BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13564
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2RS91|RRN3_MOUSE RNA polymerase I-specific transcription initiation factor RRN3
OS=Mus musculus GN=Rrn3 PE=1 SV=1
Length = 656
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 158/317 (49%), Gaps = 55/317 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+++F+ +LPTH HV F +F+ CS +L E
Sbjct: 341 LYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGFAEA--------------------- 379
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 380 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 417
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+KTCL+ + W H YL N D + C H FYS CQA+F + ++H L+
Sbjct: 418 ITVKTCLDLLVNWLHMYLTNQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNL 477
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+V+SQLNPL+ C ++V+ FA+ITN YQ+V+CY ++ +N+R +LP
Sbjct: 478 KQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFFAAITNKYQLVFCYTIMERNSR-QMLP 536
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I DPI + L
Sbjct: 537 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFI--------DPIYQIWEDGSAEEL 587
Query: 300 LIADPVSSKQADHDEDD 316
+ K+ DEDD
Sbjct: 588 QEFKKSTKKEVVEDEDD 604
>sp|Q9NYV6|RRN3_HUMAN RNA polymerase I-specific transcription initiation factor RRN3
OS=Homo sapiens GN=RRN3 PE=1 SV=1
Length = 651
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 157/319 (49%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E
Sbjct: 343 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 419
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 480 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 539 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 592
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 593 --KKPMKKDIVEDEDDDFL 609
>sp|Q5R4N9|RRN3_PONAB RNA polymerase I-specific transcription initiation factor RRN3
OS=Pongo abelii GN=RRN3 PE=2 SV=1
Length = 650
Score = 171 bits (433), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 155/319 (48%), Gaps = 54/319 (16%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +L TH HV F +FY CS +L E
Sbjct: 342 LYRDLINIFDKLLLSTHASCHVQFFMFYLCSFKLGFAEA--------------------- 380
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 381 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 418
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
+++CL+ + W H YL+N D + C H FYS CQA+F ++H L+
Sbjct: 419 ITVRSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 478
Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
K+ +++LQSLN +VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP
Sbjct: 479 KEGLRYLQSLNFEWIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 537
Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
++ + A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 538 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 591
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ + + ++DDFL
Sbjct: 592 --KKPMRKEIVEDEDDDFL 608
>sp|Q2M238|RN3P1_HUMAN Putative RRN3-like protein RRN3P1 OS=Homo sapiens GN=RRN3P1 PE=5
SV=1
Length = 152
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 2/151 (1%)
Query: 78 VSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHS 137
+ E F+E LWK + + I RQ+ +Y+ S L A F+ + +K CL+ + W H
Sbjct: 1 MGFAEAFLEHLWKNLQDPSNPAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHI 60
Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
YL+N D + C H FYS CQA+F ++H L+ K+ +++ QSLN R+V
Sbjct: 61 YLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYPQSLNFERIV 120
Query: 196 MSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
MSQLNPL+ C +V+ FA+IT Y +
Sbjct: 121 MSQLNPLKICLPSVVNFFAAITKMKTCGYGW 151
>sp|Q10110|RRN3_SCHPO RNA polymerase I-specific transcription initiation factor rrn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rrn3 PE=3 SV=1
Length = 599
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 27/226 (11%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
C Y L+ A + + F+ L + + R S Y+ S + A +
Sbjct: 357 CRYTQFLIFWASQLDPEFTDIFLGVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKN 416
Query: 123 VIKTCLNEMSQWCHSYLDN--TDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL--VD 178
I+ +N M++W +YLD +L+D+ KH VFY++ Q++F + ++ L D
Sbjct: 417 TIQIIVNMMTRWVEAYLDQCENELSDDLLS---KHSVFYAINQSIFYIFCFRWRELCVSD 473
Query: 179 SKKNMK-----FLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQN 232
++M+ ++ L L R V+S+LNPLR C+ IV FA + N +Y Y++I QN
Sbjct: 474 ESESMEPRPNEWIPGLEILHRSVLSRLNPLRYCSPNIVLQFAKVANHLNFMYVYSIIEQN 533
Query: 233 ARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+ I + + +D Y PF + L + I+ P
Sbjct: 534 RK-------------GIFR-EGFDTMDAYFPFDPYRLTKSSIIVQP 565
>sp|P48322|YPJ1_CAEEL Uncharacterized protein C36E8.1 OS=Caenorhabditis elegans
GN=C36E8.1 PE=3 SV=1
Length = 654
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 41/229 (17%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF+ L EST+L + +V F+ YFCSL + +E LW+
Sbjct: 352 LFDTFLECLESTMLNATHVQYVSFIWLYFCSLSQEYEKKMLEHLWQ-------------- 397
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
+ I P ++ Q Y+++ L A ++
Sbjct: 398 -------VTIRMPRAPADARKS-------------------QGAASYLAAFLARAKYVKK 431
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV-KHPVFYSVCQALFSVITYKHSILVDSK 180
T L E+ W Y+D + + +H FYSV QA F V +++ V +K
Sbjct: 432 STAFTWLEEVYIWLRHYVDQFGSGSSQILPGLQRHGTFYSVSQAFFLVFAFRYKEFVKNK 491
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
++ ++ + R+V S L PL+ + + F++IT + Q+VYC ++I
Sbjct: 492 DMLETIRRWGVGRVVHSPLEPLKYVSKPVARCFSAITRSLQLVYCNHII 540
>sp|P36070|RRN3_YEAST RNA polymerase I-specific transcription initiation factor RRN3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RRN3 PE=1 SV=1
Length = 627
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
+FN L +F++ +LPT+ + +++F+ +L + ++F I F + A KI
Sbjct: 360 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 419
Query: 56 NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
++ Y+ S + A KK++ +I +V+S L
Sbjct: 420 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 446
Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
+ W + Y+ + ++ + FY+ QAL + ++H+I
Sbjct: 447 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 490
Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
D+ N KF Q R+V+S+ NPL+ CN ++ FA I + YC+++I
Sbjct: 491 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 545
Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
+ N RL ++ +D N + NT ++
Sbjct: 546 NNNNERLRGIIGKADSDKKENSAQANTTSS 575
>sp|A6NIE6|RN3P2_HUMAN Putative RRN3-like protein RRN3P2 OS=Homo sapiens GN=RRN3P2 PE=5
SV=3
Length = 340
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 29 YFCSLRLSIGENFIEFLWKKIANVKIYNI------FRQSCCHYVSSLLIHAHFMPVSIGE 82
YF +LR I E IE L K N I Q+C S+ + E
Sbjct: 211 YFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETANQTCGGTDST----EGLCNMGFAE 266
Query: 83 NFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRV 123
F+E LWKK+ + I RQ+ +Y+ S L A F+P+ +
Sbjct: 267 AFLEPLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLMI 307
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 35 LSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGE 82
+ E F+E LWKK+ + I RQ+ +Y+ S L A F+P+ I E
Sbjct: 262 MGFAEAFLEPLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLMIRE 309
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 177 VDSKKNMKFLQSLNLTRLVM--SQLNPLRSCNAEIVSHFASITNTYQIVYCYN 227
VD ++N++F++ +N + +++ + NP+ + ++S++AS T V+ +N
Sbjct: 408 VDFQENLEFIEQINASNIILVHGEPNPMGRLKSALLSNYASFKGTEDEVHVHN 460
>sp|E9Q355|CTSG1_MOUSE Cation channel sperm-associated protein subunit gamma 1 OS=Mus
musculus GN=Catsperg1 PE=2 SV=1
Length = 1151
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 193 RLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+L Q +PL S N +VS F N +Q+VY ++V + +LP+
Sbjct: 558 KLQKMQKSPLYSTNESLVSLFYQDENLFQLVYLFDVGKERLVKRLLPV 605
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 177 VDSKKNMKFLQSLNLTRLVM--SQLNPLRSCNAEIVSHFASITNTYQIVYCYN 227
VD ++N++F++ ++ +++ + NP+ + ++S+FAS+ T V+ +N
Sbjct: 409 VDFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFN 461
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,708,841
Number of Sequences: 539616
Number of extensions: 4214114
Number of successful extensions: 11157
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11127
Number of HSP's gapped (non-prelim): 31
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)