)
Query: 84 FIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTD 143
F FL ++ N +I+ R + Y++S L A F+P+ + L + W Y +
Sbjct: 138 FTRFLLHQVGNEQIHAEARIASAAYLASFLARASFVPLSTVLPPLKHLLLWAERY--QIE 195
Query: 144 LTDEEACSPVK-----HPVFYSVCQALFSVITYKHSILV--DSKKNMKFLQSLNLTRLVM 196
+ +P + H VFY+V Q ++ YK+S L ++ + + + L + R+V
Sbjct: 196 TISKLGGAPARLDVALHGVFYAVMQGCLYLLCYKNSALGKPEAAGDREVIGEL-VGRIVK 254
Query: 197 SQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVN 256
LNPL+ C ++ F + + ++I N + I S D G N
Sbjct: 255 GPLNPLKFCQDAVLIEFERLGVVQGVA---DIIAAN---EGVAIDSRDVHGG------EN 302
Query: 257 ALDQYSPFSTFLLVRCKSIITPEIHCQADP 286
LD + PF LL + I P A P
Sbjct: 303 RLDDFFPFDPLLLKVSSTYIDPLYQVWAPP 332
>gi|365991487|ref|XP_003672572.1| hypothetical protein NDAI_0K01380 [Naumovozyma dairenensis CBS 421]
gi|343771348|emb|CCD27329.1| hypothetical protein NDAI_0K01380 [Naumovozyma dairenensis CBS 421]
Length = 534
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/326 (19%), Positives = 126/326 (38%), Gaps = 66/326 (20%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
LFN L +F++ +LPT+ + +++F+ +L + ++F+
Sbjct: 264 ALFNTLTTLFKTHVLPTYYTRSIQYIMFHISQQQLELMDSFL------------------ 305
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
LI F P E KKI +++ Y+ S + A +
Sbjct: 306 -------VTLIDIAFSPNEAAE-------KKIKSLQ-----------YLGSYIARAKKLS 340
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
I + ++ W + Y+ + ++ + FY+ Q+L + ++H++ D
Sbjct: 341 RTQIVFVASYLTSWLNRYVIEREEEVDQPGGMERFKQFYAAFQSLCYIFCFRHNLFRDCD 400
Query: 181 KNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARL 235
KF Q R ++S+ NPL+ CN ++ FA I + YC+++I N
Sbjct: 401 GEWECELDKFFQ-----RTIISKFNPLKYCNENVMLMFARIAQHEDVAYCFSIIENNNNE 455
Query: 236 NVLPIV-----STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVT 290
+ I+ S + +K+ TV+ ST+ L + I + + DP+ +
Sbjct: 456 RLRGIIGKVDTSKRDTSDFVKVGTVS--------STWSLATRQQFIDLQSYFPYDPLFLR 507
Query: 291 TNTNRTQNLLIADPVSSKQADHDEDD 316
+ I +S + DE D
Sbjct: 508 NYKRMMKEYYIEWSEASGDLESDESD 533
>gi|190409712|gb|EDV12977.1| DNA independent RNA polymerase I transcription factor
[Saccharomyces cerevisiae RM11-1a]
Length = 627
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 110/264 (41%), Gaps = 56/264 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L +F++ +LPT+ + +++F+ +L + ++F+
Sbjct: 360 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFL------------------- 400
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F E KKI +++ Y+ S + A +
Sbjct: 401 ------VTLIDISFAANEAAE-------KKIKSLQ-----------YLGSYIARAKKLSR 436
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I + ++ W + Y+ + ++ + FY+ QAL + ++H+I D+
Sbjct: 437 TQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDG 496
Query: 182 NM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI--HQNAR 234
N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I + N R
Sbjct: 497 NWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNNER 551
Query: 235 L-NVLPIVSTDALGNIIKLNTVNA 257
L ++ +D N + NT ++
Sbjct: 552 LRGIIGKADSDKKENSAQANTTSS 575
>gi|341889878|gb|EGT45813.1| hypothetical protein CAEBREN_16212 [Caenorhabditis brenneri]
Length = 647
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 35/210 (16%)
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPV-KHPVFYSVCQALFSVITYKHSILVDSKKNMK 184
T L E+ W Y+D + + +H FYS+ QA F V +++ V ++ ++
Sbjct: 431 TWLEEIYTWLRHYVDQFGSGSSQILPGLQRHGTFYSISQAFFLVFAFRYKEFVKDQEMLE 490
Query: 185 FLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTD 244
++ + R+V S L PLR + + F++IT + Q+VYC +VI PI
Sbjct: 491 KIRGWGVGRVVHSPLEPLRYVSKPVARCFSAITRSLQLVYCNHVI---------PIEEVQ 541
Query: 245 ALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNT----------- 293
D PF F L I P + + P+ +T
Sbjct: 542 -----------RPFDDMFPFDGFHLKVSSQFIIP-LMRKFSPLAEDLSTLTKALCWNAAT 589
Query: 294 -NRTQNLLIADPVSSKQADH-DEDDFLMSV 321
++++ L A SS+ D DEDD LM
Sbjct: 590 ADKSEKTLEAVASSSEGLDFLDEDDVLMGT 619
>gi|326473274|gb|EGD97283.1| hypothetical protein TESG_04694 [Trichophyton tonsurans CBS 112818]
Length = 717
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 115/294 (39%), Gaps = 72/294 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F+S ILP++ H F++F+F A+ + F +C
Sbjct: 414 LLAHFQSIILPSYRSRHAQFVLFHFAQ-----------------ASPIFVDRFATTC--- 453
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
IE + K V I RQ Y++S + + VI+
Sbjct: 454 -------------------IEIILSKSQPV----IIRQYAAAYLASFVARGAHVSGDVIR 490
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL----VDSKK 181
+ + S L + + D ++ FYS QALF + ++ L V+++
Sbjct: 491 DVFSLLGSHVLSLLSSYE-ADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEA 549
Query: 182 NMKFLQSLN-------------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
L LN L R + S+LNPL+ C+ +IV+ FA IT+ + ++Y Y
Sbjct: 550 EGNSLPHLNVDEVSFSQEMTNMLHRAIYSKLNPLKVCSPDIVAEFAKITHYFGLLYLYPK 609
Query: 229 IHQNARLNV-----LPIVSTDALGNIIKLNTVN------ALDQYSPFSTFLLVR 271
+ N R+ + + ++ D + I+ T LD Y PF + + R
Sbjct: 610 LESNKRIRIHSFRGMSSMAMDTMYGTIERETRADDNLAIQLDDYFPFDPYKMPR 663
>gi|134055088|emb|CAK43728.1| unnamed protein product [Aspergillus niger]
Length = 691
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 116/290 (40%), Gaps = 75/290 (25%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ L++ F++ ILPT+ H FL+F+F QS
Sbjct: 413 FDLLMSHFQNIILPTYRSRHSQFLLFHFS----------------------------QS- 443
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
S +L+ + F + I N I RQS Y++S + +
Sbjct: 444 ----SPILV----------DRFAAMCTELIFNKTQPAIMRQSAAAYLASFVARGAHISGE 489
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV-- 177
V++ + + +YL++ L E C ++ FYS QAL + ++ L
Sbjct: 490 VVRDVFDLLG----TYLNSLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTA 545
Query: 178 ----DSKKNMKFLQSLN----------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
D+ + L+ + L + + S+LNPL+ C+ IVS FA ++ + ++
Sbjct: 546 ALEGDTPDQVDELEPEDIMFPPSVKEVLHQAIHSKLNPLKVCSPAIVSQFARMSQHFNLM 605
Query: 224 YCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCK 273
Y ++++ N RL I + D LG LD Y PF + L R +
Sbjct: 606 YVFSILETNKRLR-REIRAGDDLG--------YQLDAYFPFDPYQLPRSR 646
>gi|217074922|gb|ACJ85821.1| unknown [Medicago truncatula]
Length = 292
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 20/219 (9%)
Query: 100 IFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFY 159
I R S Y++S L A F+ ++ + + WC +Y D +P H VFY
Sbjct: 32 ITRMSAVAYLASYLSRAKFLSSELVANIIQRLVDWCFAYCKLHDFD----MNPQAHQVFY 87
Query: 160 SVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNT 219
S CQA+ ++ ++ L++ + L + + + +LNPL+ C +V F
Sbjct: 88 SACQAIMYILCFRMKSLMEVPRLKVKLIKMPMELIWKHKLNPLKVCLPSVVEEFLKQAKA 147
Query: 220 YQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPE 279
++ + + ++L + A G I N LD + PF LL + +S + P
Sbjct: 148 ARLFMSAELFIFD---DLLEADLSKAFGGI------NRLDMFFPFDPCLLKKSESYLRPH 198
Query: 280 IHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDDFL 318
+ + T +T + L S ++ +DDF+
Sbjct: 199 F-VRWSKVRTTYDTYANEEL------SDSGSEASDDDFV 230
>gi|212539664|ref|XP_002149987.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Talaromyces marneffei ATCC 18224]
gi|210067286|gb|EEA21378.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Talaromyces marneffei ATCC 18224]
Length = 711
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 106/278 (38%), Gaps = 47/278 (16%)
Query: 10 FESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSL 69
F S ILPT+ H FL+F+F + + F+ + I + I RQS Y+ S
Sbjct: 415 FVSYILPTYRSRHTQFLLFHFSQSTPDLVDKFVTSCMEIINSKSRSPIMRQSAAAYLGSF 474
Query: 70 LIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLN 129
+ + + E L K ++N + + ++C H +R
Sbjct: 475 VARGKHLSSRAVRDIFEMLGKNLSN--LLETYERNC-----------HGPNLRGYGPFYA 521
Query: 130 EMSQ----WCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKF 185
M +C + D T +E + P V T+ ++
Sbjct: 522 SMQALLYIFCFRWRDLTTTAEENDGIEDEDPDLEDV--------TFPEAV---------- 563
Query: 186 LQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVS--- 242
L R + S+LNPL+ C+ IV+ FA I + +Y Y ++ N RL V S
Sbjct: 564 --RDPLYRAIHSRLNPLKICSPAIVTEFARIAHHLGFMYIYTLLESNKRLRVSSFRSITT 621
Query: 243 -TDALGNIIKLNT------VNALDQYSPFSTFLLVRCK 273
+D +I++ T + LD Y PF + L R +
Sbjct: 622 LSDPRFSIVERETRAGNDGADVLDAYFPFDPYQLPRSR 659
>gi|256269931|gb|EEU05189.1| Rrn3p [Saccharomyces cerevisiae JAY291]
gi|259147716|emb|CAY80966.1| Rrn3p [Saccharomyces cerevisiae EC1118]
gi|323332734|gb|EGA74139.1| Rrn3p [Saccharomyces cerevisiae AWRI796]
gi|349579443|dbj|GAA24605.1| K7_Rrn3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764554|gb|EHN06076.1| Rrn3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 627
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
+FN L +F++ +LPT+ + +++F+ +L + ++F I F + A KI
Sbjct: 360 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 419
Query: 56 NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
++ Y+ S + A KK++ +I +V+S L
Sbjct: 420 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 446
Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
+ W + Y+ + ++ + FY+ QAL + ++H+I
Sbjct: 447 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 490
Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
D+ N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I
Sbjct: 491 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 545
Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
+ N RL ++ +D N + NT ++
Sbjct: 546 NNNNERLRGIIGKADSDKKENSAQANTTSS 575
>gi|321258017|ref|XP_003193782.1| RNA polymerase I transcription factor [Cryptococcus gattii WM276]
gi|317460252|gb|ADV21995.1| RNA polymerase I transcription factor, putative [Cryptococcus
gattii WM276]
Length = 871
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 115/327 (35%), Gaps = 87/327 (26%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL +F ILPT H+PFL+F S + + F+ L +
Sbjct: 481 FQTLLNLFSRQILPTASTQHIPFLLFLTSSFSPAHTDLFLGLLVSQ-------------A 527
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+ +S + + PVS+ + R + Y+ S++ A F+
Sbjct: 528 LYATTSTVPSINSQPVSLNQ-------------------RIAATVYIGSVVCRARFVSDD 568
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK---------- 172
+T L + + L + + + + P+FY+VCQA + ++
Sbjct: 569 QARTVLTYLLAYMDGKLHQSRVNKRHSTDEL--PLFYAVCQAAMLIFCFRWRAFLAGADK 626
Query: 173 --HSILVD-----------SKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITN 218
IL D K K++ L+ L + S LNPL CN +VS FA + +
Sbjct: 627 EGDGILGDMEMDGDSVDDEGKAEGKWMADLDVLQNAITSDLNPLLGCNPTVVSTFAKVAH 686
Query: 219 TYQIVYCYNVIHQNARLNVL----------------------------PIVSTDALGNII 250
YC+++I N + + P + L
Sbjct: 687 HTNFAYCFSIIEANQQSSHPRSSSSHALSKSAVPASRSSSGAGSSRQDPTFGSQTLPRQA 746
Query: 251 K-LNTVNALDQYSPFSTFLLVRCKSII 276
+ LN LD Y PF + L R K I
Sbjct: 747 RQLNVDAGLDSYFPFDPYDLPRSKRFI 773
>gi|151941681|gb|EDN60043.1| DNA independent RNA polymerase I transcription factor
[Saccharomyces cerevisiae YJM789]
Length = 627
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
+FN L +F++ +LPT+ + +++F+ +L + ++F I F + A KI
Sbjct: 360 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 419
Query: 56 NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
++ Y+ S + A KK++ +I +V+S L
Sbjct: 420 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 446
Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
+ W + Y+ + ++ + FY+ QAL + ++H+I
Sbjct: 447 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 490
Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
D+ N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I
Sbjct: 491 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 545
Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
+ N RL ++ +D N + NT ++
Sbjct: 546 NNNNERLRGIIGKADSDKKENSAQANTTSS 575
>gi|347948697|pdb|3TJ1|A Chain A, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
gi|347948698|pdb|3TJ1|B Chain B, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
Length = 649
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
+FN L +F++ +LPT+ + +++F+ +L + ++F I F + A KI
Sbjct: 382 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 441
Query: 56 NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
++ Y+ S + A KK++ +I +V+S L
Sbjct: 442 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 468
Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
+ W + Y+ + ++ + FY+ QAL + ++H+I
Sbjct: 469 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 512
Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
D+ N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I
Sbjct: 513 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 567
Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
+ N RL ++ +D N + NT ++
Sbjct: 568 NNNNERLRGIIGKADSDKKENSAQANTTSS 597
>gi|323304168|gb|EGA57945.1| Rrn3p [Saccharomyces cerevisiae FostersB]
Length = 627
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
+FN L +F++ +LPT+ + +++F+ +L + ++F I F + A KI
Sbjct: 360 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 419
Query: 56 NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
++ Y+ S + A KK++ +I +V+S L
Sbjct: 420 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 446
Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
+ W + Y+ + ++ + FY+ QAL + ++H+I
Sbjct: 447 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 490
Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
D+ N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I
Sbjct: 491 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 545
Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
+ N RL ++ +D N + NT ++
Sbjct: 546 NNNNERLRGIIGKADSDKKENSAQANTTSS 575
>gi|402086632|gb|EJT81530.1| hypothetical protein GGTG_01508 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 696
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 117/290 (40%), Gaps = 56/290 (19%)
Query: 5 ELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCH 64
++++ F + ILPT+ H FLVF+F + + F+ L+ RQS
Sbjct: 392 DMISDFVNLILPTYKSRHTQFLVFHFSQYAPELMDLFVGTLFNLAFESNRPMALRQSATA 451
Query: 65 YVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVI 124
Y++S + +P I +N + L CH++ + +H +
Sbjct: 452 YLASYVARGGLVPADIVQNVVNLL-----------------CHHIDGQM-RSH------M 487
Query: 125 KTCLN-EMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNM 183
+ C ++ ++ H Y + + Y C ++T+ I VD +
Sbjct: 488 EGCRGPDLRRYKHLY-------------SLVQALLYIFCFRWRELVTWAPDI-VDQEDLS 533
Query: 184 KFLQ---------SLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR 234
+L +++R++ S+ NPL+ C+ IV+ FA + + +Y Y ++ N R
Sbjct: 534 SYLGHDLEWIPGFRESMSRMIHSRFNPLKVCSPAIVNEFADLARHLKFMYVYPLLESNKR 593
Query: 235 LNVLPIVSTD-ALGNIIKLNTVNALDQ-------YSPFSTFLLVRCKSII 276
+++ VS D + G ++ + D+ Y PF + L K I
Sbjct: 594 VHLSQFVSGDYSTGGALRDTCSDPYDEKALQLEAYFPFDPYQLPISKRWI 643
>gi|344303281|gb|EGW33555.1| hypothetical protein SPAPADRAFT_60895 [Spathaspora passalidarum
NRRL Y-27907]
Length = 672
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 116/310 (37%), Gaps = 78/310 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LFN + ++F+S ILPTH + F++F+ + ++++
Sbjct: 364 LFNTITSLFKSHILPTHFTKSIQFVLFHISQYHPELADSYL------------------- 404
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LLI F P I E R Y+SS + A +
Sbjct: 405 ------VLLIDVAFNPKEILEK------------------RLKAIQYLSSYIARAKQLSR 440
Query: 122 RVIKTCLNEMSQWCHSYL----------DNTDLTDEEACSPVKH-PVFYSVCQALFSVIT 170
I ++ + W Y+ +++ D + ++ +FY+ QAL +
Sbjct: 441 HQIVFVVSYLVGWLDKYIIERECEIADIESSRRNDNKQVGGMERFKLFYATFQALLYIFC 500
Query: 171 YKHSILVDSKKNM----------KFLQSLN----------LTRLVMSQLNPLRSCNAEIV 210
++H L + +++ K QS R ++++ NPL+ C+ +V
Sbjct: 501 FRHDTLFKNGESLPTIDTPSGSFKTKQSSGSEWECDLDKFFQRAIIAKFNPLKFCDETVV 560
Query: 211 SHFASITNTYQIVYCYNVIHQNARLNVLPIVST----DALGNIIKLNTVNALDQYSPFST 266
FA + + YCY++I N R +L + A+GN + L+ Y PF
Sbjct: 561 YIFAKLATKLNVCYCYSIIEHNKRERMLQSNGSMNLPSAVGNFKQKQEFLDLEAYFPFDP 620
Query: 267 FLLVRCKSII 276
+L K I+
Sbjct: 621 MVLPTSKKIV 630
>gi|323336841|gb|EGA78104.1| Rrn3p [Saccharomyces cerevisiae Vin13]
Length = 626
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
+FN L +F++ +LPT+ + +++F+ +L + ++F I F + A KI
Sbjct: 359 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 418
Query: 56 NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
++ Y+ S + A KK++ +I +V+S L
Sbjct: 419 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 445
Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
+ W + Y+ + ++ + FY+ QAL + ++H+I
Sbjct: 446 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 489
Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
D+ N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I
Sbjct: 490 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 544
Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
+ N RL ++ +D N + NT ++
Sbjct: 545 NNNNERLRGIIGKADSDKKENSAQANTTSS 574
>gi|255713300|ref|XP_002552932.1| KLTH0D04840p [Lachancea thermotolerans]
gi|238934312|emb|CAR22494.1| KLTH0D04840p [Lachancea thermotolerans CBS 6340]
Length = 612
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 65/322 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L+++F+S ILPT+ + +++F+ +L + + F+
Sbjct: 344 IFNTLISLFKSHILPTYYTRSIQYILFHVSQQQLELMDAFL------------------- 384
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F P E I+ L Y+ S + A +
Sbjct: 385 ------VTLIDIAFSPNETIEKRIKSL------------------QYIGSFIARAKKLTN 420
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK- 180
I + ++ W + Y+ + + + FY+ QAL V ++H+I D
Sbjct: 421 TQIIFVSSYLTSWLNRYVLEREEEVNQPGGVERFKHFYAAFQALCYVFCFRHAIFRDGDT 480
Query: 181 ---KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNV 237
+ KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I N +
Sbjct: 481 WECEIDKFFQ-----RMVLSKFNPLKYCNENVMMMFARIAQHEGVAYCFSIIENNNNERM 535
Query: 238 LPIVS-TDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRT 296
I+ +D+ G N V S + L + I + + DP+ + T
Sbjct: 536 KGIMGKSDSQG----YNGV--------VSNWSLATRQQFIDLQSYFPYDPLFLKTYKRMM 583
Query: 297 QNLLIADPVSSKQADHDEDDFL 318
++ I S++ + DE D L
Sbjct: 584 RDYYIEWSDVSREYESDESDEL 605
>gi|323308350|gb|EGA61596.1| Rrn3p [Saccharomyces cerevisiae FostersO]
Length = 626
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
+FN L +F++ +LPT+ + +++F+ +L + ++F I F + A KI
Sbjct: 359 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 418
Query: 56 NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
++ Y+ S + A KK++ +I +V+S L
Sbjct: 419 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 445
Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
+ W + Y+ + ++ + FY+ QAL + ++H+I
Sbjct: 446 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 489
Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
D+ N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I
Sbjct: 490 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 544
Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
+ N RL ++ +D N + NT ++
Sbjct: 545 NNNNERLRGIIGKADSDKKENSAQANTTSS 574
>gi|390601104|gb|EIN10498.1| RNA polymerase I-specific transcription initiation factor RRN3
[Punctularia strigosozonata HHB-11173 SS5]
Length = 743
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 60/250 (24%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL++F+ TI+ T + FLVF++ SL + F L
Sbjct: 409 FYNLLSIFDRTIIRTFKSRYTQFLVFWYSSLDPEFSDLFQGML----------------- 451
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
L K + + R + YV+S + A F+
Sbjct: 452 -------------------------LSKALLETDQPAVTRAAATSYVASFVSRARFVDQD 486
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEAC---SPVKHPVFYSVCQALFSVITYKHSILV-- 177
+ + + + S LD + ++ S VFY+V QA+F + ++ L+
Sbjct: 487 GTRKVVALLCNFLKSQLDMFEAVEQTGIGLPSGAHQTVFYAVAQAVFLIFCFRWRDLLAI 546
Query: 178 ---------DSKKNM---KFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVY 224
+S M K++ L+ + R+V S LNPL+ C++ +V FA + + VY
Sbjct: 547 TEEDVDETHESAPPMSSSKWMSELDVMQRVVQSSLNPLKVCSSTVVMQFARVAHATNFVY 606
Query: 225 CYNVIHQNAR 234
CY++I N R
Sbjct: 607 CYSIIEANKR 616
>gi|323347742|gb|EGA82006.1| Rrn3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 577
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 110/264 (41%), Gaps = 56/264 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L +F++ +LPT+ + +++F+ +L + ++F+
Sbjct: 310 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFL------------------- 350
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F E KKI +++ Y+ S + A +
Sbjct: 351 ------VTLIDISFAVNEAAE-------KKIKSLQ-----------YLGSYIARAKKLSR 386
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I + ++ W + Y+ + ++ + FY+ QAL + ++H+I D+
Sbjct: 387 TQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDG 446
Query: 182 NM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI--HQNAR 234
N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I + N R
Sbjct: 447 NWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNNER 501
Query: 235 L-NVLPIVSTDALGNIIKLNTVNA 257
L ++ +D N + NT ++
Sbjct: 502 LRGIIGKADSDKKENSAQANTTSS 525
>gi|6322724|ref|NP_012797.1| Rrn3p [Saccharomyces cerevisiae S288c]
gi|549712|sp|P36070.1|RRN3_YEAST RecName: Full=RNA polymerase I-specific transcription initiation
factor RRN3
gi|486211|emb|CAA81966.1| RRN3 [Saccharomyces cerevisiae]
gi|1403568|emb|CAA96470.1| Rrn3p [Saccharomyces cerevisiae]
gi|285813139|tpg|DAA09036.1| TPA: Rrn3p [Saccharomyces cerevisiae S288c]
gi|392298314|gb|EIW09412.1| Rrn3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 627
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
+FN L +F++ +LPT+ + +++F+ +L + ++F I F + A KI
Sbjct: 360 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 419
Query: 56 NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
++ Y+ S + A KK++ +I +V+S L
Sbjct: 420 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 446
Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
+ W + Y+ + ++ + FY+ QAL + ++H+I
Sbjct: 447 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 490
Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
D+ N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I
Sbjct: 491 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 545
Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
+ N RL ++ +D N + NT ++
Sbjct: 546 NNNNERLRGIIGKADSDKKENSAQANTTSS 575
>gi|169602669|ref|XP_001794756.1| hypothetical protein SNOG_04337 [Phaeosphaeria nodorum SN15]
gi|111066977|gb|EAT88097.1| hypothetical protein SNOG_04337 [Phaeosphaeria nodorum SN15]
Length = 668
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 124/313 (39%), Gaps = 72/313 (23%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF LL+ F STILPT+ H FL+F+F E F + +I R +
Sbjct: 344 LFESLLSQFASTILPTYRSRHTQFLLFHFSQTSADRTEQFAGACSHLAFDQNRPHILRVT 403
Query: 62 CCHYVSSLLIH-AHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
Y+ S + AH P ++ ++++ CH++
Sbjct: 404 AAAYLGSFIARGAHVRPDTVR--------------AVFDLL----CHHLE---------- 435
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS- 179
I+ ++E S C DL ++ +Y++ QAL + ++ L+ +
Sbjct: 436 ---IQRAMHESS--CK----GPDLR--------RYGTYYAIAQALLYLFCFRWRDLIVTP 478
Query: 180 -------------KKNMKFLQSLNLT--RLVMSQLNPLRSCNAEIVSHFASITNTYQIVY 224
+ + + S T R + S+LNPL+ C IV+ FA + + + +Y
Sbjct: 479 DMTTPTDEDIIYHEGDFTWYNSTQDTIRRNIFSKLNPLKICAPTIVAQFARVAHHLRFLY 538
Query: 225 CYNVIHQNARLNVLPIVSTDAL----GNIIKLNTVNA-----LDQYSPFSTFLLVRCKSI 275
Y +I N R+ + +++ L G L+T LD Y PF ++L R K
Sbjct: 539 VYPLIETNKRVRLARSLASGYLHGLGGRETALSTKKGEETFLLDAYFPFDPYVLPRSKRW 598
Query: 276 ITPEIHCQADPIP 288
+ + + P+P
Sbjct: 599 LEQD-YVTWKPVP 610
>gi|326477740|gb|EGE01750.1| hypothetical protein TEQG_00795 [Trichophyton equinum CBS 127.97]
Length = 717
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 114/294 (38%), Gaps = 72/294 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F+S ILP++ H F++F+F A+ + F +C
Sbjct: 414 LLAHFQSIILPSYRSRHAQFVLFHFAQ-----------------ASPIFVDRFATTC--- 453
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
IE + K V I RQ Y++S + + VI+
Sbjct: 454 -------------------IEIILSKSQPV----IIRQYAAAYLASFVARGAHVSGDVIR 490
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL----VDSKK 181
+ + S L + + D ++ FYS QALF + ++ L V+++
Sbjct: 491 DVFSLLGSHVLSLLSSYE-ADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEA 549
Query: 182 NMKFLQSLN-------------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
L LN L R + S+LNPL+ C+ IV+ FA IT+ + ++Y Y
Sbjct: 550 EGNSLPHLNVDEVSFSQEMTNMLHRAIYSKLNPLKVCSPGIVAEFAKITHYFGLLYLYPK 609
Query: 229 IHQNARLNV-----LPIVSTDALGNIIKLNTVN------ALDQYSPFSTFLLVR 271
+ N R+ + + ++ D + I+ T LD Y PF + + R
Sbjct: 610 LESNKRIRIHSFRGMSSMAMDTMYGTIERETRADDNLAIQLDDYFPFDPYKMPR 663
>gi|121703217|ref|XP_001269873.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus clavatus NRRL 1]
gi|119398016|gb|EAW08447.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus clavatus NRRL 1]
Length = 712
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 120/311 (38%), Gaps = 77/311 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F+S ILPT+ H FL+F+F ++ + + F +C
Sbjct: 417 LLSHFQSIILPTYRSRHSQFLLFHFSQ-----------------SSPILVDRFAATCVQ- 458
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
LI P I RQS Y++S + + V++
Sbjct: 459 ----LIFNKMQP---------------------GILRQSAAAYLASFVARGAHISGEVVR 493
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYK------HSIL 176
+ + ++L+N L E C ++ FYS QAL + ++ ++
Sbjct: 494 DVFDLLG----THLNNLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAAVE 549
Query: 177 VDSKKNMKFLQSLNLT----------RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
D+ + + L+ + + + S+LNPL+ C+ IVS FA + +Y +
Sbjct: 550 GDTPEQIDELEPEEIAFPPSVKEVLHQAIHSKLNPLKVCSPAIVSEFARMAQHLNFMYVF 609
Query: 227 NVIHQNARLNVLPIVSTDALGNI----IKLNTVNA------LDQYSPFSTFLLVRCKSII 276
+++ N RL V + A+ + I+ T LD Y PF + L R + +
Sbjct: 610 SILETNKRLRVSSFRNISAMADPRFSQIERETRAGDDLGYQLDAYFPFDPYQLPRSRRWL 669
Query: 277 TPE-IHCQADP 286
+ +H Q P
Sbjct: 670 ENDYVHWQGIP 680
>gi|302666146|ref|XP_003024675.1| hypothetical protein TRV_01138 [Trichophyton verrucosum HKI 0517]
gi|291188742|gb|EFE44064.1| hypothetical protein TRV_01138 [Trichophyton verrucosum HKI 0517]
Length = 717
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 114/294 (38%), Gaps = 72/294 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F+S ILP++ H F++F+F A+ + F +C
Sbjct: 414 LLAHFQSIILPSYRSRHAQFVLFHFAQ-----------------ASPIFVDRFATTC--- 453
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
IE + K V I RQ Y++S + + VI+
Sbjct: 454 -------------------IEIILSKSQPV----IIRQYAAAYLASFVARGAHVSGDVIR 490
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL----VDSKK 181
+ + S L + + D ++ FYS QALF + ++ L V+++
Sbjct: 491 DVFSLLGSHVLSLLSSYE-ADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEA 549
Query: 182 NMKFLQSLN-------------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
L LN L R + S+LNPL+ C+ IV+ FA IT+ + ++Y Y
Sbjct: 550 EGNSLPHLNVDEVSFSQEMTNMLHRTIYSKLNPLKVCSPGIVAEFAKITHYFGLLYLYPK 609
Query: 229 IHQNARLNV-----LPIVSTDALGNIIKLNTVN------ALDQYSPFSTFLLVR 271
+ N R+ + + ++ D + I+ T LD Y PF + + R
Sbjct: 610 LESNKRIRIHSFRGMGSMAMDTMYGTIERETRADDNLAFQLDDYFPFDPYKMPR 663
>gi|327296541|ref|XP_003232965.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Trichophyton rubrum CBS 118892]
gi|326465276|gb|EGD90729.1| hypothetical protein TERG_06956 [Trichophyton rubrum CBS 118892]
Length = 719
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 114/294 (38%), Gaps = 72/294 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F+S ILP++ H F++F+F A+ + F +C
Sbjct: 416 LLAHFQSIILPSYRSRHAQFVLFHFAQ-----------------ASPIFVDRFATTC--- 455
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
IE + K V I RQ Y++S + + VI+
Sbjct: 456 -------------------IEIILSKSQPV----IIRQYAAAYLASFVARGAHVSGDVIR 492
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL----VDSKK 181
+ + S L + + D ++ FYS QALF + ++ L V+++
Sbjct: 493 DVFSLLGSHILSLLSSYE-ADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEA 551
Query: 182 NMKFLQSLN-------------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
L LN L R + S+LNPL+ C+ IV+ FA IT+ + ++Y Y
Sbjct: 552 EGNSLTHLNVDEVSFSQEMTNMLHRAIYSKLNPLKVCSPGIVAEFAKITHYFGLLYLYPK 611
Query: 229 IHQNARLNV-----LPIVSTDALGNIIKLNTVN------ALDQYSPFSTFLLVR 271
+ N R+ + + ++ D + I+ T LD Y PF + + R
Sbjct: 612 LESNKRIRIHSFRGMSSMAMDTMYGTIERETRADDNLAIQLDDYFPFDPYKMPR 665
>gi|401624917|gb|EJS42954.1| rrn3p [Saccharomyces arboricola H-6]
Length = 627
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 99/246 (40%), Gaps = 53/246 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L +F++ +LPT+ + +++F+ +L + ++F+
Sbjct: 359 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFL------------------- 399
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F E KKI ++ Y+ S + A +
Sbjct: 400 ------VTLIDISFAANEAAE-------KKIKSL-----------QYLGSYIARAKKLSR 435
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I + ++ W + Y+ + ++ + FY+ QAL + ++H+I D+
Sbjct: 436 TQIIFVASYLTSWLNRYVIEREEEVDKRGGMERFKHFYAAFQALCYIFCFRHNIFRDTNG 495
Query: 182 NM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLN 236
N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I N
Sbjct: 496 NWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNNER 550
Query: 237 VLPIVS 242
+ I+
Sbjct: 551 LRGIIG 556
>gi|350638121|gb|EHA26477.1| hypothetical protein ASPNIDRAFT_172112 [Aspergillus niger ATCC
1015]
Length = 659
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 125/315 (39%), Gaps = 79/315 (25%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ L++ F++ ILPT+ H FL+F+F QS
Sbjct: 362 FDLLMSHFQNIILPTYRSRHSQFLLFHFS----------------------------QS- 392
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
S +L+ + F + I N I RQS Y++S + +
Sbjct: 393 ----SPILV----------DRFAAMCTELIFNKTQPAIMRQSAAAYLASFVARGAHISGE 438
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV-- 177
V++ + + +YL++ L E C ++ FYS QAL + ++ L
Sbjct: 439 VVRDVFDLLG----TYLNSLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTA 494
Query: 178 ----DSKKNMKFLQSLN----------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
D+ + L+ + L + + S+LNPL+ C+ IVS FA ++ + ++
Sbjct: 495 ALEGDTPDQVDELEPEDIMFPPSVKEVLHQAIHSKLNPLKVCSPAIVSQFARMSQHFNLM 554
Query: 224 YCYNVIHQNARLNVLPIVSTDALGNIIKLNTVN-----------ALDQYSPFSTFLLVRC 272
Y ++++ N RL V S A+ + + + V LD Y PF + L R
Sbjct: 555 YVFSILETNKRLRVSSYRSIGAMAD-PRFSQVEREIRAGDDLGYQLDAYFPFDPYQLPRS 613
Query: 273 KSIITPE-IHCQADP 286
+ + + +H + P
Sbjct: 614 RRWVENDYVHWRGIP 628
>gi|366987231|ref|XP_003673382.1| hypothetical protein NCAS_0A04370 [Naumovozyma castellii CBS 4309]
gi|342299245|emb|CCC66995.1| hypothetical protein NCAS_0A04370 [Naumovozyma castellii CBS 4309]
Length = 606
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 53/247 (21%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
LFN L +F++ IL T+ + +++F+ +L + ++F+
Sbjct: 340 TLFNILTTLFKTHILSTYYTRSIQYIMFHVSQQQLELMDSFL------------------ 381
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
LI F P E KKI +++ Y+ S + A +
Sbjct: 382 -------VTLIDIAFSPSESSE-------KKIKSLQ-----------YLGSYIARAKKLS 416
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
I + ++ W + Y+ + ++ + FY+ QAL + ++HSI D++
Sbjct: 417 RTQIIFVASYLTSWLNRYVIEREEEVDQPGGMERFKHFYATFQALCYIFCFRHSIFRDTE 476
Query: 181 KNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARL 235
KF Q R+++S+ NPL+ CN ++ FA IT + YC+++I N
Sbjct: 477 GAWECELDKFFQ-----RMIISKFNPLKYCNENVMLMFARITQHEDVAYCFSIIENNNNE 531
Query: 236 NVLPIVS 242
+ I+
Sbjct: 532 RLRGIIG 538
>gi|403213789|emb|CCK68291.1| hypothetical protein KNAG_0A06300 [Kazachstania naganishii CBS
8797]
Length = 650
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 129/324 (39%), Gaps = 60/324 (18%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L +F++ +LPT+ V +++F+ +L + ++F+
Sbjct: 378 VFNTLTTLFKTHVLPTYYTRSVQYIMFHVSQQQLELMDSFL------------------- 418
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F P E KKI +++ Y+ S + A +
Sbjct: 419 ------VTLIDISFSPNETVE-------KKIKSLQ-----------YLGSYIARAKKLSR 454
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
I + ++ W + Y + + + FY+ QAL V ++ + D
Sbjct: 455 TQIIFVASYLTSWLNRYAIEREEEVNQPGGMERFKHFYAAFQALCYVFCFRRDMFRDLDG 514
Query: 182 NM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLN 236
N KF Q R+++S+ NPL+ CN ++ FA IT I YC+++I N
Sbjct: 515 NWECELDKFFQ-----RMIISKFNPLKYCNENVMLMFARITQHEDIAYCFSIIENNNHER 569
Query: 237 VLPIVSTDALGNIIKLNT--VNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTN 294
+ IV ++ K T +++ + + T+ L + I + + DP+ +
Sbjct: 570 LRGIVGK---ADLSKTGTAEISSSNGSASTPTWSLATRQQFIDLQSYFPYDPLFLKNYKG 626
Query: 295 RTQNLLI--ADPVSSKQADHDEDD 316
++ I ++ ++DHD DD
Sbjct: 627 IMRDYFIEWSEVSGDLESDHDSDD 650
>gi|255950566|ref|XP_002566050.1| Pc22g21540 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593067|emb|CAP99442.1| Pc22g21540 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 690
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 121/298 (40%), Gaps = 47/298 (15%)
Query: 11 ESTILPTHGITHVPFLVFY--FCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSS 68
+ IL G+ + F F F S L EN ++ L + I +R +
Sbjct: 362 KDNILKVDGMIDILFEYFSPPFTSGSLDDKENALDLLLSHFQTI-ILPTYRSRHSQF--- 417
Query: 69 LLIH-AHFMPVSI---GENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVI 124
LL H + PV I F++ ++ K+ I RQS Y++S + + V+
Sbjct: 418 LLFHFSQASPVLIDRFASTFVQLIFNKLQP----GILRQSAAAYLASFVARGAHISGEVV 473
Query: 125 KTCLNEMSQWCHSYLDNTDLTDEEACSPV---KHPVFYSVCQALFSVITYK------HSI 175
+ + ++L++ + E +C ++ FYS QAL + ++ +I
Sbjct: 474 RDVFD----LLLTHLNSLRMDYEGSCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAAI 529
Query: 176 LVDSKKNMKFLQSLNLT----------RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYC 225
D+ + L+ + + + S+LNPL+ C+ IV+ FA I + +Q +Y
Sbjct: 530 DGDTADQVDELEPGQIAFPPNIKEFLHKCIYSRLNPLKVCSPAIVAEFARIAHHFQFLYV 589
Query: 226 YNVIHQNARLNVLPIVSTDAL--------GNIIKL--NTVNALDQYSPFSTFLLVRCK 273
Y ++ N R+ V + L G I+ N LD Y PF + L R +
Sbjct: 590 YPLLETNKRIRVTAFRNLSNLSDPRFSHVGREIRAGDNVGYQLDAYFPFDPYQLPRSR 647
>gi|317026109|ref|XP_001388984.2| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus niger CBS 513.88]
Length = 710
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 119/301 (39%), Gaps = 78/301 (25%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ L++ F++ ILPT+ H FL+F+F QS
Sbjct: 413 FDLLMSHFQNIILPTYRSRHSQFLLFHFS----------------------------QS- 443
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
S +L+ + F + I N I RQS Y++S + +
Sbjct: 444 ----SPILV----------DRFAAMCTELIFNKTQPAIMRQSAAAYLASFVARGAHISGE 489
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV-- 177
V++ + + +YL++ L E C ++ FYS QAL + ++ L
Sbjct: 490 VVRDVFDLLG----TYLNSLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTA 545
Query: 178 ----DSKKNMKFLQSLN----------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
D+ + L+ + L + + S+LNPL+ C+ IVS FA ++ + ++
Sbjct: 546 ALEGDTPDQVDELEPEDIMFPPSVKEVLHQAIHSKLNPLKVCSPAIVSQFARMSQHFNLM 605
Query: 224 YCYNVIHQNARLNVLPIVSTDALGNIIKLNTVN-----------ALDQYSPFSTFLLVRC 272
Y ++++ N RL V S A+ + + + V LD Y PF + L R
Sbjct: 606 YVFSILETNKRLRVSSYRSIGAMAD-PRFSQVEREIRAGDDLGYQLDAYFPFDPYQLPRS 664
Query: 273 K 273
+
Sbjct: 665 R 665
>gi|425771226|gb|EKV09675.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Penicillium digitatum Pd1]
gi|425776779|gb|EKV14983.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Penicillium digitatum PHI26]
Length = 692
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 114/297 (38%), Gaps = 76/297 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F++ ILPT+ H FL+F+F + + F
Sbjct: 400 LLSHFQTIILPTYRSRHSQFLLFHFSQASPVLVDRF------------------------ 435
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
F++ ++ K+ I RQS Y++S + + V++
Sbjct: 436 ---------------ASTFVQLIFNKLQP----GILRQSAAAYLASFVARGAHISGEVVR 476
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPV---KHPVFYSVCQALFSVITYKHSILV----- 177
+ ++L++ + E++C ++ FYS QAL + ++ L
Sbjct: 477 DVFD----LLLTHLNSLRMDYEDSCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAAVD 532
Query: 178 -DSKKNMKFLQSLNLT----------RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
D+ + L+ + + + S+LNPL+ C+ IV+ FA I + +Q +Y Y
Sbjct: 533 GDTPDQVDGLEPGQIAFPPNMKEFLHKCIYSRLNPLKVCSPAIVAEFARIAHHFQFLYVY 592
Query: 227 NVIHQNARLNVLPIVSTDAL--------GNIIKL--NTVNALDQYSPFSTFLLVRCK 273
++ N R+ V + L G I+ N LD Y PF + L R +
Sbjct: 593 PLLETNKRIRVTAFRNLSNLSDPRFSHVGREIRAGDNIGYQLDAYFPFDPYQLPRSR 649
>gi|83765705|dbj|BAE55848.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870996|gb|EIT80165.1| RNA polymerase I transcription factor [Aspergillus oryzae 3.042]
Length = 706
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 123/310 (39%), Gaps = 75/310 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F+S ILPT+ H FL+F+F ++ + + F +C
Sbjct: 387 LLSHFQSIILPTYRSRHSQFLLFHFSQ-----------------SSPDLVDRFTTAC--- 426
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
IE ++ K+ I RQS Y++S + + +++
Sbjct: 427 -------------------IEIVFNKMQPA----ITRQSAAAYLASFVARGAHISGEIVR 463
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSP--VKHPVFYSVCQALFSVITYKHSILV------ 177
+ D DL + P ++ FYS QAL + ++ L
Sbjct: 464 DVFGLLGGHLR---DLRDLYEPSCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAATEG 520
Query: 178 DSKKNMKFLQSLNLT----------RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYN 227
DS + + L+ ++T + + S+LNPL+ C+ IVS FA ++ ++Y ++
Sbjct: 521 DSIEQVDELEIEDITFPPMVKEALHQTIYSKLNPLKVCSPAIVSEFARMSQHLNLMYVFS 580
Query: 228 VIHQNARLNVLPIVSTDALGN----IIKLNTVNA------LDQYSPFSTFLLVRCKSIIT 277
++ N R+ + + AL + +++ T LD Y PF + L R + +
Sbjct: 581 ILETNKRIRMTSFRNLAALADPRFSLVERETRAGDDLGYQLDAYFPFDPYQLPRSRHWVE 640
Query: 278 PE-IHCQADP 286
+ IH + P
Sbjct: 641 ADYIHWRGIP 650
>gi|238483529|ref|XP_002373003.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus flavus NRRL3357]
gi|317139921|ref|XP_001817850.2| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus oryzae RIB40]
gi|220701053|gb|EED57391.1| RNA polymerase I specific transcription initiation factor RRN3
[Aspergillus flavus NRRL3357]
Length = 701
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 123/310 (39%), Gaps = 75/310 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F+S ILPT+ H FL+F+F ++ + + F +C
Sbjct: 409 LLSHFQSIILPTYRSRHSQFLLFHFSQ-----------------SSPDLVDRFTTAC--- 448
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
IE ++ K+ I RQS Y++S + + +++
Sbjct: 449 -------------------IEIVFNKMQPA----ITRQSAAAYLASFVARGAHISGEIVR 485
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSP--VKHPVFYSVCQALFSVITYKHSILV------ 177
+ D DL + P ++ FYS QAL + ++ L
Sbjct: 486 DVFGLLGGHLR---DLRDLYEPSCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAATEG 542
Query: 178 DSKKNMKFLQSLNLT----------RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYN 227
DS + + L+ ++T + + S+LNPL+ C+ IVS FA ++ ++Y ++
Sbjct: 543 DSIEQVDELEIEDITFPPMVKEALHQTIYSKLNPLKVCSPAIVSEFARMSQHLNLMYVFS 602
Query: 228 VIHQNARLNVLPIVSTDALGN----IIKLNTVNA------LDQYSPFSTFLLVRCKSIIT 277
++ N R+ + + AL + +++ T LD Y PF + L R + +
Sbjct: 603 ILETNKRIRMTSFRNLAALADPRFSLVERETRAGDDLGYQLDAYFPFDPYQLPRSRHWVE 662
Query: 278 PE-IHCQADP 286
+ IH + P
Sbjct: 663 ADYIHWRGIP 672
>gi|358366879|dbj|GAA83499.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus kawachii IFO 4308]
Length = 710
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 119/301 (39%), Gaps = 78/301 (25%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ L++ F++ ILPT+ H FL+F+F QS
Sbjct: 413 FDLLMSHFQNIILPTYRSRHSQFLLFHFS----------------------------QS- 443
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
S +L+ + F + I N I RQS Y++S + +
Sbjct: 444 ----SPILV----------DRFAAMCTELIFNKTQPAIMRQSAAAYLASFVARGAHISGE 489
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILV-- 177
V++ + + +YL++ L E C ++ FYS QAL + ++ L
Sbjct: 490 VVRDVFDLLG----TYLNSLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTA 545
Query: 178 ----DSKKNMKFLQSLN----------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
D+ + L+ + L + + S+LNPL+ C+ IVS FA ++ + ++
Sbjct: 546 ALEGDTPDQVDELEPEDIMFPPSVKEVLHQAIHSKLNPLKVCSPAIVSQFARMSQHFNLM 605
Query: 224 YCYNVIHQNARLNVLPIVSTDALGNIIKLNTVN-----------ALDQYSPFSTFLLVRC 272
Y ++++ N RL V S A+ + + + V LD Y PF + L R
Sbjct: 606 YVFSILETNKRLRVSSYRSIGAMAD-PRFSQVEREIRAGDDLGYQLDAYFPFDPYQLPRS 664
Query: 273 K 273
+
Sbjct: 665 R 665
>gi|389633975|ref|XP_003714640.1| hypothetical protein MGG_01654 [Magnaporthe oryzae 70-15]
gi|351646973|gb|EHA54833.1| hypothetical protein MGG_01654 [Magnaporthe oryzae 70-15]
gi|440474551|gb|ELQ43288.1| RNA polymerase I-specific transcription initiation factor rrn3
[Magnaporthe oryzae Y34]
gi|440479746|gb|ELQ60494.1| RNA polymerase I-specific transcription initiation factor rrn3
[Magnaporthe oryzae P131]
Length = 692
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 114/293 (38%), Gaps = 56/293 (19%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+ +L++ F + +LPT+ H FLVF+F + + F+ L+ RQS
Sbjct: 389 VLGDLISDFVNLVLPTYKSRHTQFLVFHFSQYSPELMDLFVGTLFNMAFESNRPMALRQS 448
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVS-SLLIHAHFMP 120
Y++S + +P I N +E L CH+V + HA
Sbjct: 449 ATAYLASYVARGAAVPAEIVRNVVELL-----------------CHHVDVQMRNHAD--- 488
Query: 121 VRVIKTCLN-EMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS 179
C ++ ++ H Y C + + Y C ++ + ++ S
Sbjct: 489 -----GCRGPDLRRYKHLY-----------C--LVQALLYIFCFRWRELVAWAPELVDPS 530
Query: 180 KKNMKFLQSL--------NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQ 231
+K+ L +++R++ S+ NPLR C+ IV FA + +Y + ++
Sbjct: 531 EKSSYLGHDLEWIPGFKESMSRIIYSKFNPLRVCSPGIVHEFADHARLLRFMYVFPLLES 590
Query: 232 NARLNVLPIVSTD-ALGNIIKLNTVNALDQ-------YSPFSTFLLVRCKSII 276
N R+++ S D + G ++ + D+ Y PF + L K I
Sbjct: 591 NKRIHLSQFASGDYSTGGALRDTCYDPYDESGLQLEAYFPFDPYQLPTSKRWI 643
>gi|328860339|gb|EGG09445.1| hypothetical protein MELLADRAFT_34470 [Melampsora larici-populina
98AG31]
Length = 511
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 99/257 (38%), Gaps = 77/257 (29%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYN---- 56
+ F+ LL+ FES IL T H F++F++ S + +F + L + +Y
Sbjct: 252 LFFDVLLSSFESCILRTQRTRHTQFVIFWYAS----VHPDFADSLLATLVECALYAYDDS 307
Query: 57 ----IFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSL 112
+ R + Y++SL+ A + I +Q+ H VS
Sbjct: 308 THPIVTRVASLGYIASLVSRARY------------------------IDKQTTRHVVS-- 341
Query: 113 LIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK 172
L+ A V + N + W YS+ QA+F + ++
Sbjct: 342 LLCARLEAGLVGEGNGNSYALW------------------------YSIAQAVFYIFCFR 377
Query: 173 HSILV--------------DSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASIT 217
L+ K+ ++L L L R V S LNPL++C +VS FA +
Sbjct: 378 WKDLLVGEDEEIEDEDSLSPGKQVGRWLTGLKVLERAVSSHLNPLKACAPTVVSQFAKVA 437
Query: 218 NTYQIVYCYNVIHQNAR 234
+ +YCYN++ N R
Sbjct: 438 HQTNFIYCYNILRSNDR 454
>gi|358059753|dbj|GAA94522.1| hypothetical protein E5Q_01174 [Mixia osmundae IAM 14324]
Length = 888
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 60/252 (23%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+F+ LL F++ IL T HV FL+F+ SL ++F L ++I +F+
Sbjct: 526 AVFDALLTSFDTHILQTFNTRHVQFLLFWSVSLSPEYTDDFTGALIERI-------LFKT 578
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
+Y+ R + Y+ S + A F
Sbjct: 579 DAPNYI-----------------------------------RVASAAYLGSFVSRAKFFD 603
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV--KHPVFYSVCQALFSVITYK-HSILV 177
+T + M Q+ L + + T P ++ VFY+V QA+ + ++ +L+
Sbjct: 604 QDGARTVVRIMCQYISEQLSHLEPTQSGYVIPAYAQYTVFYAVVQAVMYIFCFRWRELLL 663
Query: 178 DSKKNMKFLQSLN---------------LTRLVMSQLNPLRSCNAEIVSHFASITNTYQI 222
+ + + S L V S LNPL C+A +V FA I+++ +
Sbjct: 664 EDEDPVGEAMSPEMGPTGARVWPPELDALKAAVDSPLNPLAICSAPVVEQFARISHSTGL 723
Query: 223 VYCYNVIHQNAR 234
+YCY V+ N R
Sbjct: 724 MYCYTVLETNKR 735
>gi|67516061|ref|XP_657916.1| hypothetical protein AN0312.2 [Aspergillus nidulans FGSC A4]
gi|40746562|gb|EAA65718.1| hypothetical protein AN0312.2 [Aspergillus nidulans FGSC A4]
gi|259489458|tpe|CBF89746.1| TPA: RNA polymerase I specific transcription initiation factor RRN3
superfamily (AFU_orthologue; AFUA_1G02590) [Aspergillus
nidulans FGSC A4]
Length = 666
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 89/203 (43%), Gaps = 33/203 (16%)
Query: 100 IFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHP 156
I RQS Y++S + + V++ + + ++L+N L E +C +
Sbjct: 421 ILRQSAAAYLASFVARGAHISSEVVRDVFDLLG----THLNNLRLDYEPSCRGPDLRRFG 476
Query: 157 VFYSVCQALFSVITYK------HSILVDSKKNMKFLQSLNLT----------RLVMSQLN 200
FYS QAL + ++ +I D+ + + L+ ++T + ++S+LN
Sbjct: 477 PFYSTAQALLYIFCFRWRDLTTAAIEGDTPEQIDELEPEDITFPPSIRDVLHKAILSKLN 536
Query: 201 PLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNI----IKLNTVN 256
PL+ C+ IVS FA ++ +Y + ++ N RL + + AL + ++ T
Sbjct: 537 PLKVCSPAIVSQFARMSQHLNFIYVFTILETNKRLRMSTYRNIAALSDPRYSHVERETRA 596
Query: 257 A------LDQYSPFSTFLLVRCK 273
LD Y PF + L R +
Sbjct: 597 GDDLGYQLDAYFPFDPYQLPRSR 619
>gi|221486175|gb|EEE24445.1| transcription initiation factor ia, putative [Toxoplasma gondii GT1]
Length = 3012
Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 36/221 (16%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
VL EL+ VF +LP H +V FLVFY +LR+ + L++ + + + + + R+
Sbjct: 997 VLVYELMDVFVEVVLPVHKCKYVQFLVFYLANLRVEWAGRLMSLLFRMLFDRQQHMLLRR 1056
Query: 61 SCCHYVSSLLIHAHFMP---VSIG-ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHA 116
Y+SS L A +P V + +F++ L + N RQ + LL
Sbjct: 1057 ISAVYISSFLCRALLVPPRFVRLALHHFLQLLHRGFLMTGTPNAPRQQ--QRLLGLLRAQ 1114
Query: 117 HFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
H +T N SP+ +FY+VCQ+ ++ Y L
Sbjct: 1115 H-------QTVYNPE-------------------SPLA--LFYTVCQSCCYILCYHLDAL 1146
Query: 177 VDSKKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFAS 215
S ++ FL+ N + L+ S L PL I F +
Sbjct: 1147 AKSAPSLAFLKERNTSVAALLTSPLRPLMHIKRGIAREFVA 1187
>gi|237834485|ref|XP_002366540.1| hypothetical protein TGME49_038880 [Toxoplasma gondii ME49]
gi|211964204|gb|EEA99399.1| hypothetical protein TGME49_038880 [Toxoplasma gondii ME49]
gi|221503672|gb|EEE29363.1| transcription initiation factor ia, putative [Toxoplasma gondii VEG]
Length = 3011
Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 36/221 (16%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
VL EL+ VF +LP H +V FLVFY +LR+ + L++ + + + + + R+
Sbjct: 997 VLVYELMDVFVEVVLPVHKCKYVQFLVFYLANLRVEWAGRLMSLLFRMLFDRQQHMLLRR 1056
Query: 61 SCCHYVSSLLIHAHFMP---VSIG-ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHA 116
Y+SS L A +P V + +F++ L + N RQ + LL
Sbjct: 1057 ISAVYISSFLCRALLVPPRFVRLALHHFLQLLHRGFLMTGTPNAPRQQ--QRLLGLLRAQ 1114
Query: 117 HFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
H +T N SP+ +FY+VCQ+ ++ Y L
Sbjct: 1115 H-------QTVYNPE-------------------SPLA--LFYTVCQSCCYILCYHLDAL 1146
Query: 177 VDSKKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFAS 215
S ++ FL+ N + L+ S L PL I F +
Sbjct: 1147 AKSAPSLAFLKERNTSVAALLTSPLRPLMHIKRGIAREFVA 1187
>gi|389746738|gb|EIM87917.1| RNA polymerase I-specific transcription initiation factor RRN3
[Stereum hirsutum FP-91666 SS1]
Length = 875
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 99/256 (38%), Gaps = 68/256 (26%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ LL++F+ TIL T + FL+FY SL + F
Sbjct: 466 FHTLLSIFDRTILLTFKSRYTQFLLFYLTSLDPEFADTF--------------------- 504
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+ L+H K + + ++ + R + YV+S + A F+
Sbjct: 505 ----TGELVH-----------------KALFSPELPVVTRAASASYVASFVSRARFVGRG 543
Query: 123 VIKTCLNEMSQWCHSYLDNTDL------TDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
+ + M +W ++ ++ + +P+ VFY+V QAL + ++ L
Sbjct: 544 WTREVVGLMGRWLRGQVEGHEMMMVGLEVGVQGLAPLN--VFYAVAQALLLIFCFRWRDL 601
Query: 177 --------------VDSKK---NMKFLQSLNL-TRLVMSQLNPLRSCNAEIVSHFASITN 218
VD++ K+++ L + R+V LNPL+ C+ +V FA +
Sbjct: 602 LEEEEEDGENGDADVDAEGPSGGRKWMEELGIVQRMVTCSLNPLKFCSENVVIQFARVAQ 661
Query: 219 TYQIVYCYNVIHQNAR 234
VY Y +I N R
Sbjct: 662 AAGFVYVYPIIEANRR 677
>gi|367008530|ref|XP_003678766.1| hypothetical protein TDEL_0A02230 [Torulaspora delbrueckii]
gi|359746423|emb|CCE89555.1| hypothetical protein TDEL_0A02230 [Torulaspora delbrueckii]
Length = 616
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 110/286 (38%), Gaps = 59/286 (20%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN + +F++ +LPT+ + +++F+ ++ + ++F+
Sbjct: 352 IFNTITTLFKTHVLPTYFTKSIQYIMFHISQQQIELMDSFL------------------- 392
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
LI F P E I+ L Y+ S + A +
Sbjct: 393 ------VTLIDISFSPTETAETRIKSL------------------QYLGSYIARAKKLSR 428
Query: 122 RVIKTCLNEMSQWCHSY-LDNTDLTDE-EACSPVKHPVFYSVCQALFSVITYKHSILVDS 179
I + ++ W + Y L+ + D+ KH FY+ Q+L + +++ + D
Sbjct: 429 TQIIFVASYLTSWLNRYVLEREEEVDQPGGMDRFKH--FYAAFQSLCYIFCFRYQLFRDG 486
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
N + R+V+S+ NPL+ CN ++ FA I+ + YC+++I N +
Sbjct: 487 DGNWECELEKFFQRMVISKFNPLKYCNENVMLMFARISQHEDVAYCFSIIENNNNQRLRG 546
Query: 240 IVS---TDALG---------NIIKLNTVNALDQYSPFSTFLLVRCK 273
I+ TD G ++ L Y P+ +L R K
Sbjct: 547 IIGRGDTDRKGAYSSAAMTWSLATRQQFIDLQSYFPYDPLILERYK 592
>gi|380475334|emb|CCF45304.1| RNA polymerase I specific transcription initiation factor RRN3
[Colletotrichum higginsianum]
Length = 689
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 99/243 (40%), Gaps = 26/243 (10%)
Query: 69 LLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCL 128
LL H M + + F+ L + + RQ+ Y++ + +P +++T
Sbjct: 411 LLFHFGQMSARLRDTFVGSLMHIFGSQNRPSFVRQAAATYLAGFMARGAHVPSDLVRTVF 470
Query: 129 NEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKN------ 182
+ + Y D D +H ++Y+ QA + ++ L+ S
Sbjct: 471 ALLLKQMQIYRLKHD-PDARGPDLRRHQIYYAQVQAALYMFCFRWRDLIVSTPEFVDRDD 529
Query: 183 --------MKFLQSL--NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQN 232
++++Q + L+ V ++NPL+ C IV FA++ + ++Y + + +N
Sbjct: 530 PASYLGHELEWMQGMREELSASVYCKMNPLKICAPAIVEEFATLAHKLGLMYIFPRVEEN 589
Query: 233 ARLNVLPIVS-TDALGNIIKLNTVNA-------LDQYSPFSTFLLVRCKSIITPE-IHCQ 283
R+ + VS T +G ++ A LD Y PF + L K + + +H Q
Sbjct: 590 KRIRLSQFVSDTYGMGGALRDTGSGAQDEEAYQLDPYFPFDPYQLPVSKRWVQDDYVHYQ 649
Query: 284 ADP 286
A P
Sbjct: 650 AVP 652
>gi|46125417|ref|XP_387262.1| hypothetical protein FG07086.1 [Gibberella zeae PH-1]
Length = 688
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 110/276 (39%), Gaps = 36/276 (13%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F LL FE +LPT+ H FL+F+F + + + F L N +Q+
Sbjct: 386 MFTILLREFEYMVLPTYKSRHTQFLIFHFAQMHDRLTDAFCGQLITTAFKSNTANSTKQA 445
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S + +P S+ + L + ++ IY + C H ++ V
Sbjct: 446 AASYLASFVARGARLPGSLIRSIFGLL---LHHLDIYRKKYEPLCRGPDLRRFHPYYSLV 502
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ + +C + D + E+ P + P Y + Q + + T +
Sbjct: 503 QAT------LYIFCFRWQDLI-VVAPESADP-EDPASY-IGQEMEWMGTCRR-------- 545
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP-I 240
+L+ + +LNPL+ C IV FA I + +Y Y +I N R+ + +
Sbjct: 546 --------DLSAQIFGKLNPLKVCAPSIVEEFARIAHRLNFMYIYPLIESNKRIRLSQYL 597
Query: 241 VSTDALGNIIK-------LNTVNALDQYSPFSTFLL 269
+T + G ++ + + LD Y PF + L
Sbjct: 598 TATYSTGGALRDAGYDMQDESFHQLDPYFPFDPYQL 633
>gi|218198785|gb|EEC81212.1| hypothetical protein OsI_24246 [Oryza sativa Indica Group]
Length = 622
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 97/279 (34%), Gaps = 58/279 (20%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ L +F +++L H F++FY CSL
Sbjct: 308 FDILKTIFRASVLRVHKSKFAQFIMFYACSLD---------------------------- 339
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
P G F FL + +I R S YV S L A F+
Sbjct: 340 --------------PEICGLEFALFLSDIFIKKEEDSISRMSAVSYVGSYLSRARFISAD 385
Query: 123 VIKTCLNEMSQWCHSYLD---NTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS 179
+ L + WC Y D N +T P+ H +FY+ CQA+ ++ ++ ++D
Sbjct: 386 TVVGILKRLVDWCVDYCDLQNNIGIT----TKPINHQIFYASCQAVMYILCFRLRSIMDY 441
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
L ++ ++ L PL+ C IV F ++ +N + + L
Sbjct: 442 PNLKAQLFNMPFGYILTHPLEPLKVCLPSIVDEFLRQAKAARL---FNASVHSEFEDALE 498
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ G + N LD + PF +LL + P
Sbjct: 499 SDLSKTFGGM------NRLDMFFPFDPYLLKESDRYMRP 531
>gi|401404730|ref|XP_003881815.1| conserved hypothetical protein [Neospora caninum Liverpool]
gi|325116229|emb|CBZ51782.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 3087
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 36/221 (16%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
VL EL+ VF +LP H +V FLVFY +LR+ + L++ + + + + + R+
Sbjct: 1106 VLVYELMDVFIEVVLPVHKCKYVQFLVFYLANLRVEWAGRLMSLLFRMLFDRQQHMLLRR 1165
Query: 61 SCCHYVSSLLIHAHFMP---VSIG-ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHA 116
Y+SS L A +P V + +F++ L + N RQ + LL
Sbjct: 1166 ISAVYISSFLCRALLVPPRFVRLALHHFLQLLHRGFLMTGTPNAARQQ--QRLLGLLRAQ 1223
Query: 117 HFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
H +T N SP+ +FY+VCQ+ ++ Y L
Sbjct: 1224 H-------QTVYNPE-------------------SPLA--LFYTVCQSCCYILCYHLDAL 1255
Query: 177 VDSKKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFAS 215
+ ++ FL+ N + L+ S L PL I F +
Sbjct: 1256 AKTAPSLAFLKERNTSVAALLTSPLRPLMHIKRGIAREFVA 1296
>gi|297826945|ref|XP_002881355.1| RNA polymerase I specific transcription initiation factor RRN3
family protein [Arabidopsis lyrata subsp. lyrata]
gi|297327194|gb|EFH57614.1| RNA polymerase I specific transcription initiation factor RRN3
family protein [Arabidopsis lyrata subsp. lyrata]
Length = 614
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 54/215 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F+ LL FE+ IL T+ FL+FY CSL E K A+ K+ IF S
Sbjct: 314 VFDILLESFENFILNTYKSKFTQFLMFYACSLD-------PENCGVKFAS-KLVEIFLSS 365
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
H + R S Y++S L F+PV
Sbjct: 366 NKHPST----------------------------------RMSAVAYLASFLARGKFLPV 391
Query: 122 RVIKTCLNEMSQWCHSYLD--NTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS 179
+ + L + C Y N D+ EE H +F+S CQA+ V+ ++ ++D
Sbjct: 392 SFVASMLKRLIDECVGYCRTCNDDIRPEE------HQIFFSGCQAIMYVLCFRMRSILDV 445
Query: 180 KKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHF 213
+F L L ++M +LNPLR C +V+ F
Sbjct: 446 P---RFRSQLTPLESILMHKLNPLRVCLPSVVAEF 477
>gi|452979315|gb|EME79077.1| hypothetical protein MYCFIDRAFT_87461 [Pseudocercospora fijiensis
CIRAD86]
Length = 683
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 34/250 (13%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
C + LL H + NFI + +N R + C YV+S + +
Sbjct: 385 CRHAQFLLFHFAQTSSAYASNFINRCIQITSNKTAAPNLRLTACAYVASFVARGSHVSSG 444
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEAC-SPVK--HPVFYSVCQALFSVITYKHSILV-- 177
+I++ +++ L++ T E C P + + ++Y++ QAL + ++ LV
Sbjct: 445 LIRSTFMQLA----DLLESLRQTSEPQCIGPDRKSYGMYYAIVQALLYMFCFRWRDLVVR 500
Query: 178 -----------DSKKNMKFLQSLNLT--RLVMSQLNPLRSCNAEIVSHFASITNTYQIVY 224
+++ + + T R + S LNPL+ C+ IV FA I N + +Y
Sbjct: 501 DPGDMIEEDILAEGRDLAWFPGVKETLHRNIHSVLNPLKVCSPHIVGEFAKIANHLRFLY 560
Query: 225 CYNVIHQNARLNVLPIVSTDALGNIIKLNTVNA------------LDQYSPFSTFLLVRC 272
++++ +N R+ + + S LG I + L+ Y PF + L
Sbjct: 561 VFSLLERNKRIRLSQVPSYFKLGGTIDIGRRETAFDRKIGEAHHQLEAYFPFDPYHLPLS 620
Query: 273 KSIITPEIHC 282
K I E +
Sbjct: 621 KKWIEGEFNA 630
>gi|297606399|ref|NP_001058413.2| Os06g0688100 [Oryza sativa Japonica Group]
gi|52076695|dbj|BAD45608.1| putative RNA polymerase I transcription factor RRN3 [Oryza sativa
Japonica Group]
gi|52077031|dbj|BAD46064.1| putative RNA polymerase I transcription factor RRN3 [Oryza sativa
Japonica Group]
gi|215704896|dbj|BAG94924.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636116|gb|EEE66248.1| hypothetical protein OsJ_22429 [Oryza sativa Japonica Group]
gi|255677342|dbj|BAF20327.2| Os06g0688100 [Oryza sativa Japonica Group]
Length = 622
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 97/279 (34%), Gaps = 58/279 (20%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ L +F +++L H F++FY CSL
Sbjct: 308 FDILKTIFRASVLRVHKSKFAQFIMFYACSLD---------------------------- 339
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
P G F FL + +I R S YV S L A F+
Sbjct: 340 --------------PEICGLEFALFLSDIFIKKEEDSISRMSAVSYVGSYLSRARFISAD 385
Query: 123 VIKTCLNEMSQWCHSYLD---NTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS 179
+ L + WC Y D N +T P+ H +FY+ CQA+ ++ ++ ++D
Sbjct: 386 TVVGILKRLVDWCVDYCDLQNNIRIT----TKPINHQIFYASCQAVMYILCFRLRSIMDY 441
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
L ++ ++ L PL+ C IV F ++ +N + + L
Sbjct: 442 PNLKAQLFNMPFGYILTHPLEPLKVCLPSIVDEFLRQAKAARL---FNASVHSEFEDALE 498
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ G + N LD + PF +LL + P
Sbjct: 499 SDLSKTFGGM------NRLDMFFPFDPYLLKESDRYMRP 531
>gi|408397915|gb|EKJ77052.1| hypothetical protein FPSE_02696 [Fusarium pseudograminearum CS3096]
Length = 688
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 109/275 (39%), Gaps = 36/275 (13%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL FE +LPT+ H FL+F+F + + + F L N +Q+
Sbjct: 387 FTILLREFEYMVLPTYKSRHTQFLIFHFAQMHDRLTDAFCGQLITTAFKSNTANSTKQAA 446
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
Y++S + +P S+ + L + ++ IY + C H ++ V+
Sbjct: 447 ASYLASFVARGARLPGSLIRSIFGLL---LHHLDIYRKKYEPLCRGPDLRRFHPYYSLVQ 503
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKN 182
+ +C + D + E+ P + P Y + Q + + T +
Sbjct: 504 AT------LYIFCFRWQDLI-VVAPESADP-EDPASY-IGQEMEWMGTCRR--------- 545
Query: 183 MKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP-IV 241
+L+ + +LNPL+ C IV FA I + +Y Y +I N R+ + +
Sbjct: 546 -------DLSAQIFGKLNPLKVCAPSIVEEFARIAHRLNFMYIYPLIESNKRIRLSQYLT 598
Query: 242 STDALGNIIK-------LNTVNALDQYSPFSTFLL 269
+T + G ++ + + LD Y PF + L
Sbjct: 599 ATYSTGGALRDAGYDMQDESFHQLDPYFPFDPYQL 633
>gi|346978128|gb|EGY21580.1| RNA polymerase I-specific transcription initiation factor rrn3
[Verticillium dahliae VdLs.17]
Length = 693
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 113/307 (36%), Gaps = 70/307 (22%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
L+ F +LPT+ H FL+F+F L + + F+
Sbjct: 395 LVQSFGKFVLPTYKSRHTQFLLFHFGQLSERLRDTFV----------------------- 431
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
M + +N F+ RQ+ Y++ + +P +++
Sbjct: 432 -------GSLMHIFTEQNRPAFV-------------RQAAATYLAGFVARGAHVPGDLVR 471
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS------ 179
T N + SY D +H ++YS+ QA+ V ++ LV S
Sbjct: 472 TIFNLLLARMKSYRLRHD-AQSRGPDMKRHQIYYSMAQAILYVYCFRWKDLVVSVPEHVD 530
Query: 180 --------KKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
++++ L L V ++NPL+ C+ IV FA++ + ++Y + +
Sbjct: 531 PEDASSYLGHELEWIHGLKEELASHVYCRMNPLKICSPAIVDEFATLAHKLGLMYIFPRL 590
Query: 230 HQNARLNVLPIVSTDALGNIIKLNTVNA--------LDQYSPFSTFLLVRCKSIITPEIH 281
+N RL + VS D GN L LD Y PF + L K + + +
Sbjct: 591 AENQRLRLSQFVS-DTYGNGGALRDTGGAQGEEAHQLDPYFPFDPYQLPVSKRWVHGD-Y 648
Query: 282 CQADPIP 288
Q + +P
Sbjct: 649 VQYEAVP 655
>gi|302696657|ref|XP_003038007.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Schizophyllum commune H4-8]
gi|300111704|gb|EFJ03105.1| hypothetical protein SCHCODRAFT_63321 [Schizophyllum commune H4-8]
Length = 674
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 104/240 (43%), Gaps = 50/240 (20%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ LLA+F+ TIL T + FL+F+F SL + ++ ++F
Sbjct: 365 FHTLLAIFDRTILRTFKSRYTQFLLFWFASL-----------------DAELADLF---- 403
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+ +L+ + + + R + Y+ S + A ++
Sbjct: 404 ----AGVLVE-----------------RALLRPDAPAVTRAAAASYIGSFVSRARYVDRE 442
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK-------HSI 175
+ + + + ++LD TD S ++ V+Y+V QA+F + ++ +
Sbjct: 443 SARRVVAVLCGFLGAHLDAIADTDTYTTSAAENTVWYAVAQAVFLIFCFRWRDLLEDEEL 502
Query: 176 LVDSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR 234
+++ K++ +L+ L R+V + LNPLR C+ +V FA + + +YC+ V+ N R
Sbjct: 503 VLEELGTRKWMPALDVLHRVVNAPLNPLRVCSQNVVLQFARVAHAVNFMYCFPVLEANRR 562
>gi|429847579|gb|ELA23170.1| RNA polymerase i specific transcription initiation factor rrn3
superfamily [Colletotrichum gloeosporioides Nara gc5]
Length = 689
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 100/243 (41%), Gaps = 26/243 (10%)
Query: 69 LLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCL 128
LL H M + + F+ L + + RQ+ Y++ + +P +++T
Sbjct: 411 LLFHFGQMSARLRDTFVGSLMHIFGSQNRPSFVRQAAATYLAGFMARGAHVPPDLVRTVF 470
Query: 129 NEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK-HSILVDSKK------ 181
+ + Y D D +H ++Y+ QA + ++ ++VD+ +
Sbjct: 471 ALLLKQMQIYRVKHD-PDARGPDLRRHQIYYAQVQAALYMFCFRWRDLIVDTPEFVDRDD 529
Query: 182 -------NMKFLQSL--NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQN 232
++++Q + L+ V ++NPL+ C IV FA++ + ++Y + + +N
Sbjct: 530 PASYLGNELEWMQGMREELSASVYCKMNPLKICAPAIVEEFATLAHKLGLMYIFPRVEEN 589
Query: 233 ARLNVLPIVS-TDALGNIIKLNTVNA-------LDQYSPFSTFLLVRCKSIITPE-IHCQ 283
R+ + VS T G ++ A LD Y PF + L K I + + Q
Sbjct: 590 KRIRLSQFVSDTYGTGGALRDTGSGAQDEESYQLDPYFPFDPYQLPVSKRWIQGDYVQYQ 649
Query: 284 ADP 286
A P
Sbjct: 650 AIP 652
>gi|159470315|ref|XP_001693305.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277563|gb|EDP03331.1| predicted protein [Chlamydomonas reinhardtii]
Length = 199
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 21/195 (10%)
Query: 77 PVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCH 136
P +F+ L ++ + + I R +C Y++S L A F+P ++ L +++ +C
Sbjct: 9 PSHCSPSFLRLLVSRLRDTRQPPITRAACSAYLASFLARAAFLPESLVVKTLQDLAAFCQ 68
Query: 137 SYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVM 196
Y +N T + +H VFY+ QA+ V+ Y L+ + + L + +++
Sbjct: 69 DYCNNQGDTASQT---QRHQVFYATAQAVLYVLCYHMQPLL--AETVVALVRGPVWQVLN 123
Query: 197 SQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVN 256
+L PL C + + F + IV C ++ Q V P +
Sbjct: 124 HRLQPLGVCLPSVAAEFVHQATSLGIVDCRPLLSQ-----VEPATRSQ-----------R 167
Query: 257 ALDQYSPFSTFLLVR 271
L+ + PF +LL R
Sbjct: 168 PLEMFFPFDPYLLRR 182
>gi|325186713|emb|CCA21261.1| RNA polymerase Ispecific transcription initiation factor rrn3
putative [Albugo laibachii Nc14]
Length = 988
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 25/224 (11%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F LL FE +IL TH + FL+FY C FI L + KI + RQ+
Sbjct: 338 IFKSLLRAFELSILNTHRSKYPQFLLFYVCQYHSKFQNAFISHLITACIDPKIPAVTRQN 397
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIAN-VKIYNIFRQSCCHYVSSLLIHAHFMP 120
C Y++S L A ++ + E + L + + + + IY QS S
Sbjct: 398 CGAYLASFLARAKYVSTTYLEKALYHLLRYLHDQLDIYERSHQSGQASTS---------- 447
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
V++ N+ + D + S + +F S Q + V+ Y+ +V++
Sbjct: 448 --VVEKFGNDRA-----------ADDRPSASLFHNAIFISTLQTVCYVVCYRGLEMVNAP 494
Query: 181 KNMKFLQSLNLTRLVMS-QLNPLRSCNAEIVSHFASITNTYQIV 223
+ FL+SL RL + PL C + F ++ +Q++
Sbjct: 495 RGYDFLRSLGWERLFDTISPCPLVFCQQSVTLEFLNVAELFQLI 538
>gi|449480195|ref|XP_004155826.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Cucumis sativus]
Length = 625
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 102/280 (36%), Gaps = 61/280 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F+ LL F+ T+L + F+VFY CSL
Sbjct: 310 VFDILLLSFQRTVLTAYKSKFAQFIVFYACSLD--------------------------- 342
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
P G F L + + R S Y++S L F+
Sbjct: 343 ---------------PEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTT 387
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++ T L + WC Y ++ +P H VFYS CQA+ V+ ++ +++ +
Sbjct: 388 SLVTTILKRLVDWCLEYGKTLNVDP----NPKAHKVFYSGCQAIMYVLCFRMRSILEIPR 443
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHF---ASITNTYQIVYCYNVIHQNARLNVL 238
L + + L+ +L+PL+ C IV F A + N + N I +L
Sbjct: 444 LKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAKVANLF--TPSENFIFN----GLL 497
Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ + G + + LD + PF LL +C + P
Sbjct: 498 ESDYSRSFGGLER------LDMFFPFDPCLLKKCDRYLRP 531
>gi|449432152|ref|XP_004133864.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Cucumis sativus]
Length = 626
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 102/280 (36%), Gaps = 61/280 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F+ LL F+ T+L + F+VFY CSL
Sbjct: 310 VFDILLLSFQRTVLTAYKSKFAQFIVFYACSLD--------------------------- 342
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
P G F L + + R S Y++S L F+
Sbjct: 343 ---------------PEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTT 387
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
++ T L + WC Y ++ +P H VFYS CQA+ V+ ++ +++ +
Sbjct: 388 SLVTTILKRLVDWCLEYGKTLNVDP----NPKAHKVFYSGCQAIMYVLCFRMRSILEIPR 443
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHF---ASITNTYQIVYCYNVIHQNARLNVL 238
L + + L+ +L+PL+ C IV F A + N + N I +L
Sbjct: 444 LKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAKVANLF--TPSENFIFN----GLL 497
Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ + G + + LD + PF LL +C + P
Sbjct: 498 ESDYSRSFGGLER------LDMFFPFDPCLLKKCDRYLRP 531
>gi|296811122|ref|XP_002845899.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Arthroderma otae CBS 113480]
gi|238843287|gb|EEQ32949.1| RNA polymerase I-specific transcription initiation factor rrn3
[Arthroderma otae CBS 113480]
Length = 683
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 72/295 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F++ ILPT+ H F++F+F A+ + F +C
Sbjct: 380 LLAHFQTIILPTYRSRHAQFVLFHFAQ-----------------ASPIFVDRFATTC--- 419
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
IE + K V I RQ Y++S + + VI+
Sbjct: 420 -------------------IEIILNKSHPV----IIRQYAAAYLASFVARGAHVSGEVIR 456
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK------HSILVDS 179
+ + + L + + D ++ FYS QALF + ++ +I ++
Sbjct: 457 DVFSLLGSHILNLLSSYE-ADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAIEAEA 515
Query: 180 KKN---------MKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
+ N + F Q + L R + S+LNPL+ C+ IV+ FA IT+ + + Y Y
Sbjct: 516 EGNSLPHLNVDEVSFHQEMTNTLHRSIYSKLNPLKVCSPGIVAEFAKITHYFGLFYLYPK 575
Query: 229 IHQNARLNV-----LPIVSTDALGNIIKLNTVN------ALDQYSPFSTFLLVRC 272
+ N R+ + + ++ D + I+ T LD Y PF + + R
Sbjct: 576 LESNKRIRIHNLRGMSSMAMDPMYGTIERETRADDNLAVQLDDYFPFDPYKMPRG 630
>gi|310790661|gb|EFQ26194.1| RNA polymerase I specific transcription initiation factor RRN3
[Glomerella graminicola M1.001]
Length = 689
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 115/306 (37%), Gaps = 69/306 (22%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
L+ F +LPT+ H FL+F+F + + ++ + F S H
Sbjct: 391 LVQSFGKIVLPTYKSRHTQFLLFHFGQM-----------------SARLRDTFVGSLMHI 433
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
S +N F+ RQ+ Y++ + +P +++
Sbjct: 434 FGS-------------QNRPSFV-------------RQAAATYLAGFMARGAHVPSDLVR 467
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKN--- 182
T + + Y D D +H ++Y+ QA + ++ L+ S
Sbjct: 468 TVFALLLKQMQIYRVKHD-PDARGPDLRRHQIYYAQVQAALYMFCFRWRDLIVSTPEFVD 526
Query: 183 -----------MKFLQSL--NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
++++Q + L+ V ++NPL+ C IV FA++ + ++Y + +
Sbjct: 527 RDDPASYLGHELEWMQGMREELSASVYCKMNPLKICAPAIVEEFATLAHKLGLMYIFPRV 586
Query: 230 HQNARLNVLPIVS-TDALGNIIKLNTVNA-------LDQYSPFSTFLLVRCKSIITPE-I 280
+N R+ + VS T G ++ A LD Y PF + L K + + +
Sbjct: 587 EENKRIRLSQFVSDTYGTGGALRDTGSGAQDEEAYQLDPYFPFDPYQLPVSKRWVQDDYV 646
Query: 281 HCQADP 286
H QA P
Sbjct: 647 HYQAVP 652
>gi|357123514|ref|XP_003563455.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Brachypodium distachyon]
Length = 622
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 96/279 (34%), Gaps = 59/279 (21%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ L +F +++L H F++FY CSL
Sbjct: 308 FDTLKTIFRASLLRVHKSKFAQFIMFYACSLD---------------------------- 339
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
P G F FL + I R S YV S L A F+
Sbjct: 340 --------------PEICGLEFAIFLTDTFTKKEEDPISRMSAVSYVGSYLSRARFISAD 385
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEAC-SPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ L + +WC Y DL ++ + H +FY+ CQA+ V+ ++ ++D
Sbjct: 386 TVVGILKRLVEWCVEY---CDLQNKRGTIAKPNHQIFYATCQAVMYVLCFRLRSIMDYPN 442
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
L + L+ L PL+ C IV+ F + + V P
Sbjct: 443 LKSELFHMPFGFLLTHPLEPLKVCLPSIVNEFLRQAKPAGLFTAF----------VDPAF 492
Query: 242 STDALGNIIK--LNTVNALDQYSPFSTFLLVRCKSIITP 278
DA+ + + VN LD + PF +LL I P
Sbjct: 493 E-DAIESDLSRTFGGVNRLDVFFPFDPYLLKESDRYIRP 530
>gi|388579292|gb|EIM19617.1| RNA polymerase I-specific transcription initiation factor RRN3
[Wallemia sebi CBS 633.66]
Length = 679
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 70/258 (27%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ LL+VFE TILPT + F +F + S
Sbjct: 353 FSTLLSVFERTILPTFRSRYTQFTLFKYSSY----------------------------- 383
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
AHF V G L K I ++ R Y++S + A F+
Sbjct: 384 ---------DAHFADVFQGM----LLSKAIFQSDEPSVTRIVAASYLASYVSRARFIDSD 430
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK------HPVFYSVCQALFSVITYKHSIL 176
K + M + + LDN P+ + V++++ QA+F + ++ L
Sbjct: 431 STKRVVGLMCDYIGNELDN-------VPQPITNFKLNTYSVWFAIVQAVFYIFCFRWRDL 483
Query: 177 VDSKKNMK--------------FLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQ 221
+ S + ++ L+ L R ++S LNPL+ C + +V+ FA ++
Sbjct: 484 MLSNDDETIFDHAEALPIGGNTWIPGLDVLQRAILSPLNPLKVCASTVVNQFAKVSQFAG 543
Query: 222 IVYCYNVIHQNARLNVLP 239
+YC+++I N R +V P
Sbjct: 544 FLYCHSIIESNKRSDVTP 561
>gi|52076696|dbj|BAD45609.1| RNA polymerase I specific transcription initiation factor RRN3-like
[Oryza sativa Japonica Group]
gi|52077032|dbj|BAD46065.1| RNA polymerase I specific transcription initiation factor RRN3-like
[Oryza sativa Japonica Group]
Length = 291
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 16/205 (7%)
Query: 77 PVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCH 136
P G F FL + +I R S YV S L A F+ + L + WC
Sbjct: 9 PEICGLEFALFLSDIFIKKEEDSISRMSAVSYVGSYLSRARFISADTVVGILKRLVDWCV 68
Query: 137 SYLD---NTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTR 193
Y D N +T P+ H +FY+ CQA+ ++ ++ ++D L ++
Sbjct: 69 DYCDLQNNIRIT----TKPINHQIFYASCQAVMYILCFRLRSIMDYPNLKAQLFNMPFGY 124
Query: 194 LVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLN 253
++ L PL+ C IV F ++ +N + + L + G +
Sbjct: 125 ILTHPLEPLKVCLPSIVDEFLRQAKAARL---FNASVHSEFEDALESDLSKTFGGM---- 177
Query: 254 TVNALDQYSPFSTFLLVRCKSIITP 278
N LD + PF +LL + P
Sbjct: 178 --NRLDMFFPFDPYLLKESDRYMRP 200
>gi|303272645|ref|XP_003055684.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463658|gb|EEH60936.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 396
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 39/211 (18%)
Query: 4 NELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCC 63
+ LL F ST+LP H F++F+ C+ R + G E ++A+
Sbjct: 23 DALLRTFVSTLLPAHKSKFTQFILFHACA-RDAAGIQGNEGEGGELAS------------ 69
Query: 64 HYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRV 123
+E L +++ + R + Y++S L A F+
Sbjct: 70 -------------------RVVEVLLERLTDPHHPPAGRLAATAYLASFLARATFLSAAF 110
Query: 124 IKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVD-SKKN 182
+ + L ++ WC + + + S VF S CQAL V+ Y+ + ++D +
Sbjct: 111 MSSVLRRLTAWCVATREFAN------ASSATLAVFDSACQALMYVLCYRMTDILDVGDEP 164
Query: 183 MKFLQSLNLTRLVMSQLNPLRSCNAEIVSHF 213
L++L L ++ S+LNP +C +V+ F
Sbjct: 165 ATTLRALPLREILYSKLNPTHTCLPSVVTEF 195
>gi|384247292|gb|EIE20779.1| RRN3-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 801
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 54/225 (24%)
Query: 83 NFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNT 142
+ ++ L ++ + + I R + Y++S L A +P ++ L ++ WC +Y
Sbjct: 412 SLVQLLLGQLTSPNVAPITRSAAAAYMASFLARAALVPEHILIESLQVLAGWCLAYCQEQ 471
Query: 143 DLTDEEAC---SP--------------VKHPVFYSVCQALFSVITYKHSILVD------- 178
D D A +P ++H VFY+ CQ L V+ Y+ L+D
Sbjct: 472 DAKDARAALTIAPLSTRLDMDAGPLRGIQHQVFYAACQGLLYVLCYRLEQLMDASAPAPS 531
Query: 179 -----SKKNMKFLQSLNLTR---------LVMSQLNPLRSCNAEIVSHFASITNTYQIVY 224
S N +S ++ R L+ +L PL C +V+ F + +++
Sbjct: 532 PSPSPSDSNSGGGRSADIVRQLFTDVMPKLLHHRLAPLAVCLPTVVAEFTRLAQRLELMD 591
Query: 225 CYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLL 269
C +LP S A L+ + PF FLL
Sbjct: 592 CA---------ALLPGRSEAA-------RAQRPLEMFFPFDPFLL 620
>gi|452836350|gb|EME38294.1| hypothetical protein DOTSEDRAFT_161166 [Dothistroma septosporum
NZE10]
Length = 675
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 122/312 (39%), Gaps = 85/312 (27%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F ELLA FES I+ H FL+F+F Q
Sbjct: 360 FQELLAQFESFIMRARS-RHAQFLLFHFA----------------------------QIS 390
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
Y ++ F++FL K NI R + C Y++S +
Sbjct: 391 PAYANA---------------FVDFLLKLTIGNGQQNI-RHTACAYLASFTARGSHLNSE 434
Query: 123 VIKTCLNEM----SQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK------ 172
+++ + + + Y ++ D ++ S ++Y+V QAL + ++
Sbjct: 435 IVQDVVGTLCRLLEEMRRRYEPSSSGPDRKSFS-----IYYAVAQALLYIFCFRWRDLVV 489
Query: 173 HSILVDS-------------KKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASIT 217
H+ DS +++ ++ L LT + S+LNPL+ ++ IV FA I
Sbjct: 490 HTAAADSDTEDMLEEDVLAEGRDLMWINGLKETLTLNIHSRLNPLKVASSAIVGEFAKIA 549
Query: 218 NTYQIVYCYNVIHQNARLNVLPIVSTDALG-NIIKLNTV---------NALDQYSPFSTF 267
N + +Y ++++ +N R+ + +++ + G +I + T + L+ Y PF +
Sbjct: 550 NHLRFLYVFSILERNRRIRLGNVIAYRSGGLDIGRRETALDRKTGDEHHQLEAYFPFDPY 609
Query: 268 LLVRCKSIITPE 279
L + K + E
Sbjct: 610 HLPQSKRWLEGE 621
>gi|110739953|dbj|BAF01881.1| hypothetical protein [Arabidopsis thaliana]
Length = 410
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 104/278 (37%), Gaps = 59/278 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F L FE+ IL T+ FL+FY CSL E K A+ K+ IF S
Sbjct: 112 VFESLFKSFENFILNTYKSKFTQFLIFYACSLD-------PENCGVKFAS-KLVEIFLSS 163
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
H + R S Y++S L F+PV
Sbjct: 164 NKHVAT----------------------------------RMSAVAYLASFLARGKFLPV 189
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ + L + C Y T + P H +F+S CQA+ V+ ++ ++D
Sbjct: 190 SFVASMLKRLIDECVGYCR----TCNDDTRPEAHQIFFSGCQAIMYVLCFRMRSILDVP- 244
Query: 182 NMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+F L L ++M +LNPL C +V+ F + + + ++L
Sbjct: 245 --RFRSQLTPLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLFIVSDSFIFD---DLLES 299
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ A G +L+T + PF LL S I+P
Sbjct: 300 ELSRAFGGFERLDT------FFPFDPCLLKSSNSFISP 331
>gi|358391514|gb|EHK40918.1| hypothetical protein TRIATDRAFT_227114 [Trichoderma atroviride IMI
206040]
Length = 993
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 61/306 (19%), Positives = 115/306 (37%), Gaps = 76/306 (24%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F +L F+ +LPT+ H FL+F+F + + F
Sbjct: 386 MFTTILREFDQMVLPTYKSRHTQFLIFHFAQQHERLTDAF-------------------- 425
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C ++S NI +Q+ Y++S + +P
Sbjct: 426 CGQLIASAF-----------------------QSNTPNILKQAAAAYLASFVARGALVPR 462
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK----HPVFYSVCQALFSVITYKHSILV 177
+++T + +LD E C HP +YS+ QA + ++ LV
Sbjct: 463 HLVRTIFMLLIH----HLDQYRRKYEPLCRGPDLKRFHP-YYSLVQATLYIFCFRWQDLV 517
Query: 178 DSK--------------KNMKFLQSL--NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQ 221
S ++++++ S +L+ + +LNPL+ C IV FA + +
Sbjct: 518 VSAPEFVDPEDPASYIGQDLEWIGSARKDLSTHIFGKLNPLKVCAPVIVDEFAKLAHRLN 577
Query: 222 IVYCYNVIHQNARLNVLPIV-STDALGNIIKLN-------TVNALDQYSPFSTFLLVRCK 273
+Y Y +I N R+ + + ST + G ++ + + + LD Y PF + L K
Sbjct: 578 FMYAYPLIESNKRIRLTQFLSSTYSTGGALRDSGFDTQEESFHQLDPYFPFDPYQLPVSK 637
Query: 274 SIITPE 279
+T +
Sbjct: 638 RWLTQD 643
>gi|342872576|gb|EGU74932.1| hypothetical protein FOXB_14573 [Fusarium oxysporum Fo5176]
Length = 688
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 113/296 (38%), Gaps = 76/296 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F LL FE +LPT+ H FL+F+F + + + F
Sbjct: 386 MFTVLLREFEQLVLPTYKSRHTQFLIFHFAQMHERLTDAF-------------------- 425
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C +++ N+ +QS Y++S + +P
Sbjct: 426 CGQLIATAF-----------------------QGNTPNVLKQSAAAYLASFVARGAHLPS 462
Query: 122 RVIKT----CLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV 177
+I++ L+ + Q+ Y D +P +YS+ QA + ++ L+
Sbjct: 463 GLIRSIFGLLLHHLDQYRKKYEPLCRGPDLMRFTP-----YYSLVQATLYIFCFRWQDLI 517
Query: 178 DS--------------KKNMKFLQS--LNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQ 221
S + M+++ + +L+ + S+LNPL+ C IV FA I++
Sbjct: 518 VSTPEFVDPEDPASYIGQEMEWMGTCRKDLSVQIFSKLNPLKVCAPVIVEEFAKISHRLN 577
Query: 222 IVYCYNVIHQNARLNVLP-IVSTDALGNIIK-------LNTVNALDQYSPFSTFLL 269
+Y Y ++ N R+ + + +T + G ++ + + LD Y PF + L
Sbjct: 578 FMYVYPLVESNKRVRLTQYLTATYSTGGALRDAGYETQDESFHQLDPYFPFDPYQL 633
>gi|71028500|ref|XP_763893.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350847|gb|EAN31610.1| hypothetical protein TP04_0258 [Theileria parva]
Length = 971
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 24/243 (9%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+ EL VFE IL + +V F+ FY S + + F++ L+ + + + I R++
Sbjct: 544 MVRELFEVFEEVILQAYKCKYVQFIYFYVTSFDVKFLKMFLQRLFTIVYDNAQHVIKRRT 603
Query: 62 CCHYVSSLLIHAHFMP----VSIGENFIEFLWKKIANVKIYNIFRQSC----CHYVSSLL 113
Y+SSL+ A+F+P +S +F L +N F +C V S +
Sbjct: 604 AASYISSLICRANFVPHHFIISTLTHFFTLL-------SPFNQFIHNCHIANSTIVKSTI 656
Query: 114 IHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDE------EACSPVKH-PVFYSVCQALF 166
+ + V+ + W ++ N+ + + A K +FYS+ Q +
Sbjct: 657 VKGNSHSVKSNSRGNSRGISWVNTVKSNSGVNSKTIGVHLNAVGVTKKLSLFYSILQDIL 716
Query: 167 SVITYKHSILVDSKKNMKFLQS--LNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVY 224
+I Y ++ S+ + F+Q+ L + S L+PL C ++S T+ + +
Sbjct: 717 YIICYHTGVVSGSETCVSFIQNTETGLMAYLTSYLDPLSYCKTSVISQAIKSTSHFSNLA 776
Query: 225 CYN 227
C N
Sbjct: 777 CLN 779
>gi|302309898|ref|XP_449572.2| hypothetical protein [Candida glabrata CBS 138]
gi|196049206|emb|CAG62548.2| unnamed protein product [Candida glabrata]
Length = 612
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 53/235 (22%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
FN L +F++ ILPT+ V +++F+ +L + ++++
Sbjct: 347 FNTLTTLFKTHILPTYYTRSVQYIMFHLSQQQLELMDSYL-------------------- 386
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
LI F E I+ L Y+ S + A +
Sbjct: 387 -----VTLIDISFAANETSEKRIKSL------------------QYLGSYIARAKKLSRT 423
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSP-----VKHPVFYSVCQALFSVITYKHSILV 177
I + ++ W + Y+ + EE P KH FY+ QAL + ++H L
Sbjct: 424 QIVFVASYLTSWLNRYVIERE---EEVNQPGGMDRFKH--FYAAFQALCYIFCFRHKDLR 478
Query: 178 DSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQN 232
D + + TR+V+S+ NPL+ CN ++ FA I + YC+++I N
Sbjct: 479 DVDGSWECELDKFFTRMVISKFNPLKYCNENVMLMFARIAQEEDVAYCFSIIENN 533
>gi|398398327|ref|XP_003852621.1| hypothetical protein MYCGRDRAFT_59030, partial [Zymoseptoria
tritici IPO323]
gi|339472502|gb|EGP87597.1| hypothetical protein MYCGRDRAFT_59030 [Zymoseptoria tritici IPO323]
Length = 678
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 95/214 (44%), Gaps = 40/214 (18%)
Query: 102 RQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEAC-SPVK--HPVF 158
R + C YV+S A + ++++ E++Q YLD+ T E C P + + ++
Sbjct: 428 RLTACAYVASFTARASRISTKLVR----EITQTLCVYLDDMRHTYEPNCRGPDRKAYSMY 483
Query: 159 YSVCQALFSVITYKHSILVDS-------------------KKNMKFLQSLN--LTRLVMS 197
Y+ QALF + ++ L++ +++ ++ L L + + S
Sbjct: 484 YATAQALFYIFCFRWRDLIEEPSSVGSDDEGMSAEDILAEGRDLSWISGLKETLNKNMHS 543
Query: 198 QLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNA 257
+NPL+ C+A IV FA I+N + +Y ++++ +N R+ + + S+ + I +
Sbjct: 544 IMNPLKVCSAPIVGEFAKISNHLRFLYVFSLLERNKRIRLGQMSSSVSHAGGIDIGRRET 603
Query: 258 ------------LDQYSPFSTFLLVRCKSIITPE 279
L+ Y PF + L + + + E
Sbjct: 604 AWDRKTGDVHHQLEPYFPFDPYNLSQSRRWLEGE 637
>gi|30686199|ref|NP_850236.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
gi|20465617|gb|AAM20140.1| unknown protein [Arabidopsis thaliana]
gi|23296957|gb|AAN13210.1| unknown protein [Arabidopsis thaliana]
gi|330253924|gb|AEC09018.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
Length = 613
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 104/278 (37%), Gaps = 59/278 (21%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F L FE+ IL T+ FL+FY CSL E K A+ K+ IF S
Sbjct: 315 VFESLFKSFENFILNTYKSKFTQFLIFYACSLD-------PENCGVKFAS-KLVEIFLSS 366
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
H + R S Y++S L F+PV
Sbjct: 367 NKHVAT----------------------------------RMSAVAYLASFLARGKFLPV 392
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ + L + C Y T + P H +F+S CQA+ V+ ++ ++D
Sbjct: 393 SFVASMLKRLIDECVGYCR----TCNDDTRPEAHQIFFSGCQAIMYVLCFRMRSILDVP- 447
Query: 182 NMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+F L L ++M +LNPL C +V+ F + + + ++L
Sbjct: 448 --RFRSQLTPLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLFIVSDSFIFD---DLLES 502
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ A G +L+T + PF LL S I+P
Sbjct: 503 ELSRAFGGFERLDT------FFPFDPCLLKSSNSFISP 534
>gi|322695998|gb|EFY87797.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Metarhizium acridum CQMa 102]
Length = 688
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 128/323 (39%), Gaps = 43/323 (13%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F +L F +LPT+ H FL+F+F + + F L N+ +Q+
Sbjct: 386 MFTTILREFHHMVLPTYKSRHTQFLIFHFAQRHERLIDAFCGQLMATAFQSNTPNVLKQA 445
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S + +P S+ L + +++ Y + C H ++ V
Sbjct: 446 AAAYLASFVARGAHVPPSLVRTMFTLL---LHHLEQYRRKYEPLCRGPDLKRFHPYYSLV 502
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ + +C + D ++ E P + P Y + Q L + T S+K
Sbjct: 503 QAT------LYIFCFRWQDLV-VSAPEVVDP-EDPASY-IGQDLEWIGT--------SRK 545
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
+L+ + +LNPL+ C IV FA + + VY Y ++ N R+ + +
Sbjct: 546 --------DLSVQIFGKLNPLKVCAPVIVDEFAKLAHRLNFVYIYPLVESNKRVRLTQFL 597
Query: 242 S-TDALGNIIK-------LNTVNALDQYSPFSTFLLVRCKSIITPE-IHCQADPIPVTTN 292
S T + G ++ + + LD Y PF + L K + + +H ++ +P
Sbjct: 598 SATYSTGGALRDAGYEGQEESYHQLDPYFPFDPYQLPISKRWLADDYVHWKS--VPGLNQ 655
Query: 293 TNRTQNLLIADPVSSKQADHDED 315
N N D ++ D +E+
Sbjct: 656 DNDADN----DSDGMEEEDDNEE 674
>gi|297851508|ref|XP_002893635.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297339477|gb|EFH69894.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 610
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 25/182 (13%)
Query: 102 RQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSV 161
R S Y++S L F+P + + L + C Y T + P H VFYS
Sbjct: 366 RMSAVAYLASYLSRGKFLPASFVASMLKRLVDDCAEYCK----TCNDDVKPEAHQVFYSG 421
Query: 162 CQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQ 221
CQA+ V+ ++ ++D + LQ +L ++ +LNPL C +VS F
Sbjct: 422 CQAILYVLCFQMRSILDIPRFQ--LQLTSLESILSHKLNPLMVCLPSVVSEFLKQAKAGG 479
Query: 222 I-----VYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
+ + ++ +H++ + A G +L+T + PF LL S I
Sbjct: 480 LFIVSEAFIFDDLHESEL--------SRAFGGFERLDT------FFPFDPCLLKMSSSYI 525
Query: 277 TP 278
+P
Sbjct: 526 SP 527
>gi|393215982|gb|EJD01473.1| RNA polymerase I-specific transcription initiation factor RRN3
[Fomitiporia mediterranea MF3/22]
Length = 769
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 75/265 (28%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ LL++FE TIL T + FL+F++ SL + F+ +
Sbjct: 419 FHALLSIFERTILRTFKSRYTQFLIFWYSSLDTQFRDRFLGTI----------------- 461
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
VS+ L+ PV + R + YV+S + A F+
Sbjct: 462 ---VSAALLEPS-QPV---------------------VTRAAAASYVASYVSRAAFVARG 496
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEAC-------------SPVKHPVFYSVCQALFSVI 169
+ + + Q+ ++LD + ++A S +H VFY+ QA+F +
Sbjct: 497 ETQMVVRVLCQFLETHLDEFEAYAKQAANARSSGYEVLNQQSAEQHAVFYAAAQAMFLIF 556
Query: 170 TYKHSILVDSKKNMKFLQSLN--------------------LTRLVMSQLNPLRSCNAEI 209
++ L +N ++ + R+V S LNPL+ C++ +
Sbjct: 557 CFRWRDLTQRDENDADIEEFEDVATINGGVAHRAWMPELKAMQRVVNSALNPLKVCSSNV 616
Query: 210 VSHFASITNTYQIVYCYNVIHQNAR 234
V FA + +YC++++ N R
Sbjct: 617 VQQFARVAQRVGFIYCFSILEANRR 641
>gi|45185203|ref|NP_982920.1| ABL027Wp [Ashbya gossypii ATCC 10895]
gi|44980861|gb|AAS50744.1| ABL027Wp [Ashbya gossypii ATCC 10895]
gi|374106123|gb|AEY95033.1| FABL027Wp [Ashbya gossypii FDAG1]
Length = 625
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 126/316 (39%), Gaps = 56/316 (17%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
FN L+++F+S ILPT+ V +L+F+ + + + F+
Sbjct: 356 FNTLVSLFKSHILPTYYTRSVQYLMFHVSQQQPQLMDAFL-------------------- 395
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
LI F P E + KKI +++ Y+ S + A +
Sbjct: 396 -----VTLIDIAFSPN-------ETMEKKIKSLQ-----------YLGSFIARAKKLTHT 432
Query: 123 VIKTCLNEMSQWCHSY-LDNTDLTD-EEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
I + ++ W + Y L+ + D KH FY+ QAL + ++H++ D
Sbjct: 433 QITFVASYLTSWLNRYVLEREEEVDLPGGMDRFKH--FYAAFQALCYIFCFRHALFRDGN 490
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ + R V+S+ NPL+ CN ++ FA I IVYC+++I N + I
Sbjct: 491 AWECDIDAF-FQRTVISKFNPLKYCNENVMLMFARIAQHEGIVYCFSIIENNNNERLRGI 549
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
+ + + + A ST+ L + I + + DP+ + N ++
Sbjct: 550 MGKSSERSDGLASATGAA------STWSLAARQQFIDLQSYFPYDPLFLKQYKNLMRDYY 603
Query: 301 IADPVSSKQADHDEDD 316
I S AD++ DD
Sbjct: 604 I--EWSEISADYESDD 617
>gi|393241009|gb|EJD48533.1| RNA polymerase I-specific transcription initiation factor RRN3
[Auricularia delicata TFB-10046 SS5]
Length = 719
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 68/253 (26%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFL-WKKIANVKIYNIFRQS 61
F LL +F++TIL T + F+VF++ SL + F+ L + + + + R +
Sbjct: 406 FLSLLTIFDTTILRTFKSRYTQFVVFWYASLDAEFADLFLGMLVGRALRDAGQPPVARAA 465
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S + A F IG + A K+ +F C +++ L
Sbjct: 466 AASYIASFVSRALF----IG---------RAAARKVTELF----CTFLAQHLA------- 501
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL----- 176
L +E+ + +H VFY+ QA+F + ++ L
Sbjct: 502 ----------------------LVEEDPLAARQHMVFYAAAQAVFLIFCFRWRDLLLEDE 539
Query: 177 -----VDSK----------KNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTY 220
VD + + ++L L+ + R+V S +NPL+ C+ +V+ FA +
Sbjct: 540 EGDGEVDDEMEIAMGASLSRKRRWLPELDVMQRVVSSPMNPLKVCSQNVVNQFARVAQHT 599
Query: 221 QIVYCYNVIHQNA 233
+YCY ++ A
Sbjct: 600 DFLYCYPIMDGTA 612
>gi|358378017|gb|EHK15700.1| hypothetical protein TRIVIDRAFT_56258 [Trichoderma virens Gv29-8]
Length = 688
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/318 (19%), Positives = 120/318 (37%), Gaps = 85/318 (26%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F +L F+ +LPT+ H FL+F+F + + F
Sbjct: 386 MFITILREFDQMVLPTYKSRHTQFLIFHFAQQHERLTDAF-------------------- 425
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C ++S NI +Q+ Y++S + +P
Sbjct: 426 CGQLIASAF-----------------------QSNTPNILKQAAAAYLASFVARGALVPR 462
Query: 122 RVIKT----CLNEMSQWCHSYLDNTDLTDEEACSPVK----HPVFYSVCQALFSVITYKH 173
+++T ++ + Q+ Y E C HP +YS+ QA + ++
Sbjct: 463 SLVRTIFMLLIHHLDQYRRKY--------EPLCRGPDLKRFHP-YYSLLQATLYIFCFRW 513
Query: 174 SILVDS--------------KKNMKFLQSL--NLTRLVMSQLNPLRSCNAEIVSHFASIT 217
LV S ++++++ + +L+ V +LNPL+ C IV FA +
Sbjct: 514 QDLVVSAPEFVDPEDPASYIGQDLEWIGTTRKDLSTHVFGKLNPLKVCAPVIVDEFAKLA 573
Query: 218 NTYQIVYCYNVIHQNARLNVLPIV-STDALGNIIKLNTVNA-------LDQYSPFSTFLL 269
+ +Y Y +I N R+ + + ST + G ++ + + LD Y PF + L
Sbjct: 574 HRLNFMYAYPLIESNKRIRLTQFLSSTYSTGGALRDSGFDTQEESFHQLDPYFPFDPYQL 633
Query: 270 VRCKSIITPE-IHCQADP 286
K + + +H ++ P
Sbjct: 634 PVSKRWLAEDYVHWKSIP 651
>gi|392587027|gb|EIW76362.1| RNA polymerase I-specific transcription initiation factor RRN3
[Coniophora puteana RWD-64-598 SS2]
Length = 886
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 96/258 (37%), Gaps = 51/258 (19%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F+ LL +F+ TIL T + FL+F++ SL + F L +K +Y +
Sbjct: 481 FHTLLGIFDRTILHTFKSRYTQFLLFWYTSLSPEFADLFQGLLVEK----ALYGASSGAG 536
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+ +P + R Y++S + A F+
Sbjct: 537 AGASGAGAGTGTSVPA---------------------VTRAVAASYIASFVSRATFVDRD 575
Query: 123 VIKTCLNEMSQWCHSYLDNTDLT---DEEACSPVKHPVFYSVCQALFSVITYKHSIL--- 176
+ + ++ ++L+ + T E H VFY+V QA+F + ++ L
Sbjct: 576 GAREVTGVLCRFLAAHLEWVEATIAAGGEMPGMAHHTVFYAVTQAVFLIFCFRWRDLRED 635
Query: 177 -------------------VDSKKNMKFLQSLNLT-RLVMSQLNPLRSCNAEIVSHFASI 216
++ ++ L + R + S LNPL+ C+ +V FA +
Sbjct: 636 GIEGEGEGESAREEGRRGGTGARWKGSWMPELGIVQRAITSPLNPLKVCSPGVVQQFARV 695
Query: 217 TNTYQIVYCYNVIHQNAR 234
+YCY+++ N R
Sbjct: 696 AQATDFIYCYSILEANKR 713
>gi|340520015|gb|EGR50252.1| RNA polymerase I specific transcription factor [Trichoderma reesei
QM6a]
Length = 684
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/318 (19%), Positives = 121/318 (38%), Gaps = 85/318 (26%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F +L F+ +LPT+ H FL+F+F + + F
Sbjct: 385 MFVTILREFDQMVLPTYKSRHTQFLIFHFAQQHERLTDAF-------------------- 424
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C ++S NI +Q+ Y++S + +P
Sbjct: 425 CGQLIASAF-----------------------QSNTPNILKQAAAAYLASFVARGAHVPR 461
Query: 122 RVIKT----CLNEMSQWCHSYLDNTDLTDEEACSPVK----HPVFYSVCQALFSVITYKH 173
+++T ++ + Q+ Y E C HP +YS+ QA + ++
Sbjct: 462 SLVRTIFMLLIHHLDQYRRKY--------EPICRGPDLKRFHP-YYSLVQATLYIFCFRW 512
Query: 174 SILVDS--------------KKNMKFLQS--LNLTRLVMSQLNPLRSCNAEIVSHFASIT 217
LV S ++++++ + +L+ + +LNPL+ C IV FA +
Sbjct: 513 QDLVVSAPEFVDPEDPASYIGQDLEWIGTSRKDLSTHIFGKLNPLKVCAPVIVEEFAKLA 572
Query: 218 NTYQIVYCYNVIHQNARLNVLP-IVSTDALGNIIKLNTVNA-------LDQYSPFSTFLL 269
+ +Y Y +I N R+ + + ST + G ++ + + LD Y PF + L
Sbjct: 573 HRLNFMYAYPLIEGNKRIRLTQYLSSTYSTGGALRDSGFDTQEESFHQLDPYFPFDPYQL 632
Query: 270 -VRCKSIITPEIHCQADP 286
V + ++ +H +A P
Sbjct: 633 PVSKRWLVNDYVHWKAIP 650
>gi|242094004|ref|XP_002437492.1| hypothetical protein SORBIDRAFT_10g028030 [Sorghum bicolor]
gi|241915715|gb|EER88859.1| hypothetical protein SORBIDRAFT_10g028030 [Sorghum bicolor]
Length = 593
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 125 KTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMK 184
+ + + +WC Y + L +P+KH +FY+ CQA+ V+ ++ ++D N+K
Sbjct: 359 EDAITRLVEWCGDYC-GSQLDKGVTANPIKHQLFYASCQAVMYVLCFRLRSIMDY-PNLK 416
Query: 185 F-LQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYC-YNVIHQNARLNVLPIVS 242
L + + ++ L PL+ C IV+ F + + + N H++A + L
Sbjct: 417 LQLFQMRIQNILAHPLEPLKVCLPSIVNEFLRQARSASLFHASVNSTHEDAVESDL---- 472
Query: 243 TDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ A G + N LD + PF +LL I P
Sbjct: 473 SKAFGGL------NRLDMFFPFDPYLLKESDRYIRP 502
>gi|4587515|gb|AAD25746.1|AC007060_4 EST gb|Z37678 comes from this gene [Arabidopsis thaliana]
Length = 622
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 101/283 (35%), Gaps = 67/283 (23%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
++F L FE+ IL T+ FL+FY CSL
Sbjct: 319 MVFEILFKSFENYILNTYKTKFSQFLMFYACSLD-------------------------- 352
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
P + G F L + + R S Y++S L F+P
Sbjct: 353 ----------------PENCGVRFASKLLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLP 396
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
+ + L + C Y T + P H VFYS CQA+ V+ ++ +V+
Sbjct: 397 ASFVASMLKRLVDECAEYCG----TCNDDVKPEAHQVFYSGCQAILYVLCFRMRSIVEIP 452
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV-----YCYNVIHQNARL 235
+ +SL ++ +LNPL C +VS F + + ++ +H++
Sbjct: 453 RFQSQFRSLE--SILSHKLNPLLVCLPSVVSEFLKQAKAGGLFIVSESFIFDDLHESEL- 509
Query: 236 NVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ A G +L+T + PF LL S I+P
Sbjct: 510 -------SRAFGGFERLDT------FFPFDPCLLKMSSSYISP 539
>gi|297823681|ref|XP_002879723.1| hypothetical protein ARALYDRAFT_902994 [Arabidopsis lyrata subsp.
lyrata]
gi|297325562|gb|EFH55982.1| hypothetical protein ARALYDRAFT_902994 [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 102 RQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSV 161
R + Y++S L A F+P + + L + C Y T + P +H VFYSV
Sbjct: 323 RTNAVAYLASYLARAKFLPASFVASMLKRLVDECADYCR----TCNDDARPEEHQVFYSV 378
Query: 162 CQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMS-QLNPLRSCNAEIVSHF 213
CQA+ ++ ++ ++D +F + V+S +L+PLR C +VS F
Sbjct: 379 CQAILYLLCFRMRSILDVP---RFRSQITPLESVLSHKLDPLRVCLPSVVSEF 428
>gi|301097238|ref|XP_002897714.1| RNA polymerase I-specific transcription initiation factor rrn3,
putative [Phytophthora infestans T30-4]
gi|262106735|gb|EEY64787.1| RNA polymerase I-specific transcription initiation factor rrn3,
putative [Phytophthora infestans T30-4]
Length = 787
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 114/298 (38%), Gaps = 39/298 (13%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
++F LL VFE +IL TH + FL+FY C + + FI L + + RQ
Sbjct: 362 LIFKYLLKVFEHSILNTHRSKYPQFLLFYVCRMDPQFQDVFISQLLATSLDPQTPPTTRQ 421
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
SC Y++S L A ++ V+ +L K +Y++ + H + AH
Sbjct: 422 SCGAYLASFLARAKYISVA-------YLQK-----ALYHLLK--WLHDQMDVYDAAHQEQ 467
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV--D 178
E + +N +T + + +F S Q + ++ ++ + D
Sbjct: 468 QERDGETAAERDERLLEESENMGITGDRG---FQESIFISSLQTVCYMVCFRGLEIATSD 524
Query: 179 SKKNMKFLQSLNLTRLVMSQLN--PLRSCNAEIVSHFASITNTYQIV--YCYNVIHQ--- 231
FL+SL RL+++ PL C + + F ++ + +V C + Q
Sbjct: 525 DGAGYDFLRSLGWERLLVTSGGYCPLAYCQQTVATEFLNLVEAFDLVSEECLERVDQAIG 584
Query: 232 -----------NARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ + P + + + L L+ + PF +LL R I P
Sbjct: 585 TVSSSTSKSAKSMERSKKPTAGSASASTL--LGQRQPLETFFPFDPYLLRRSFRYIGP 640
>gi|15221445|ref|NP_174347.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
gi|332193126|gb|AEE31247.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
Length = 604
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 100/282 (35%), Gaps = 67/282 (23%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F L FE+ IL T+ FL+FY CSL
Sbjct: 302 VFEILFKSFENYILNTYKTKFSQFLMFYACSLD--------------------------- 334
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
P + G F L + + R S Y++S L F+P
Sbjct: 335 ---------------PENCGVRFASKLLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLPA 379
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ + L + C Y T + P H VFYS CQA+ V+ ++ +V+ +
Sbjct: 380 SFVASMLKRLVDECAEYCG----TCNDDVKPEAHQVFYSGCQAILYVLCFRMRSIVEIPR 435
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV-----YCYNVIHQNARLN 236
+SL ++ +LNPL C +VS F + + ++ +H++
Sbjct: 436 FQSQFRSLE--SILSHKLNPLLVCLPSVVSEFLKQAKAGGLFIVSESFIFDDLHESEL-- 491
Query: 237 VLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ A G +L+T + PF LL S I+P
Sbjct: 492 ------SRAFGGFERLDT------FFPFDPCLLKMSSSYISP 521
>gi|400601108|gb|EJP68751.1| RNA polymerase I specific transcription initiation factor RRN3
[Beauveria bassiana ARSEF 2860]
Length = 684
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/309 (18%), Positives = 118/309 (38%), Gaps = 69/309 (22%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F +L F+ +LPT+ H FL+F+F + + F C
Sbjct: 386 FTIILREFDHMVLPTYKSRHTQFLIFHFAQQHQRLTDAF--------------------C 425
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+++ N+ +Q+ Y++S + +P
Sbjct: 426 GQLIATAF-----------------------QSNTPNVLKQAAAAYLASFVARGALVPCS 462
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILV----- 177
+++T + + Q+ Y + HP +YS+ QA + ++ LV
Sbjct: 463 LVRTIFSLLLQYLEQYRRKYEPICRGPDLKRFHP-YYSLVQATLYIFCFRWQDLVVGAPD 521
Query: 178 -----DS----KKNMKFLQS--LNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
D+ ++++++ S +L+ + +LNPL+ C IV FA + + +Y Y
Sbjct: 522 TVDVDDAASYIGQDLEWIGSSRKDLSIQIFGKLNPLKVCAPVIVEEFAKLAHRLNFMYVY 581
Query: 227 NVIHQNARLNVLPIV-STDALGNIIKLNTVNA-------LDQYSPFSTFLL-VRCKSIIT 277
++ N R+ + + ST A G ++ + LD Y PF + L V + ++
Sbjct: 582 PLVESNKRVRLTQFLSSTYATGGALRDAGYDGQEESFHQLDPYFPFDPYQLPVSKRWLVN 641
Query: 278 PEIHCQADP 286
+H ++ P
Sbjct: 642 DYVHWKSVP 650
>gi|242803987|ref|XP_002484284.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Talaromyces stipitatus ATCC 10500]
gi|218717629|gb|EED17050.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Talaromyces stipitatus ATCC 10500]
Length = 697
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 110/295 (37%), Gaps = 71/295 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F + +LPT+ H FLVF+F + E F+ +C H
Sbjct: 404 LLSHFVNYVLPTYRSRHTQFLVFHFSQFSPDLVEKFV-----------------STCMHI 446
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
+ S A I RQS Y+ S + + R ++
Sbjct: 447 IDSKTQPA--------------------------IMRQSAAAYLGSFVARGKHVTSRTVR 480
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKN--- 182
EM S+L T ++ FY+ QA+ + ++ L + +
Sbjct: 481 DIF-EMLGENLSHLRTTYEATCRGPDLRRYGPFYASTQAILYIFCFRWRDLTTAAEENDG 539
Query: 183 ------------MKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
+ F S+ L + + S+ NPL+ C+ IV+ FA I + + +Y Y++
Sbjct: 540 VEDDDDDFDLEDVTFPPSVKEILHQAIYSRFNPLKVCSPAIVTEFARIAHRLRFMYVYSL 599
Query: 229 IHQNARLNVLPIVS----TDALGNIIKL------NTVNALDQYSPFSTFLLVRCK 273
+ N R+ + S +D +I++ + + LD Y PF + L R +
Sbjct: 600 LESNKRIRMSSFRSITTLSDPRFSIVEREIRAGNDGGDQLDAYFPFDPYQLPRSR 654
>gi|254585091|ref|XP_002498113.1| ZYRO0G02552p [Zygosaccharomyces rouxii]
gi|238941007|emb|CAR29180.1| ZYRO0G02552p [Zygosaccharomyces rouxii]
Length = 610
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 112/291 (38%), Gaps = 58/291 (19%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+FN L +F+S +LPT+ + +++F+ + + + F+
Sbjct: 344 TIFNTLTTLFKSHVLPTYYTKSIQYIMFHISQQQAELMDAFL------------------ 385
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
LI F P E KKI +++ Y+ S + A +
Sbjct: 386 -------VTLIDISFSPTETSE-------KKIKSLQ-----------YLGSYIARAKKLS 420
Query: 121 VRVIKTCLNEMSQWCHSY-LDNTDLTDEEAC-SPVKHPVFYSVCQALFSVITYKHSILVD 178
I + ++ W + Y L+ + D+ KH FY+ QAL + +++ + D
Sbjct: 421 RTQIIFVASYLTSWLNRYVLEREEEVDQPGGMERFKH--FYAAFQALCYIFCFRYQMFRD 478
Query: 179 SKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
+ + R+V+++ NPL+ CN ++ FA I + +C+++I N
Sbjct: 479 PDGSWECELDKLFPRMVITKFNPLKYCNENVMLMFARIAQHEDVAFCFSIIENN------ 532
Query: 239 PIVSTDALGNIIKLNTVNALDQYSPF--STFLLVRCKSIITPEIHCQADPI 287
+ + L II N P ST+ L + I + + DP+
Sbjct: 533 ---NNERLRGIIGRGDSNQKSSSQPVAASTWSLATRQQFIDLQSYFPYDPL 580
>gi|396470626|ref|XP_003838675.1| hypothetical protein LEMA_P023480.1 [Leptosphaeria maculans JN3]
gi|312215244|emb|CBX95196.1| hypothetical protein LEMA_P023480.1 [Leptosphaeria maculans JN3]
Length = 751
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 119/315 (37%), Gaps = 76/315 (24%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F LL+ F + ILPT+ H F++F+F + + N F
Sbjct: 431 IFESLLSQFANIILPTYRSRHTQFVLFHFSQ-----------------TSSDLINRFAGC 473
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C H L P + R S Y++S + +
Sbjct: 474 CSH-----LAFDQGRP---------------------QLMRASAAAYLASFIARGAHVSR 507
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILVD 178
V++ + + C+ +L+ +T E C ++ +Y++ QAL ++ L+
Sbjct: 508 EVVRDVFDLL---CY-HLEALRITHEPLCKGPDLRRYSTYYAISQALIYTFCFRWRDLII 563
Query: 179 S--------------KKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQI 222
+ + + + S+ L R + +LNPL+ C IVS FA + + +
Sbjct: 564 TPDDTPPTDEDIIYHEGDFTWHSSVQEVLRRNIFCRLNPLKICAPTIVSQFARMAHHLRF 623
Query: 223 VYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNA---------LDQYSPFSTFLLVRCK 273
+Y Y +I N R+ + +++ L I T +D Y PF ++L + K
Sbjct: 624 MYIYPLIETNKRVRLARSMASGYLDGIGGRETALTGKRGEQTFLMDAYFPFDPYVLPKSK 683
Query: 274 SIITPEIHCQADPIP 288
+ + + Q P+P
Sbjct: 684 RWVESD-YVQWKPVP 697
>gi|413934684|gb|AFW69235.1| hypothetical protein ZEAMMB73_457339 [Zea mays]
Length = 592
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 12/155 (7%)
Query: 125 KTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMK 184
+ + + WC Y + L + +P+KH +FY+ CQA+ V+ ++ ++D +
Sbjct: 358 EDAITRLVDWCDYYCGHQ-LDNGVTANPIKHQLFYASCQAVMYVLCFRLRSIMDYPNLKQ 416
Query: 185 FLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV-IHQNARLNVLPIVST 243
L + + +++ L PL+ C IV+ F + + + +H++A + L +
Sbjct: 417 QLFRMRIRDILVHPLQPLKVCLPSIVNEFLRQATAASLFHAPAISMHEDAVESDL----S 472
Query: 244 DALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
A G + N LD + PF +LL I P
Sbjct: 473 KAFGGL------NRLDMFFPFDPYLLKESDRYIRP 501
>gi|444323349|ref|XP_004182315.1| hypothetical protein TBLA_0I01360 [Tetrapisispora blattae CBS 6284]
gi|387515362|emb|CCH62796.1| hypothetical protein TBLA_0I01360 [Tetrapisispora blattae CBS 6284]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 66/262 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+FN L +F++ +L T+ + +++F+ L+ + ++F+
Sbjct: 383 IFNTLTTLFKTHVLSTYYTKSIQYIMFHISQLQSELMDSFL------------------- 423
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
VS LI F P E KK+ Y+ S + A +
Sbjct: 424 ----VS--LIDISFSPNETSE-------KKVK-----------ALQYLGSYIARAKKLSR 459
Query: 122 RVIKTCLNEMSQWCHSYL-------DNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHS 174
I + ++ W + ++ D D + FY+V Q+L + ++H
Sbjct: 460 TQIIFVASYLTSWLNRFVLEREYEVDMIANGDGSGGGMDRFKHFYAVFQSLCYMFCFRHE 519
Query: 175 ILVDSKKNM------KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNV 228
+ D KF Q RL++S+ NPL+ CN ++ FA IT I YC+++
Sbjct: 520 LFKDQVTGQWECELDKFFQ-----RLIVSKFNPLKYCNENVMLMFARITQHEGIAYCFSI 574
Query: 229 IHQNA--RLNVL---PIVSTDA 245
I N+ RL + P+ +TD
Sbjct: 575 IENNSNERLRGILGKPLDNTDG 596
>gi|84996413|ref|XP_952928.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303925|emb|CAI76304.1| hypothetical protein, conserved [Theileria annulata]
Length = 534
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 135/327 (41%), Gaps = 30/327 (9%)
Query: 5 ELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCH 64
EL VFE IL + +V F+ F+ S + F++ L+ + + + I R++
Sbjct: 110 ELFEVFEQVILQAYKCKYVQFIYFFIASFDVKWLRMFLQRLFGIVYDNSQHVIKRRTAAS 169
Query: 65 YVSSLLIHAHFMPVSIGENFI-EFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRV 123
Y+SSL+ A ++P +NFI L + +N F S+L+ + + +
Sbjct: 170 YISSLICRAKYVP----QNFITSTLTHFFTLLSPFNQFISKSGD--SNLITNTTGIDRTI 223
Query: 124 IKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNM 183
T S + + N + + K +FYS+ Q + +I Y ++ S+ +
Sbjct: 224 SGTVSTNTSSTVNGIITNGKVVTK------KLSLFYSILQDILYIICYHTDVISRSESCV 277
Query: 184 KFLQS--LNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
F+++ L + S L+PL C ++S T+ Y + C + ++ ++
Sbjct: 278 SFIENSETGLMAYLTSYLDPLAYCKRSVISEAIKSTSYYSNLACLHKFLKSKSY----LL 333
Query: 242 STDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIIT---------PEIHCQADPIPVTTN 292
K + + +D + PF +LL + I+ PE D V +
Sbjct: 334 DNSKESEQFKWSFYSPIDSFFPFDPYLLHHSRFYISDKYNSKPHVPESAMLEDQTRVDSV 393
Query: 293 TNRTQNLLIADPVSSKQADHD--EDDF 317
QN ++ + V + ++D + EDD
Sbjct: 394 VTTQQNKVVDEVVDAIKSDKNLVEDDL 420
>gi|402226235|gb|EJU06295.1| RNA polymerase I-specific transcription initiation factor RRN3
[Dacryopinax sp. DJM-731 SS1]
Length = 706
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 93/257 (36%), Gaps = 69/257 (26%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKK-IANVKIYNIFRQS 61
F LL +F+ TILPT + FL+FY SL S + F L +K + + + R +
Sbjct: 350 FLHLLHIFDRTILPTSRTRYTQFLLFYLTSLDASFADLFQGLLLQKALFDADTNAVVRLA 409
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
YV+ + A+ + + L C Y+S L
Sbjct: 410 SVSYVAGFVSRANCVNRDNTRRVVSLL-----------------CEYLSRRL-------- 444
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK--------- 172
L E D TD E FY++ Q + + ++
Sbjct: 445 -----DLEE---------DRTDTRGER---------FYAIAQGIMIIFCFRWRDLQERDT 481
Query: 173 ---HSILVDSKKNMKFLQSLNL--------TRLVMSQLNPLRSCNAEIVSHFASITNTYQ 221
S D + + +++ L R V S LNPL+ C +V FA++
Sbjct: 482 AEDSSDTEDEESAVGPIRTTGLWMPELSVMQRAVTSPLNPLKYCAKHVVHQFAAVAKHTG 541
Query: 222 IVYCYNVIHQNARLNVL 238
+YC+++I N R +L
Sbjct: 542 FLYCHSIIEANRRAGLL 558
>gi|145360786|ref|NP_181457.2| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
gi|91806331|gb|ABE65893.1| RNA polymerase I specific transcription initiation factor RRN3
family protein [Arabidopsis thaliana]
gi|330254555|gb|AEC09649.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
Length = 573
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 80/213 (37%), Gaps = 50/213 (23%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F L FE+ IL T + FL+FY CSL
Sbjct: 287 VFENLFESFENLILNTQKLKFSQFLMFYACSLD--------------------------- 319
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
P + G F L +K + + R + Y++S L A+F+
Sbjct: 320 ---------------PENCGVKFASKLLEKFLSSNNNQVTRTNAVTYLASYLARANFLSA 364
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+ + L + C Y T + P H VFYS CQA+ V+ ++ +++
Sbjct: 365 SFVASMLKRLVDECADYCR----TCNDDARPEVHQVFYSGCQAILYVLCFRMRSILEVP- 419
Query: 182 NMKFLQSLNLTRLVMS-QLNPLRSCNAEIVSHF 213
F L V+S +L+PLR C + +VS F
Sbjct: 420 --HFQSQLTPLESVLSHKLDPLRVCLSSVVSEF 450
>gi|296088515|emb|CBI37506.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 20/216 (9%)
Query: 102 RQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSY--LDNTDLTDEEACSPVKHPVFY 159
R S Y++S L F+ + L + WC Y + + D+ +P H VFY
Sbjct: 369 RMSAVAYLASYLSRGKFLTASFVANILERLVVWCLEYCKIHDGDI------NPKAHQVFY 422
Query: 160 SVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNT 219
S CQA+ V+ ++ +++ L L L ++ L+PL+ C IV F
Sbjct: 423 SGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETILKHPLSPLKVCLPSIVEEFLRQAKA 482
Query: 220 YQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPE 279
++ + V ++L + A G I + LD + PF LL +C I P
Sbjct: 483 ARL---FTVSETFIFSDLLESELSRAFGGIER------LDMFFPFDPCLLKKCDRFIRPN 533
Query: 280 IHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDED 315
+ + T + ++ +P +A H +D
Sbjct: 534 FVYWS---MIRTTYDDGEDSSDEEPAEDYEASHPDD 566
>gi|407929195|gb|EKG22030.1| RNA polymerase I specific transcription initiation factor RRN3
[Macrophomina phaseolina MS6]
Length = 672
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 114/288 (39%), Gaps = 53/288 (18%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL+ F++ ILPT+ H FL+F++ + F + + I R +
Sbjct: 373 FEFLLSQFKNIILPTYRSRHTQFLLFHYAQTTPTFIAQFSAACAELAFDKTRPQIVRLAA 432
Query: 63 CHYVSSLLIH-AHFMPVSI-------GENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLI 114
Y++S + AH ++ G+N F N K ++ R + + +S L+
Sbjct: 433 AAYLASFIARGAHVSRETVREIFIILGKNLDYFRQAHEVNCKGPDLRRYTNFYALSQALL 492
Query: 115 HAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHS 174
+ C + L + D+ D V YS + +++
Sbjct: 493 YIF---------CFRWRDLLTNETLSDADIED----------VLYSNEE-----LSWMPG 528
Query: 175 ILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR 234
I+ K+N + S+ NPL+ C+ +V+ FA I N + +Y + ++ QN R
Sbjct: 529 IVDMMKRN------------IYSKFNPLKVCSPGVVTQFARIANHLRFIYVFPLLEQNKR 576
Query: 235 LNVLPIVSTDALGNIIKLNTV----NA-----LDQYSPFSTFLLVRCK 273
L + +S + + + T N+ LD Y PF + L R K
Sbjct: 577 LRLSRNISAAVMYGVQERETALTAKNSESALQLDSYFPFDPYNLPRSK 624
>gi|225677866|gb|EEH16150.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 657
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 124/351 (35%), Gaps = 87/351 (24%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F++ ILPT+ H FL+F++ ++ + F +C
Sbjct: 352 LLAHFQTIILPTYRSRHTQFLLFHYSQ-----------------SSPIFIDRFATTCVQ- 393
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
+I + P I RQ Y++S + + V++
Sbjct: 394 ----IIFSKSQPT---------------------ILRQYAAAYLASFVARGARVSSEVVR 428
Query: 126 TCLNEMSQWCHS----YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK- 180
+ + S Y N D + P FYS QAL + ++ L ++
Sbjct: 429 DVFDLLGTHLQSLQSEYEPNCRGPDLKRYGP-----FYSTAQALLYIFCFRWRDLTNAAL 483
Query: 181 --------------------KNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITN 218
++ F + L R + S+LNPL+ C+ IVS FA +T+
Sbjct: 484 ESDLSFPPSSSPPHINNLDLDDVHFPPQIKNLLRRTIYSKLNPLKVCSPSIVSEFARLTH 543
Query: 219 TYQIVYCYNVIHQNARL------NVLPIVSTDALGNI---IKLNTVNA--LDQYSPFSTF 267
++Y Y +I N RL N+ + G + IK + LD Y PF +
Sbjct: 544 HLSLMYIYPLIETNKRLRISSFRNLTTLALESRFGQVEREIKADDDAGPLLDAYFPFDPY 603
Query: 268 LLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDDFL 318
L R + I + + + IP + S + ++ D+ L
Sbjct: 604 HLPRSRRWIVGD-YLEWKGIPGVDERGEGEREGSERGFSESEEENGSDEDL 653
>gi|359477042|ref|XP_002263973.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Vitis vinifera]
Length = 636
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 20/216 (9%)
Query: 102 RQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSY--LDNTDLTDEEACSPVKHPVFY 159
R S Y++S L F+ + L + WC Y + + D+ +P H VFY
Sbjct: 378 RMSAVAYLASYLSRGKFLTASFVANILERLVVWCLEYCKIHDGDI------NPKAHQVFY 431
Query: 160 SVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNT 219
S CQA+ V+ ++ +++ L L L ++ L+PL+ C IV F
Sbjct: 432 SGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETILKHPLSPLKVCLPSIVEEFLRQAKA 491
Query: 220 YQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPE 279
++ + V ++L + A G I + LD + PF LL +C I P
Sbjct: 492 ARL---FTVSETFIFSDLLESELSRAFGGIER------LDMFFPFDPCLLKKCDRFIRPN 542
Query: 280 IHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDED 315
+ + T + ++ +P +A H +D
Sbjct: 543 FVYWS---MIRTTYDDGEDSSDEEPAEDYEASHPDD 575
>gi|226287397|gb|EEH42910.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 742
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 111/309 (35%), Gaps = 86/309 (27%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F++ ILPT+ H FL+F++ ++ + F +C
Sbjct: 437 LLAHFQTIILPTYRSRHTQFLLFHYSQ-----------------SSPIFIDRFATTCVQ- 478
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
+I + P I RQ Y++S + + V++
Sbjct: 479 ----IIFSKSQPT---------------------ILRQYAAAYLASFVARGARVSSEVVR 513
Query: 126 TCLNEMSQWCHS----YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK- 180
+ + S Y N D + P FYS QAL + ++ L ++
Sbjct: 514 DVFDLLGTHLQSLQSEYEPNCRGPDLKRYGP-----FYSTAQALLYIFCFRWRDLTNAAL 568
Query: 181 --------------------KNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITN 218
++ F + L R + S+LNPL+ C+ IVS FA +T+
Sbjct: 569 ESDLSFPPSSSPPHINNLDLDDVHFPPQIKNLLRRTIYSKLNPLKVCSPSIVSEFARLTH 628
Query: 219 TYQIVYCYNVIHQNARL------NVLPIVSTDALGNI---IKLNTVNA--LDQYSPFSTF 267
++Y Y +I N RL N+ + G + IK + LD Y PF +
Sbjct: 629 HLSLMYIYPLIETNKRLRISSFRNLTTLALESRFGQVEREIKADDDAGLLLDAYFPFDPY 688
Query: 268 LLVRCKSII 276
L R + I
Sbjct: 689 HLPRSRRWI 697
>gi|320593152|gb|EFX05561.1| RNA polymerase 1 specific transcription initiation factor rrn3
superfamily [Grosmannia clavigera kw1407]
Length = 724
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 33/214 (15%)
Query: 102 RQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVF 158
RQ+ Y+SS + A +P ++ N +S CH +D ++ E C ++
Sbjct: 477 RQAAASYLSSYVARAARVPRDTVR---NVVSILCHR-IDMYRRSNSEGCRGPDLRRYQEL 532
Query: 159 YSVCQALFSVITYKHSILVDSKKNM--------------KFLQSLN--LTRLVMSQLNPL 202
YS QAL + ++ LVDS ++ +++ L LT ++ S NPL
Sbjct: 533 YSWVQALLYIFCFRWRDLVDSHPDIVDPDDPASFVGHEVEWMPGLKQALTNVIYSVFNPL 592
Query: 203 RSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVS-----TDAL----GNIIKLN 253
C+ IVS FA + ++ + +Y + + N +++ VS DAL G ++
Sbjct: 593 MVCSPAIVSEFAKLAHSMRFMYIFPRLESNKSIHLSQFVSGHYGNGDALREDAGYTVEDE 652
Query: 254 TVNALDQYSPFSTFLLVRCKSIITPEIHCQADPI 287
L+ PF +LL K + + + Q PI
Sbjct: 653 KRLQLEGNFPFDPYLLPESKRWLEGD-YLQWTPI 685
>gi|353238295|emb|CCA70246.1| related to RRN3-RNA polymerase I specific transcription factor
[Piriformospora indica DSM 11827]
Length = 854
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 133 QWCHSYLDNTDLTDEEACSPVKHP---------VFYSVCQALFSVITYKHSILVD----- 178
QW +++ + + +P+ VFY+V QA+F + ++ L++
Sbjct: 560 QWADGHMEELEALMSGSSAPLDAATVNAHDELGVFYAVAQAIFLIFCFRWRDLLEQSTED 619
Query: 179 -----SKKNMKFLQSLNLT-RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQN 232
+ K++ LN+ RL+ S LNPL+ C+ +V F+ ++ YC ++I N
Sbjct: 620 DPDEAEEAPKKWIHELNVVQRLITSPLNPLKICSPNVVHQFSRVSEKAGFAYCRSIIEGN 679
Query: 233 AR 234
R
Sbjct: 680 KR 681
>gi|322709029|gb|EFZ00606.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Metarhizium anisopliae ARSEF 23]
Length = 688
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/318 (20%), Positives = 118/318 (37%), Gaps = 85/318 (26%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+F +L F+ +LPT+ H FL+F+F + + F
Sbjct: 386 MFTTILREFDHMVLPTYKSRHTQFLIFHFAQRHERLIDAF-------------------- 425
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
C M + N N+ +Q+ Y++S + +P
Sbjct: 426 -C---------GQLMATAFQSN-------------TPNVLKQAAAAYLASFVARGAHVPP 462
Query: 122 RVIKTC----LNEMSQWCHSYLDNTDLTDEEACSPVK----HPVFYSVCQALFSVITYKH 173
+++T L+ + Q+ Y E C HP +YS+ QA + ++
Sbjct: 463 GLVRTMFTLLLHHLEQYRRKY--------EPLCRGPDLKRFHP-YYSLVQATLYIFCFRW 513
Query: 174 SILV-------DSKKNMKFL-QSL--------NLTRLVMSQLNPLRSCNAEIVSHFASIT 217
LV D + ++ Q L +L+ + +LNPL+ C IV FA +
Sbjct: 514 QDLVVSAPEVVDPEDPASYIGQDLEWIGTSRKDLSVQIFGKLNPLKVCAPVIVDEFAKLA 573
Query: 218 NTYQIVYCYNVIHQNARLNVLPIVS-TDALGNIIK-------LNTVNALDQYSPFSTFLL 269
+ VY Y ++ N R+ + +S T + G ++ + + LD Y PF + L
Sbjct: 574 HRLNFVYIYPLVESNKRVRLTQFLSATYSTGGALRDAGYEGQGESYHQLDPYFPFDPYQL 633
Query: 270 VRCKSIITPE-IHCQADP 286
K + + +H ++ P
Sbjct: 634 PISKRWLADDYVHWKSVP 651
>gi|295663657|ref|XP_002792381.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279051|gb|EEH34617.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 714
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 115/305 (37%), Gaps = 78/305 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F++ ILPT+ H FL+F++ + F + I + I RQ Y
Sbjct: 410 LLAHFQTIILPTYRSRHTQFLLFHYSQSSPIFIDRFATTCVQIIFSKSQPTILRQYAAAY 469
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
++S + ++++ + ++F L+ H ++
Sbjct: 470 LASFVARG----------------ARVSSEVVRDVFD----------LLGTH------LQ 497
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK----- 180
+ +E C DL ++ FYS QAL + ++ L ++
Sbjct: 498 SLQSEYEPNCR----GPDLK--------RYGPFYSTAQALLYIFCFRWRDLTNAALENDL 545
Query: 181 ----------------KNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQI 222
++ F + L R + S+LNPL+ C+ IVS FA +T+ +
Sbjct: 546 SFPPSSSSPHINNLDLDDVHFPPQIKNLLRRTIYSKLNPLKVCSPSIVSEFARLTHHLSL 605
Query: 223 VYCYNVIHQNARL------NVLPIVSTDALGNI---IKLNTVNA--LDQYSPFSTFLLVR 271
+Y Y +I N RL N+ + G + IK + LD Y PF + L R
Sbjct: 606 MYIYPLIETNKRLRISSFRNLTTLALESRFGQVEREIKADDDAGPLLDAYFPFDPYHLPR 665
Query: 272 CKSII 276
+ I
Sbjct: 666 SRRWI 670
>gi|302916639|ref|XP_003052130.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733069|gb|EEU46417.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 684
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 108/296 (36%), Gaps = 78/296 (26%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSC 62
F LL F+ +LPT+ H FL+F+F + + + F C
Sbjct: 385 FTVLLREFDHMVLPTYKSRHTQFLIFHFAQMHERLTDAF--------------------C 424
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
+++ N+ +Q+ Y++S + +P
Sbjct: 425 GQLIATAF-----------------------QSNTPNVLKQAAAAYLASFVARGSHLPGS 461
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK----HPVFYSVCQALFSVITYKHSILVD 178
+I+ + +LD E C HP +YS+ QA + ++ L+
Sbjct: 462 LIRNIFGLLLH----HLDTYRKKYEPLCRGPDLKRFHP-YYSLVQATLYIFCFRWQDLIV 516
Query: 179 S--------------KKNMKFLQS--LNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQI 222
S + M+++ + +L+ + +LNPL+ C IV FA I +
Sbjct: 517 STPEFVDRDDPASYIGQEMEWMGTCRKDLSIQIFGKLNPLKVCAPVIVEEFAKIAHRLNF 576
Query: 223 VYCYNVIHQNARLNVLPIVST---------DALGNIIKLNTVNALDQYSPFSTFLL 269
+Y Y ++ N R+ + +S DA G ++ + + LD Y PF + L
Sbjct: 577 MYVYPLVEGNKRVRLTQYLSATYSTGGALRDA-GYEMQDESYHQLDPYFPFDPYQL 631
>gi|219118065|ref|XP_002179815.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408868|gb|EEC48801.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 723
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 131/365 (35%), Gaps = 106/365 (29%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFI-------EFLWKKIANVKIY--- 55
L FES+I+ TH V FL+ + C L E+ L++K A+ I+
Sbjct: 353 LAQFFESSIIITHKSKFVQFLIVHVCGLENKALESASCQNDQSPAILYRKFASSLIHVIV 412
Query: 56 -----NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVS 110
+ RQ+ Y++S + A F + ++CC V
Sbjct: 413 DPYRATVTRQAAACYLASFVSRASF------------------------VCEETCCESVC 448
Query: 111 SLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK----HPVFYSVCQALF 166
+LL +W +Y+ + D A + H +FY++ QA F
Sbjct: 449 ALL-------------------RWGEAYMQSLDSLSVHAADAREQCNFHSLFYTISQAAF 489
Query: 167 SVITYKHSILVD-SKKNMK-----FLQSLNL-------TRLVMSQLNPLRSCNAEIVSHF 213
++ ++ ++ +K+ K F Q +L T L L PLR C + + F
Sbjct: 490 YIMCFRGVEAIEFYRKSTKPSSDGFAQPEHLDISPERWTSLCSHPLQPLRYCLESVRNEF 549
Query: 214 ASITN----TYQIVYCY------NVIHQNARLNVLPIVSTDALGN-------IIKLNTVN 256
++ IVYC NV+ +N R V PI + L N
Sbjct: 550 LELSKFCHLINAIVYCQLAQDENNVVKRNKR-QVTPIATPATLEKERLSGGVGGLGKGTN 608
Query: 257 ALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL-----IADPVSSKQAD 311
LD + PF +LL + H DP N + T+ + + +P + D
Sbjct: 609 PLDSFFPFDPYLLRKS--------HVFVDPFYNHWNGSITERFMKDEDSVLNPSDEQHVD 660
Query: 312 HDEDD 316
DE D
Sbjct: 661 DDESD 665
>gi|224084016|ref|XP_002307198.1| predicted protein [Populus trichocarpa]
gi|222856647|gb|EEE94194.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 20/183 (10%)
Query: 100 IFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFY 159
+ R S Y+SS L F+ + L + WC Y + D +P H VFY
Sbjct: 378 VTRMSAVAYLSSYLARGKFLSAAFVMNMLKRLVDWCLRYCEEQD----SDMNPKAHQVFY 433
Query: 160 SVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHF---ASI 216
S CQ + V+ + +++ L + + ++ +L PL C IV+ F A
Sbjct: 434 SACQGIMYVLCFHMKSIMNVPTLKSQLLLMPIEPILKHKLGPLEVCLPSIVNEFLKQAKA 493
Query: 217 TNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRC-KSI 275
+ + I + I ++ ++ +D + + LD + PF LL +C +
Sbjct: 494 AHLFTISKAF--IFED-------LLESDLSRD---FGGLERLDMFFPFDPCLLKKCDRGF 541
Query: 276 ITP 278
I P
Sbjct: 542 IRP 544
>gi|219129883|ref|XP_002185107.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403286|gb|EEC43239.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 745
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 131/365 (35%), Gaps = 106/365 (29%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFI-------EFLWKKIANVKIY--- 55
L FES+I+ TH V FL+ + C L E+ L++K A+ I+
Sbjct: 353 LAQFFESSIIITHKSKFVQFLIVHVCGLENKALESASCQNDQSPAILYRKFASSLIHVIV 412
Query: 56 -----NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVS 110
+ RQ+ Y++S + A F + ++CC V
Sbjct: 413 DPYRATVTRQAAACYLASFVSRASF------------------------VCEETCCESVC 448
Query: 111 SLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK----HPVFYSVCQALF 166
+LL +W +Y+ + D A + H +FY++ QA F
Sbjct: 449 ALL-------------------RWGEAYMQSLDSLSVHAADAREQCNFHSLFYTISQAAF 489
Query: 167 SVITYKHSILVD-SKKNMK-----FLQSLNL-------TRLVMSQLNPLRSCNAEIVSHF 213
++ ++ ++ +K+ K F Q +L T L L PLR C + + F
Sbjct: 490 YIMCFRGVEAIEFYRKSTKPSSDGFAQPEHLDISPERWTSLCSHPLQPLRYCLESVRNEF 549
Query: 214 ASITN----TYQIVYCY------NVIHQNARLNVLPIVSTDALGN-------IIKLNTVN 256
++ IVYC NV+ +N R V PI + L N
Sbjct: 550 LELSKFCHLINAIVYCQLAQDENNVVKRNKR-QVTPIATPATLEKERLSGGVGGLGKGTN 608
Query: 257 ALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL-----IADPVSSKQAD 311
LD + PF +LL + H DP N + T+ + + +P + D
Sbjct: 609 PLDSFFPFDPYLLRKS--------HVFVDPFYNHWNGSITERFMKDEDSVLNPSDEQHVD 660
Query: 312 HDEDD 316
DE D
Sbjct: 661 DDESD 665
>gi|440635126|gb|ELR05045.1| hypothetical protein GMDG_01616 [Geomyces destructans 20631-21]
Length = 695
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 75/284 (26%)
Query: 3 FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYN----IF 58
F+ LL+ F + ILPT+ H FL+F+F E+ I+ + ++ + +
Sbjct: 384 FDTLLSHFRNIILPTYRSRHTQFLLFHFAQ----TSEHLIDTFAGECVDLAFKSGRPAVL 439
Query: 59 RQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHF 118
+QS Y++S VS G N + + + ++F Y+ + L
Sbjct: 440 KQSAAAYLASF--------VSRGANVLPHV--------VRDVF-----DYIGTNL----- 473
Query: 119 MPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVD 178
+I++ NE+S C DL ++ FY+ QAL + ++ LV
Sbjct: 474 ---DLIRSE-NELS--CR----GPDLQ--------RYSTFYATTQALLYIFCFRWRDLVV 515
Query: 179 S--------------KKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQI 222
S +++++ + L R + S+LNPL+ C IV FA I + +
Sbjct: 516 SPSAEEGEIDEEDFVGRDLEWRAGVKELLDRTIYSKLNPLKICAPSIVEEFAKIAHHLRF 575
Query: 223 VYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFST 266
+Y Y ++ N R+ +S ALG N + L + S FST
Sbjct: 576 MYVYPLLATNKRIR----LSQFALG---AGNASSGLLRDSGFST 612
>gi|392350976|ref|XP_003750807.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Rattus norvegicus]
Length = 161
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 218 NTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIIT 277
+ YQ+V+CY ++ +N R +LP++ + A G+ ++ T N LD + PF +L R K I
Sbjct: 21 SKYQLVFCYTIMERNNR-QMLPVIRSTAGGDSVQTCT-NPLDTFFPFDPCMLKRSKKFID 78
Query: 278 PEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDDFL 318
P D + Q L P + + ++DDFL
Sbjct: 79 PVYQAWED-----MSDEELQEL--RKPTRKELVEDEDDDFL 112
>gi|240279710|gb|EER43215.1| RNA polymerase I-specific transcription initiation factor RRN3
[Ajellomyces capsulatus H143]
Length = 741
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 40/210 (19%)
Query: 100 IFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHP 156
I RQ Y++S + + V++ + + ++L N E C ++
Sbjct: 482 IIRQYAAAYLASFVARGAHVSSEVVRDVFDLLG----THLQNLQAEYEPTCRGPDLKRYG 537
Query: 157 VFYSVCQALFSVITYKHSILVDSK--------------------KNMKFLQSLN--LTRL 194
FYS QAL + ++ L + + +F + L+
Sbjct: 538 PFYSTAQALLYIFCFRWRDLTTAALDADITTTPASSTWLYDLDLDDARFPPQIKNVLSPA 597
Query: 195 VMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDAL------GN 248
+ S+LNPL+ C+ IVS FA +T+ +Y Y +I N R+ + S L GN
Sbjct: 598 INSKLNPLKICSPAIVSEFARLTHHLHFMYLYTLIETNKRIRISSFRSRAVLAMQSRFGN 657
Query: 249 IIKLNTVN-----ALDQYSPFSTFLLVRCK 273
+ + + LD Y PF + L R +
Sbjct: 658 VEREIKADDDLGPQLDAYFPFDPYHLPRSR 687
>gi|256078060|ref|XP_002575316.1| hypothetical protein [Schistosoma mansoni]
gi|353232809|emb|CCD80165.1| hypothetical protein Smp_143670 [Schistosoma mansoni]
Length = 623
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 49/228 (21%)
Query: 2 LFNELLAVFESTILPTH-GITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
+F + +F ILP + + P + FY CSLR + NFI+FLW NI +
Sbjct: 326 IFRRVRDLFSEHILPVNVTMVAFPMICFYICSLRGGLVINFIDFLW---------NIIKD 376
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
C S L+ Y+ LL++ F
Sbjct: 377 HCRDQGSRLM----------------------------------ALSYLCFLLVNGKFCF 402
Query: 121 VRVIKTCLNEMSQWC--HSYLDNTDL--TDEEACSPVKHPVFYSVCQALFSVITYKHSIL 176
+ +I +++M+ WC ++Y L S + ++Y++C L + HS L
Sbjct: 403 IDLIIEIMHDMATWCIDYAYRHRGVLMTASNSTTSLSDNKLYYAICNVLIYIFVQLHSEL 462
Query: 177 VDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVY 224
+D ++ + L + ++ +S PL E+ F I +TY + +
Sbjct: 463 LDD-EHFQSCNRLPIAQISISPFKPLVHIPKELRQLFFRIISTYHLSW 509
>gi|225562885|gb|EEH11164.1| RNA polymerase I-specific transcription initiation factor RRN3
[Ajellomyces capsulatus G186AR]
Length = 741
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 40/210 (19%)
Query: 100 IFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHP 156
I RQ Y++S + + V++ + + ++L N E C ++
Sbjct: 482 IIRQYAAAYLASFVARGAHVSSEVVRDVFDLLG----THLQNLQAEYEPTCRGPDLKRYG 537
Query: 157 VFYSVCQALFSVITYKHSILVDSK--------------------KNMKFLQSLN--LTRL 194
FYS QAL + ++ L + + +F + L+
Sbjct: 538 PFYSTAQALLYIFCFRWRDLTTAALDADITTTPASSTWLYDLDLDDARFPPQIKNVLSPA 597
Query: 195 VMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDAL------GN 248
+ S+LNPL+ C+ IVS FA +T+ +Y Y +I N R+ + S L GN
Sbjct: 598 INSKLNPLKICSPAIVSEFARLTHHLHFMYLYTLIETNKRIRISSFRSRAVLAMQSRFGN 657
Query: 249 IIKLNTVN-----ALDQYSPFSTFLLVRCK 273
+ + + LD Y PF + L R +
Sbjct: 658 VEREIKADDDLGPQLDAYFPFDPYHLPRSR 687
>gi|325092839|gb|EGC46149.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 769
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 40/211 (18%)
Query: 99 NIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKH 155
I RQ Y++S + + V++ + + ++L N E C ++
Sbjct: 509 TIIRQYAAAYLASFVARGAHVSSEVVRDVFDLLG----THLQNLQAEYEPTCRGPDLKRY 564
Query: 156 PVFYSVCQALFSVITYKHSILVDSK--------------------KNMKFLQSLN--LTR 193
FYS QAL + ++ L + + +F + L+
Sbjct: 565 GPFYSTAQALLYIFCFRWRDLTTAALDADITTTPASSTWLYDLDLDDARFPPQIKNVLSP 624
Query: 194 LVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDAL------G 247
+ S+LNPL+ C+ IVS FA +T+ +Y Y +I N R+ + S L G
Sbjct: 625 AINSKLNPLKICSPAIVSEFARLTHHLHFMYLYTLIETNKRIRISSFRSRAVLAMQSRFG 684
Query: 248 NIIKLNTVN-----ALDQYSPFSTFLLVRCK 273
N+ + + LD Y PF + L R +
Sbjct: 685 NVEREIKADDDLGPQLDAYFPFDPYHLPRSR 715
>gi|154280100|ref|XP_001540863.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Ajellomyces capsulatus NAm1]
gi|150412806|gb|EDN08193.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 632
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 40/210 (19%)
Query: 100 IFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHP 156
I RQ Y++S + + V++ + + ++L N E C ++
Sbjct: 373 IIRQYAAAYLASFVARGAHVSSEVVRDVFDLLG----THLQNLQAEYEPTCRGPDLKRYG 428
Query: 157 VFYSVCQALFSVITYKHSILVDSK--------------------KNMKFLQSLN--LTRL 194
FYS QAL + ++ L + + +F + L+
Sbjct: 429 PFYSTAQALLYIFCFRWRDLTTAALDADITTTPASSAWLYDLDLDDARFPPQIKNVLSPA 488
Query: 195 VMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDAL------GN 248
+ S+LNPL+ C+ IVS FA +T+ +Y Y +I N R+ + S L GN
Sbjct: 489 INSKLNPLKICSPAIVSEFARLTHHLHFMYLYTLIETNKRIRISSFRSRAVLAMQSRFGN 548
Query: 249 IIKLNTVN-----ALDQYSPFSTFLLVRCK 273
+ + + LD Y PF + L R +
Sbjct: 549 VEREIKADDDLGPQLDAYFPFDPYHLPRSR 578
>gi|238609477|ref|XP_002397496.1| hypothetical protein MPER_02067 [Moniliophthora perniciosa FA553]
gi|215472053|gb|EEB98426.1| hypothetical protein MPER_02067 [Moniliophthora perniciosa FA553]
Length = 123
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 21/99 (21%)
Query: 157 VFYSVCQALFSVITYK-HSILVDSKKN-------------------MKFLQSLNLT-RLV 195
VFY+V QA+F + ++ +LV+S++ K+L L + R+V
Sbjct: 16 VFYAVAQAVFLIFCFRWRDLLVESEEGDADAPSQTEDTPTAGPGPGQKWLPELAIVQRVV 75
Query: 196 MSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR 234
MS LNPLR+ + + FA + + +Y Y+++ N R
Sbjct: 76 MSPLNPLRAISQAVAKQFAKVAHATGFLYVYSIMESNKR 114
>gi|119189373|ref|XP_001245293.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Coccidioides immitis RS]
Length = 697
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 111/292 (38%), Gaps = 68/292 (23%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F++ ILPT+ H FL+F++ + + F + I + ++ RQ Y
Sbjct: 404 LLAHFQNIILPTYRSRHSQFLLFHYSQSSPILVDRFAAACIQIILSKSHPSVLRQYAAAY 463
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
++S + + + + ++F C H +K
Sbjct: 464 LASFVARGAHVTSEV----------------VRDVFDLLCTH----------------LK 491
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNM 183
+ E C DL ++ FY+ QA+ + ++ L + + ++
Sbjct: 492 NLITEYEPNCR----GPDLR--------RYATFYATAQAILYIFCFRWRDLTTAAQEGDI 539
Query: 184 KFLQSLNLTRL-------------VMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIH 230
L+L ++ + S+LNPL+ C+ IV FA I + +Y + ++
Sbjct: 540 DIHVELDLDQVRFPPNISDVLHTAIHSKLNPLKICSPSIVREFARIAHHVGFMYVFPLLE 599
Query: 231 QNARLNVLPIVSTDAL----GNIIKLNTVN-----ALDQYSPFSTFLLVRCK 273
N R+ + S+ ++ G I + + LD Y PF + L R +
Sbjct: 600 TNKRIRIFTFRSSMSMDSRFGQIERETRADNDLGPQLDAYFPFDPYNLPRSR 651
>gi|303323137|ref|XP_003071560.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240111262|gb|EER29415.1| RNA polymerase I specific transcription initiation factor RRN3
family protein [Coccidioides posadasii C735 delta SOWgp]
Length = 697
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 111/292 (38%), Gaps = 68/292 (23%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F++ ILPT+ H FL+F++ + + F + I + ++ RQ Y
Sbjct: 404 LLAHFQNIILPTYRSRHSQFLLFHYSQSSPILVDRFAAACIQIILSKSHPSVLRQYAAAY 463
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
++S + + + + ++F C H +K
Sbjct: 464 LASFVARGAHVTSEV----------------VRDVFDLLCTH----------------LK 491
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNM 183
+ E C DL ++ FY+ QA+ + ++ L + + ++
Sbjct: 492 NLITEYESNCR----GPDLR--------RYATFYATAQAILYIFCFRWRDLTTAAQEGDI 539
Query: 184 KFLQSLNLTRL-------------VMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIH 230
L+L ++ + S+LNPL+ C+ IV FA I + +Y + ++
Sbjct: 540 DIHVELDLDQVRFPPNISDVLHTAIHSKLNPLKICSPSIVREFARIAHHVGFMYVFPLLE 599
Query: 231 QNARLNVLPIVSTDAL----GNIIKLNTVN-----ALDQYSPFSTFLLVRCK 273
N R+ + S+ ++ G I + + LD Y PF + L R +
Sbjct: 600 TNKRIRIFTFRSSMSMDSRFGQIERETRADNDLGPQLDAYFPFDPYNLPRSR 651
>gi|320033389|gb|EFW15337.1| RNA polymerase I specific transcription initiation factor RRN3
[Coccidioides posadasii str. Silveira]
Length = 706
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 111/292 (38%), Gaps = 68/292 (23%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F++ ILPT+ H FL+F++ + + F + I + ++ RQ Y
Sbjct: 413 LLAHFQNIILPTYRSRHSQFLLFHYSQSSPILVDRFAAACIQIILSKSHPSVLRQYAAAY 472
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
++S + + + + ++F C H +K
Sbjct: 473 LASFVARGAHVTSEV----------------VRDVFDLLCTH----------------LK 500
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNM 183
+ E C DL ++ FY+ QA+ + ++ L + + ++
Sbjct: 501 NLITEYESNCR----GPDLR--------RYATFYATAQAILYIFCFRWRDLTTAAQEGDI 548
Query: 184 KFLQSLNLTRL-------------VMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIH 230
L+L ++ + S+LNPL+ C+ IV FA I + +Y + ++
Sbjct: 549 DIHVELDLDQVRFPPNISDVLHTAIHSKLNPLKICSPSIVREFARIAHHVGFMYVFPLLE 608
Query: 231 QNARLNVLPIVSTDAL----GNIIKLNTVN-----ALDQYSPFSTFLLVRCK 273
N R+ + S+ ++ G I + + LD Y PF + L R +
Sbjct: 609 TNKRIRIFTFRSSMSMDSRFGQIERETRADNDLGPQLDAYFPFDPYNLPRSR 660
>gi|392868193|gb|EAS33941.2| hypothetical protein CIMG_04734 [Coccidioides immitis RS]
Length = 706
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 111/292 (38%), Gaps = 68/292 (23%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LLA F++ ILPT+ H FL+F++ + + F + I + ++ RQ Y
Sbjct: 413 LLAHFQNIILPTYRSRHSQFLLFHYSQSSPILVDRFAAACIQIILSKSHPSVLRQYAAAY 472
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
++S + + + + ++F C H +K
Sbjct: 473 LASFVARGAHVTSEV----------------VRDVFDLLCTH----------------LK 500
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNM 183
+ E C DL ++ FY+ QA+ + ++ L + + ++
Sbjct: 501 NLITEYEPNCR----GPDLR--------RYATFYATAQAILYIFCFRWRDLTTAAQEGDI 548
Query: 184 KFLQSLNLTRL-------------VMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIH 230
L+L ++ + S+LNPL+ C+ IV FA I + +Y + ++
Sbjct: 549 DIHVELDLDQVRFPPNISDVLHTAIHSKLNPLKICSPSIVREFARIAHHVGFMYVFPLLE 608
Query: 231 QNARLNVLPIVSTDAL----GNIIKLNTVN-----ALDQYSPFSTFLLVRCK 273
N R+ + S+ ++ G I + + LD Y PF + L R +
Sbjct: 609 TNKRIRIFTFRSSMSMDSRFGQIERETRADNDLGPQLDAYFPFDPYNLPRSR 660
>gi|297827511|ref|XP_002881638.1| hypothetical protein ARALYDRAFT_321615 [Arabidopsis lyrata subsp.
lyrata]
gi|297327477|gb|EFH57897.1| hypothetical protein ARALYDRAFT_321615 [Arabidopsis lyrata subsp.
lyrata]
Length = 584
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 82/217 (37%), Gaps = 60/217 (27%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLR-LSIGENFIEFLWKKIANVKIYNIFRQ 60
+F L FE+ IL T FL+FY CSL S G F K+ +IF
Sbjct: 304 VFENLFVSFENLILNTQKTKISQFLMFYACSLDPKSCGVKFAS---------KLLDIFLS 354
Query: 61 SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
S H V+ R + Y++S L A F+P
Sbjct: 355 SNKHQVT----------------------------------RTNAVAYLASYLARAKFLP 380
Query: 121 VRVIKTCLNEMSQWCHSYLD--NTDLTDEEACSPVKHPVFYSVCQALFSVITYK-HSILV 177
+ + L + C Y N D+ EE H FYS CQA+ V+ ++ SIL
Sbjct: 381 TSFVASMLKRLVDECADYCRTCNDDVRPEE------HQDFYSGCQAILYVLCFRMRSILA 434
Query: 178 DSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHF 213
+FL L L + +SQ P+ C +VS F
Sbjct: 435 VP----RFLSQLTPLESVFISQTRPV--CLPSVVSEF 465
>gi|145351285|ref|XP_001420013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580246|gb|ABO98306.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 761
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 78/210 (37%), Gaps = 31/210 (14%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
L+ F T+LP V FLVF+ CS E L+ K+ +V + R + Y
Sbjct: 345 LIHAFTVTLLPAPRSKFVQFLVFHLCSRDERACRELTELLFTKLTDVSVAGSIRLAAAAY 404
Query: 66 VSSLLIHA-HFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVI 124
+S L A H P F+ L +++ V L+H +
Sbjct: 405 FASFLARAKHLKP-----EFVCELLRRL----------------VDWCLVH--------V 435
Query: 125 KTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK-HSILVDSKKNM 183
K S + T + VF S CQA V+ Y+ I+ +
Sbjct: 436 KQRTTPGSAALSGATEKTKVGMPPPVPQQTLAVFDSACQAAMYVLCYRAEDIMRAEGSSA 495
Query: 184 KFLQSLNLTRLVMSQLNPLRSCNAEIVSHF 213
L+SL L ++ S L PL +C +V+ F
Sbjct: 496 MTLRSLPLCEVLYSHLRPLSTCLPSVVTEF 525
>gi|258566131|ref|XP_002583810.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907511|gb|EEP81912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 702
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 115/296 (38%), Gaps = 76/296 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF----IEFLWKKIANVKIYNIFRQS 61
LLA F++ ILP + H FL+F++ + + F I+F++ K ++ RQ
Sbjct: 408 LLAHFQNIILPAYRSRHSQFLLFHYSQSSPILIDRFATVCIQFIYSKSHP----SVLRQY 463
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S + + + + ++F C H
Sbjct: 464 AAAYLASFVARGAHVTSEV----------------VRDVFDLLCAH-------------- 493
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
+++ ++E C DL ++ FY+ QA+ + ++ L + +
Sbjct: 494 --LESLISEYGPNCR----GPDLR--------RYATFYATVQAVLYMFCFRWRDLTTAAQ 539
Query: 182 NMKF-LQS-LNLT-------------RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
LQS L+L R + S+LNPL+ C+ IV FA I + +Y +
Sbjct: 540 EGDINLQSELDLDQVRFPPDISNVLHRAIHSKLNPLKICSPTIVREFARIAHHVGFMYVF 599
Query: 227 NVIHQNARLNVLPI---VSTDALGNIIKLNT------VNALDQYSPFSTFLLVRCK 273
++ N R+ + +S D+ I+ T + +D Y PF + L R +
Sbjct: 600 PLLETNKRIRIFTFRSSISMDSRFGQIERETRADNSLGSQMDAYFPFDPYNLPRSR 655
>gi|327350290|gb|EGE79147.1| ribosomal DNA transcription factor Rrn3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 762
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 108/301 (35%), Gaps = 77/301 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F++ ILPT+ H FL+F++ + F + I + I RQ Y
Sbjct: 452 LLSHFQTIILPTYRSRHTQFLLFHYSQSSPIFIDRFATTCVQIIFSKSQPTIIRQYAAAY 511
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
++S + + + + + L + N++
Sbjct: 512 LASFVARGAHVSSEVVRDVFDLLGTHLKNLQ----------------------------- 542
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK----- 180
NE C DL ++ FYS QAL + ++ L +
Sbjct: 543 ---NEYEPTCR----GPDLK--------RYGPFYSTAQALLYIFCFRWRDLTTAALEADI 587
Query: 181 ---------------KNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
+ +F + L + S+LNPL+ C+ IVS FA +T+ +
Sbjct: 588 TITPASSDWLDNLDLDDARFPPQIKDVLHPAINSKLNPLKICSPAIVSEFARLTHHLGFM 647
Query: 224 YCYNVIHQNARLNVLPIVSTDAL------GNIIKLNTVN-----ALDQYSPFSTFLLVRC 272
Y Y++I N R+ + S AL G++ + + LD Y PF + L R
Sbjct: 648 YLYSLIETNKRVRISSFRSLTALAMESRFGHVERETKADDDMGPQLDAYFPFDPYHLPRS 707
Query: 273 K 273
+
Sbjct: 708 R 708
>gi|239609472|gb|EEQ86459.1| ribosomal DNA transcription factor Rrn3 [Ajellomyces dermatitidis
ER-3]
Length = 746
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 108/301 (35%), Gaps = 77/301 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F++ ILPT+ H FL+F++ + F + I + I RQ Y
Sbjct: 434 LLSHFQTIILPTYRSRHTQFLLFHYSQSSPIFIDRFATTCVQIIFSKSQPTIIRQYAAAY 493
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
++S + + + + + L + N++
Sbjct: 494 LASFVARGAHVSSEVVRDVFDLLGTHLKNLQ----------------------------- 524
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK----- 180
NE C DL ++ FYS QAL + ++ L +
Sbjct: 525 ---NEYEPTCR----GPDLK--------RYGPFYSTAQALLYIFCFRWRDLTTAALEADI 569
Query: 181 ---------------KNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
+ +F + L + S+LNPL+ C+ IVS FA +T+ +
Sbjct: 570 TITPASSDWLDNLDLDDARFPPQIKDVLHPAINSKLNPLKICSPAIVSEFARLTHHLGFM 629
Query: 224 YCYNVIHQNARLNVLPIVSTDAL------GNIIKLNTVN-----ALDQYSPFSTFLLVRC 272
Y Y++I N R+ + S AL G++ + + LD Y PF + L R
Sbjct: 630 YLYSLIETNKRVRISSFRSLTALAMESRFGHVERETKADDDMGPQLDAYFPFDPYHLPRS 689
Query: 273 K 273
+
Sbjct: 690 R 690
>gi|261196500|ref|XP_002624653.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Ajellomyces dermatitidis SLH14081]
gi|239595898|gb|EEQ78479.1| ribosomal DNA transcription factor Rrn3 [Ajellomyces dermatitidis
SLH14081]
Length = 748
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 108/301 (35%), Gaps = 77/301 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
LL+ F++ ILPT+ H FL+F++ + F + I + I RQ Y
Sbjct: 436 LLSHFQTIILPTYRSRHTQFLLFHYSQSSPIFIDRFATTCVQIIFSKSQPTIIRQYAAAY 495
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
++S + + + + + L + N++
Sbjct: 496 LASFVARGAHVSSEVVRDVFDLLGTHLKNLQ----------------------------- 526
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK----- 180
NE C DL ++ FYS QAL + ++ L +
Sbjct: 527 ---NEYEPTCR----GPDLK--------RYGPFYSTAQALLYIFCFRWRDLTTAALEADI 571
Query: 181 ---------------KNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
+ +F + L + S+LNPL+ C+ IVS FA +T+ +
Sbjct: 572 TITPASSDWLDNLDLDDARFPPQIKDVLHPAINSKLNPLKICSPAIVSEFARLTHHLGFM 631
Query: 224 YCYNVIHQNARLNVLPIVSTDAL------GNIIKLNTVN-----ALDQYSPFSTFLLVRC 272
Y Y++I N R+ + S AL G++ + + LD Y PF + L R
Sbjct: 632 YLYSLIETNKRVRISSFRSLTALAMESRFGHVERETKADDDMGPQLDAYFPFDPYHLPRS 691
Query: 273 K 273
+
Sbjct: 692 R 692
>gi|346320593|gb|EGX90193.1| RNA polymerase I specific transcription initiation factor RRN3,
putative [Cordyceps militaris CM01]
Length = 684
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 42/221 (19%)
Query: 99 NIFRQSCCHYVSSLLIHAHFMPVRVIKT----CLNEMSQWCHSYLDNTDLTDEEACSPVK 154
N+ +Q+ Y++S + +P ++++ L+ + Q+ Y E C
Sbjct: 439 NVLKQAAAAYLASFVARGAQVPRDLVRSIFELLLHHLGQYRRKY--------EPLCRGPD 490
Query: 155 ----HPVFYSVCQALFSVITYKHSILVDS--------------KKNMKFLQSL--NLTRL 194
HP +YS+ QA + ++ LV + ++++++ S +L+
Sbjct: 491 LKRFHP-YYSLVQATLYIFCFRWQDLVVAAPDAVDADDAASYIGQDLEWIGSTRKDLSVH 549
Query: 195 VMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVS-TDALGNIIK-- 251
+ +LNPL+ C IV FA + + +Y Y ++ N R+ + +S T A G ++
Sbjct: 550 IFGKLNPLKVCAPVIVEEFARLAHRLNFMYVYPLVESNKRVRLTQFLSATYATGGALRDA 609
Query: 252 -----LNTVNALDQYSPFSTFLLVRCKSIITPE-IHCQADP 286
+ + LD Y PF + L K + + IH ++ P
Sbjct: 610 GHEGQGESFHQLDSYFPFDPYQLPVSKRWLDNDYIHWKSVP 650
>gi|348681118|gb|EGZ20934.1| hypothetical protein PHYSODRAFT_328981 [Phytophthora sojae]
Length = 786
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 1 VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
++F LL VFE +IL TH + FL+FY C + + FI L + RQ
Sbjct: 358 LIFKYLLKVFEHSILNTHRSKYPQFLLFYVCRMDPQFQDIFISQLLTTSLDPHTPPTTRQ 417
Query: 61 SCCHYVSSLLIHAHFMPVS 79
SC Y++S L A ++ V+
Sbjct: 418 SCGAYLASFLARAKYISVA 436
>gi|298706668|emb|CBJ29597.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 880
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L LL VFE ILPTH V F++F+ +G + L + + + RQS
Sbjct: 318 LLKSLLLVFEENILPTHRSKFVQFVLFFASGRARGLGYALVSKLVGVLGDESRPKLTRQS 377
Query: 62 CCHYVSSLLIHAHFMPVSI 80
Y++S L A F+ S+
Sbjct: 378 SVAYLASFLARASFVDPSL 396
>gi|119607546|gb|EAW87140.1| hCG15529, isoform CRA_c [Homo sapiens]
Length = 110
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 218 NTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIIT 277
+ YQ+V+CY +I +N R +LP++ + G+ ++ T N LD + PF +L R K I
Sbjct: 24 SKYQLVFCYTIIERNNR-QMLPVIRSTTGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFID 81
Query: 278 P 278
P
Sbjct: 82 P 82
>gi|164657718|ref|XP_001729985.1| hypothetical protein MGL_2971 [Malassezia globosa CBS 7966]
gi|159103879|gb|EDP42771.1| hypothetical protein MGL_2971 [Malassezia globosa CBS 7966]
Length = 588
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 193 RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNA 233
R + S LNP+R CNA +V FA + +YCY+V+ NA
Sbjct: 377 RAITSPLNPIRYCNAHVVQQFAYVAQYTDFLYCYSVMEANA 417
>gi|308808830|ref|XP_003081725.1| RNA polymerase I transcription factor (ISS) [Ostreococcus tauri]
gi|116060191|emb|CAL56250.1| RNA polymerase I transcription factor (ISS) [Ostreococcus tauri]
Length = 631
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 78/224 (34%), Gaps = 59/224 (26%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
L+ F+ T+LP V FLVF+ CS Q+C
Sbjct: 339 LMHAFKVTLLPAPRSKFVQFLVFHMCSRD------------------------EQAC--- 371
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
E L+ + +V R + Y +S L A + +
Sbjct: 372 ----------------RELTEELFTTLTDVSAAGSLRLAAAAYFASFLARAKHLTPDFVC 415
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACS----------PVKHP-----VFYSVCQALFSVIT 170
L + WC S++ A S P P VF S CQA+ V+
Sbjct: 416 DMLKRLVDWCASHVKQKTTPGSAALSGAQEKTVVGMPPPEPHQTLAVFDSACQAMMYVLC 475
Query: 171 YKHSILVDSKKNMKF-LQSLNLTRLVMSQLNPLRSCNAEIVSHF 213
Y+ ++ ++ + L++L L ++ S L PL +C +V+ F
Sbjct: 476 YRAEDILHTEGSAAMTLRTLPLCEVLYSHLRPLHTCLPSVVTEF 519
>gi|118369166|ref|XP_001017788.1| hypothetical protein TTHERM_00438910 [Tetrahymena thermophila]
gi|89299555|gb|EAR97543.1| hypothetical protein TTHERM_00438910 [Tetrahymena thermophila
SB210]
Length = 762
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKI--ANVKIYNIFR 59
F L VF IL TH +V F++FY CSLR S F+ L K I N IY +
Sbjct: 305 FFKIFLNVFSEQILITHQSKYVQFIIFYLCSLRNSFQNAFLNHLVKNITEKNPLIYKSTQ 364
Query: 60 QSCCHYVSSLLIHAHFMPVSIGENFIEFL 88
+ +Y+ S + A ++ E+L
Sbjct: 365 INSIYYLGSYIARAKYIENETIRKIFEYL 393
>gi|395747518|ref|XP_002826196.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 133
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 220 YQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPE 279
YQ+V+CY +I +N R +LP++ + A G+ ++ T N LD + PF +L R I P
Sbjct: 2 YQLVFCYTIIERNNR-QMLPVIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRXXXFIDPI 59
Query: 280 IHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDDFLMS 320
D + Q P+ + + ++DDFL
Sbjct: 60 YQVWED-----MSAEELQEF--KKPMRKEIVEDEDDDFLKG 93
>gi|187611446|sp|A6NIE6.3|RN3P2_HUMAN RecName: Full=Putative RRN3-like protein RRN3P2; AltName: Full=RNA
polymerase I transcription factor homolog pseudogene 2
Length = 340
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 35 LSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGE 82
+ E F+E LWKK+ + I RQ+ +Y+ S L A F+P+ I E
Sbjct: 262 MGFAEAFLEPLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLMIRE 309
>gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis]
Length = 845
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 128 LNEMSQWCHSYLDNTDLTDEEACSPVKHPVF------YSVCQALFSVITYKHSILVDSKK 181
L+E+ C +YLDN D+T EE VK P F Y + + +T + +++ +K
Sbjct: 186 LSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMRAKA 245
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR--LNVLP 239
++ Q+ + ++V++++ P AE++ A + N +I N ++ R + ++
Sbjct: 246 EIESGQTHD--KIVVTEI-PYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIVI 302
Query: 240 IVSTDALGNII--KLNTVNAL 258
+ DA +++ KL + AL
Sbjct: 303 DIKRDANASVVLNKLYKMTAL 323
>gi|424663630|ref|ZP_18100667.1| DNA gyrase, A subunit [Bacteroides fragilis HMW 616]
gi|404577320|gb|EKA82058.1| DNA gyrase, A subunit [Bacteroides fragilis HMW 616]
Length = 845
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 128 LNEMSQWCHSYLDNTDLTDEEACSPVKHPVF------YSVCQALFSVITYKHSILVDSKK 181
L+E+ C +YLDN D+T EE VK P F Y + + +T + +++ +K
Sbjct: 186 LSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMRAKA 245
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR--LNVLP 239
++ Q+ + ++V++++ P AE++ A + N +I N ++ R + ++
Sbjct: 246 EIESGQTHD--KIVVTEI-PYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIVI 302
Query: 240 IVSTDALGNII--KLNTVNAL 258
+ DA +++ KL + AL
Sbjct: 303 DIKRDANASVVLNKLYKMTAL 323
>gi|423277496|ref|ZP_17256410.1| DNA gyrase, A subunit [Bacteroides fragilis HMW 610]
gi|404587245|gb|EKA91795.1| DNA gyrase, A subunit [Bacteroides fragilis HMW 610]
Length = 845
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 128 LNEMSQWCHSYLDNTDLTDEEACSPVKHPVF------YSVCQALFSVITYKHSILVDSKK 181
L+E+ C +YLDN D+T EE VK P F Y + + +T + +++ +K
Sbjct: 186 LSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMRAKA 245
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR--LNVLP 239
++ Q+ + ++V++++ P AE++ A + N +I N ++ R + ++
Sbjct: 246 EIESGQTHD--KIVVTEI-PYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIVI 302
Query: 240 IVSTDALGNII--KLNTVNAL 258
+ DA +++ KL + AL
Sbjct: 303 DIKRDANASVVLNKLYKMTAL 323
>gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 845
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 128 LNEMSQWCHSYLDNTDLTDEEACSPVKHPVF------YSVCQALFSVITYKHSILVDSKK 181
L+E+ C +YLDN D+T EE VK P F Y + + +T + +++ +K
Sbjct: 186 LSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMRAKA 245
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR--LNVLP 239
++ Q+ + ++V++++ P AE++ A + N +I N ++ R + ++
Sbjct: 246 EIESGQTHD--KIVVTEI-PYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIVI 302
Query: 240 IVSTDALGNII--KLNTVNAL 258
+ DA +++ KL + AL
Sbjct: 303 DIKRDANASVVLNKLYKMTAL 323
>gi|53713702|ref|YP_099694.1| DNA gyrase subunit A [Bacteroides fragilis YCH46]
gi|60681973|ref|YP_212117.1| DNA gyrase subunit A [Bacteroides fragilis NCTC 9343]
gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
gi|336410062|ref|ZP_08590544.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_56FAA]
gi|375358730|ref|YP_005111502.1| DNA gyrase subunit A [Bacteroides fragilis 638R]
gi|383118625|ref|ZP_09939366.1| DNA gyrase, A subunit [Bacteroides sp. 3_2_5]
gi|423250262|ref|ZP_17231278.1| DNA gyrase, A subunit [Bacteroides fragilis CL03T00C08]
gi|423255765|ref|ZP_17236694.1| DNA gyrase, A subunit [Bacteroides fragilis CL03T12C07]
gi|423257136|ref|ZP_17238059.1| DNA gyrase, A subunit [Bacteroides fragilis CL07T00C01]
gi|423265893|ref|ZP_17244896.1| DNA gyrase, A subunit [Bacteroides fragilis CL07T12C05]
gi|423271606|ref|ZP_17250576.1| DNA gyrase, A subunit [Bacteroides fragilis CL05T00C42]
gi|423275490|ref|ZP_17254434.1| DNA gyrase, A subunit [Bacteroides fragilis CL05T12C13]
gi|423284251|ref|ZP_17263135.1| DNA gyrase, A subunit [Bacteroides fragilis HMW 615]
gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
gi|251945929|gb|EES86336.1| DNA gyrase, A subunit [Bacteroides sp. 3_2_5]
gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R]
gi|335946443|gb|EGN08249.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_56FAA]
gi|387778612|gb|EIK40707.1| DNA gyrase, A subunit [Bacteroides fragilis CL07T00C01]
gi|392649847|gb|EIY43519.1| DNA gyrase, A subunit [Bacteroides fragilis CL03T12C07]
gi|392653648|gb|EIY47303.1| DNA gyrase, A subunit [Bacteroides fragilis CL03T00C08]
gi|392697302|gb|EIY90488.1| DNA gyrase, A subunit [Bacteroides fragilis CL05T00C42]
gi|392701938|gb|EIY95088.1| DNA gyrase, A subunit [Bacteroides fragilis CL05T12C13]
gi|392703551|gb|EIY96695.1| DNA gyrase, A subunit [Bacteroides fragilis CL07T12C05]
gi|404580244|gb|EKA84955.1| DNA gyrase, A subunit [Bacteroides fragilis HMW 615]
Length = 845
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 128 LNEMSQWCHSYLDNTDLTDEEACSPVKHPVF------YSVCQALFSVITYKHSILVDSKK 181
L+E+ C +YLDN D+T EE VK P F Y + + +T + +++ +K
Sbjct: 186 LSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMRAKA 245
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR--LNVLP 239
++ Q+ + ++V++++ P AE++ A + N +I N ++ R + ++
Sbjct: 246 EIESGQTHD--KIVVTEI-PYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIVI 302
Query: 240 IVSTDALGNII--KLNTVNAL 258
+ DA +++ KL + AL
Sbjct: 303 DIKRDANASVVLNKLYKMTAL 323
>gi|378727612|gb|EHY54071.1| hypothetical protein HMPREF1120_02248 [Exophiala dermatitidis
NIH/UT8656]
Length = 691
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 66/253 (26%)
Query: 4 NELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCC 63
+L++ F + ILPT+ H FLVF+F I + F+ + + + ++ R S
Sbjct: 386 EQLISQFHTHILPTYRARHPQFLVFHFAQSDPIIVDRFVTSCVAVLVDKRQPHLLRHSAA 445
Query: 64 HYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRV 123
Y S +G AH P +V
Sbjct: 446 AYFSGF----------VGRG--------------------------------AHVSP-QV 462
Query: 124 IKTCLNEMSQWCHSYLDNTDLTDEEACSP---VKHPVFYSVCQALFSVITYKHSILVDSK 180
++ CLN + C +L + E C ++ FY+ QA+ + ++ + +
Sbjct: 463 VQDCLNLL---C-DHLTILRKSYEPGCRGPDIKRYGDFYAAFQAILYIFCFRWRDIASAS 518
Query: 181 --------------KNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVY 224
+ F ++L L + S LNPLR C IV FA +T+ Q+ Y
Sbjct: 519 SDDDSDFDVDEDEVETYHFSETLREALRAAIYSPLNPLRVCTPVIVDQFAKLTHALQLFY 578
Query: 225 CYNVIHQNARLNV 237
Y + +N + V
Sbjct: 579 VYPKLEENRHVRV 591
>gi|393788199|ref|ZP_10376330.1| DNA gyrase, A subunit [Bacteroides nordii CL02T12C05]
gi|392656412|gb|EIY50051.1| DNA gyrase, A subunit [Bacteroides nordii CL02T12C05]
Length = 858
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Query: 128 LNEMSQWCHSYLDNTDLTDEEACSPVKHPVF------YSVCQALFSVITYKHSILVDSKK 181
L+E+ C +YLDN ++T EE + VK P F Y V + +T + +++ +K
Sbjct: 186 LSEVIDACDAYLDNPEITVEELMNYVKAPDFPTGGYIYGVTGVREAYLTGRGRVVMRAKA 245
Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR--LNVLP 239
++ Q+ + ++V++++ P AE++ + A + N +I N ++ R + ++
Sbjct: 246 EIETGQTHD--KIVVTEI-PYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIVI 302
Query: 240 IVSTDALGNII--KLNTVNAL 258
+ DA +++ KL + AL
Sbjct: 303 DIKRDANASVVLNKLYKMTAL 323
>gi|429329357|gb|AFZ81116.1| hypothetical protein BEWA_005240 [Babesia equi]
Length = 952
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 5 ELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCH 64
EL+ FE ILPT+ +V FL F+ S + F+E L+ + + + + R++
Sbjct: 457 ELIDTFEDIILPTYNCKYVQFLYFFIFSFNAQWFKTFLERLFTIVFDNNQHVVKRRTAAS 516
Query: 65 YVSSLLIHAHFM 76
Y+SSL+ + ++
Sbjct: 517 YISSLICRSKYV 528
>gi|302411166|ref|XP_003003416.1| RNA polymerase I-specific transcription initiation factor rrn3
[Verticillium albo-atrum VaMs.102]
gi|261357321|gb|EEY19749.1| RNA polymerase I-specific transcription initiation factor rrn3
[Verticillium albo-atrum VaMs.102]
Length = 743
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 60/234 (25%)
Query: 6 LLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHY 65
L+ F +LPT+ H FL+F+F L + + F+ L +IF +
Sbjct: 501 LVQSFGKFVLPTYKSRHTQFLLFHFGQLSERLRDTFVGSL---------MHIFTE----- 546
Query: 66 VSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIK 125
+N F+ RQ+ Y++ + +P +++
Sbjct: 547 ----------------QNRPAFV-------------RQAAATYLAGFVARGAHVPGDLVR 577
Query: 126 TCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS------ 179
T N + SY D +H ++YS+ QA+ V ++ LV S
Sbjct: 578 TIFNLLLARMKSYRLRHD-AQSRGPDMKRHQIYYSMAQAILYVYCFRWKDLVVSVPEHVD 636
Query: 180 --------KKNMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIV 223
++++ L L V ++NPL+ C+ IV FA++ + ++
Sbjct: 637 PEDASSYLGHELEWIHGLKEELASHVYCRMNPLKICSPAIVDEFATLAHKLGLI 690
>gi|3132470|gb|AAC16259.1| unknown protein [Arabidopsis thaliana]
Length = 602
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 25/159 (15%)
Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK 180
+R+I C+ +C + D+T P H +F+S CQA+ V+ ++ ++D
Sbjct: 389 LRLIDECVG----YCRTCNDDT--------RPEAHQIFFSGCQAIMYVLCFRMRSILDVP 436
Query: 181 KNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
+F L L ++M +LNPL C +V+ F + + + ++L
Sbjct: 437 ---RFRSQLTPLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLFIVSDSFIFD---DLLE 490
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ A G +L+T + PF LL S I+P
Sbjct: 491 SELSRAFGGFERLDT------FFPFDPCLLKSSNSFISP 523
>gi|156084746|ref|XP_001609856.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797108|gb|EDO06288.1| hypothetical protein BBOV_II003330 [Babesia bovis]
Length = 988
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 95/219 (43%), Gaps = 23/219 (10%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
+ +ELL VFE +LPT +V FL + S++ + F++ L + + + ++ R+
Sbjct: 447 IVSELLDVFEDVVLPTQRCKYVQFLYIHVASMKTAWSHLFLQRLLLILYDEEAHSTSRRY 506
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
Y++S++ A F+ + + + +L+ +A K + Q C + + + F +
Sbjct: 507 ASSYIASIVSRADFIQGQVVCSVVYYLFSILA--KFEYLLVQ--CQDSGASSVTSDFT-L 561
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
R S HS ++ FYS+ Q + +++Y L S +
Sbjct: 562 RSQNRFGESGSIRSHSQMNR----------------FYSLLQDILHIVSYHAGTLGSSPR 605
Query: 182 NMKFLQSLNLT--RLVMSQLNPLRSCNAEIVSHFASITN 218
+++LQ L+ + S L P+ +V + S T+
Sbjct: 606 CVRYLQDKRLSVCTFLDSHLFPVGRMRETVVDNAISATS 644
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,628,555,773
Number of Sequences: 23463169
Number of extensions: 177539000
Number of successful extensions: 457564
Number of sequences better than 100.0: 383
Number of HSP's better than 100.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 456503
Number of HSP's gapped (non-prelim): 817
length of query: 323
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 181
effective length of database: 9,027,425,369
effective search space: 1633963991789
effective search space used: 1633963991789
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 77 (34.3 bits)