Query psy13564
Match_columns 323
No_of_seqs 114 out of 222
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:27:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tj1_A RNA polymerase I-specif 100.0 2.3E-81 8E-86 646.3 12.3 242 2-289 382-641 (649)
2 1ibr_B P95, importin beta-1 su 25.8 96 0.0033 28.2 5.7 52 82-133 34-97 (462)
3 3e9v_A Protein BTG2; B-cell tr 18.0 2E+02 0.0069 23.3 5.4 39 103-141 7-45 (120)
4 2kmw_A Uncharacterized protein 15.3 1.3E+02 0.0043 25.1 3.6 33 274-308 97-129 (150)
5 2z15_A Protein TOB1; human TOB 14.1 1.9E+02 0.0066 23.8 4.4 37 103-141 13-49 (130)
6 1zzp_A P150, C-ABL, proto-onco 13.4 4.1E+02 0.014 21.8 6.0 43 102-144 30-74 (130)
7 2qk2_A LP04448P; mini spindles 11.4 4.8E+02 0.016 21.7 6.4 32 83-116 133-164 (242)
8 3fga_B Serine/threonine-protei 11.0 1.3E+02 0.0046 29.3 2.9 39 9-47 213-258 (403)
9 2oxo_A Integrase; DNA-binding 9.9 4.4E+02 0.015 17.8 5.1 38 96-136 42-82 (103)
10 2bpt_A Importin beta-1 subunit 9.8 3E+02 0.01 27.4 5.0 53 82-134 38-103 (861)
No 1
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-81 Score=646.35 Aligned_cols=242 Identities=20% Similarity=0.353 Sum_probs=214.1
Q ss_pred hHHHHHHHHhhcccCCCCccccchhhhhhhccChhhHhHHHHHHHHHHhcccccccccccccccccchhhhcccCccccc
Q psy13564 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIG 81 (323)
Q Consensus 2 lf~~Ll~~F~~~ILpT~~sk~vQFL~Fy~cs~~~~~~e~Fl~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (323)
+|++|+.+|+++|||||+|||||||+||+||++|+++++|+++||+++++|++
T Consensus 382 lf~~Ll~~F~~~ILpT~~sr~vQFl~Fy~cs~~~~~~~~Fl~~L~~~~~~~~~--------------------------- 434 (649)
T 3tj1_A 382 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNE--------------------------- 434 (649)
T ss_dssp HHHHHHHHHHHTTTTSCSCSSTTHHHHHHHTTSHHHHHHHHHHHHHHHHCSSS---------------------------
T ss_pred HHHHHHHHHHHhccccccCccHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCC---------------------------
Confidence 79999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhccchhhHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHH
Q psy13564 82 ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSV 161 (323)
Q Consensus 82 ~~~~~~l~kk~~~~~~~~~~RqaAaaYlaSflaRA~fv~~~~v~~~l~~L~~w~~~Yi~~~~~~s~~~~d~~~h~vFYsv 161 (323)
|+++||+||+|||||||||||||.++|+.++++|++||+.|+++++..++++.+.++|++|||+
T Consensus 435 ----------------~~~~RqaAaaYLaSflARAk~v~~~~v~~vl~~L~~wl~~Yi~~~~~~~~~~~~~~~~~~FYs~ 498 (649)
T 3tj1_A 435 ----------------AAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 498 (649)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHBTTCCHHHHHHHHHHHHHHHHHHHHHHGGGTTSSSCGGGGHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccccCCccHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999988776666788999999999
Q ss_pred HHHHHHHHhhcchhhhccccchhhhhcc--cchhhhhcCCCccccccHHHHHHHHHhhhhcccchhhhhHhhcccccccc
Q psy13564 162 CQALFSVITYKHSILVDSKKNMKFLQSL--NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239 (323)
Q Consensus 162 cQAlfYIfCFR~~~L~~~~~~~~~l~~l--~l~rii~s~LnPLk~C~psVV~~Fa~ia~~~~l~yc~~iie~N~r~~~lp 239 (323)
|||+||||||||++|++.+. .|...+ +|+|+|+|+|||||+|+|+||.+||+||+++|++|||+|||+||| .+++
T Consensus 499 cQA~fYIfCFR~rdL~~~~~--~w~~~l~~~l~riv~s~LNPLk~C~p~VV~eFA~ia~~~~l~YCy~iiE~NkR-~rl~ 575 (649)
T 3tj1_A 499 FQALCYIFCFRHNIFRDTDG--NWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNN-ERLR 575 (649)
T ss_dssp HHHHHHHHHHHGGGGBCTTS--CBGGGHHHHHHHHHHSTTCHHHHSCHHHHHHHHHHHHHTTSCCCHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhcccc--chhhhHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHHHcCeEeehHhhhcccc-cccc
Confidence 99999999999999998643 444443 699999999999999999999999999999999999999999999 6666
Q ss_pred ccccccc---cc--------cc-----cccccccCCccCCCCCCCcccccccccccceeccCCCCC
Q psy13564 240 IVSTDAL---GN--------II-----KLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPV 289 (323)
Q Consensus 240 ~~~s~~~---g~--------~~-----~~~~~~~Ld~fFPFDPYlL~~S~~~I~p~Y~~W~~~~~~ 289 (323)
+..+.+. |+ +. +....++||+|||||||.||||++||+|+|++|++++|.
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ld~fFPFDPy~L~~Sk~~i~~~Y~~W~~v~~~ 641 (649)
T 3tj1_A 576 GIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYDPLFLKNYKILMKEYYIEWSEASGE 641 (649)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHCCTTSCCCSHHHHHHHGGGBCCHHHHC--
T ss_pred cccccccCCcccccccccccccccccccccccCcCcCCCCCCCcccccchhhhchhceeccCCCCc
Confidence 5543321 11 00 011236899999999999999999999999999999973
No 2
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=25.77 E-value=96 Score=28.18 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=36.6
Q ss_pred hhHHHHHHHHhhhccchhhHHHHHHHHHHHHHhhh------------ccCChHhHHHHHHHHHH
Q psy13564 82 ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHA------------HFMPVRVIKTCLNEMSQ 133 (323)
Q Consensus 82 ~~~~~~l~kk~~~~~~~~~~RqaAaaYlaSflaRA------------~fv~~~~v~~~l~~L~~ 133 (323)
+.|+..|..-+.+.+.+..+|++|+-+|..++.+- .-++.+....+-..|+.
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~ 97 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQ 97 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 34677777778887778899999999999998552 34666654444444443
No 3
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=18.01 E-value=2e+02 Score=23.33 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhhccCChHhHHHHHHHHHHHHHHHhhc
Q psy13564 103 QSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDN 141 (323)
Q Consensus 103 qaAaaYlaSflaRA~fv~~~~v~~~l~~L~~w~~~Yi~~ 141 (323)
++|+.+|+++|-+..-+|.+.+..--+.|.+-+..-.+.
T Consensus 7 ~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~ 45 (120)
T 3e9v_A 7 AAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKH 45 (120)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999998777899999988888888777555443
No 4
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=15.29 E-value=1.3e+02 Score=25.07 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=16.6
Q ss_pred ccccccceeccCCCCCCCCchhhhcccccCCCCCC
Q psy13564 274 SIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSK 308 (323)
Q Consensus 274 ~~I~p~Y~~W~~~~~~d~~d~~~~~~~~~~~~~~~ 308 (323)
.|+...+..|.+....++.+++.+ ...+.+..+
T Consensus 97 ~~lk~Dwdkw~dedeeee~~~~~~--~~~~~~~~d 129 (150)
T 2kmw_A 97 PYIKVDWNKWCDEDEEVNSETASD--DESAFVNQD 129 (150)
T ss_dssp TTEEECSSSSCCSSCCCCSSCCCC--CCCCCCCCC
T ss_pred ccccccchhcCCchhcccccccCc--ccccccccc
Confidence 366777888876553333333333 344444433
No 5
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=14.10 E-value=1.9e+02 Score=23.76 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhhccCChHhHHHHHHHHHHHHHHHhhc
Q psy13564 103 QSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDN 141 (323)
Q Consensus 103 qaAaaYlaSflaRA~fv~~~~v~~~l~~L~~w~~~Yi~~ 141 (323)
++|+.+|++|| +.+ +|...+..--+.|.+-+..-.+.
T Consensus 13 ~~av~Fl~~~L-~~k-lp~~~v~~F~~~L~~~L~~~y~~ 49 (130)
T 2z15_A 13 QVALNFIISYL-YNK-LPRRRVNIFGEELERLLKKKYEG 49 (130)
T ss_dssp HHHHHHHHTTT-TTT-SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-Hhh-CCHHHHHHHHHHHHHHHHHHhcC
Confidence 48899999999 444 89988888888877766554443
No 6
>1zzp_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; four helix bundle, nuclear export signal, transferase; NMR {Homo sapiens}
Probab=13.36 E-value=4.1e+02 Score=21.83 Aligned_cols=43 Identities=9% Similarity=0.160 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhh-hcc-CChHhHHHHHHHHHHHHHHHhhccCC
Q psy13564 102 RQSCCHYVSSLLIH-AHF-MPVRVIKTCLNEMSQWCHSYLDNTDL 144 (323)
Q Consensus 102 RqaAaaYlaSflaR-A~f-v~~~~v~~~l~~L~~w~~~Yi~~~~~ 144 (323)
=+.++.-+.+.++| +.. -+.+.+...-+.|++||..|++.-..
T Consensus 30 ~le~te~l~~a~a~~s~~~~~~s~~ld~g~~L~~yC~~yvd~i~Q 74 (130)
T 1zzp_A 30 VLDSTEALCLAISRNSEQMASHSAVLEAGKNLYSFCVSYVDSIQQ 74 (130)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHhhhHHHHhhccCCCCchHHHHhHHHHHHhccccccchHH
Confidence 34566777888877 333 56789999999999999999986443
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=11.40 E-value=4.8e+02 Score=21.74 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=18.1
Q ss_pred hHHHHHHHHhhhccchhhHHHHHHHHHHHHHhhh
Q psy13564 83 NFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHA 116 (323)
Q Consensus 83 ~~~~~l~kk~~~~~~~~~~RqaAaaYlaSflaRA 116 (323)
.+++.+.+.+.+. .+-+|+.++..|+..++++
T Consensus 133 ~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 133 AQQESIVESLSNK--NPSVKSETALFIARALTRT 164 (242)
T ss_dssp HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHc
Confidence 3455555555433 2356666666666666664
No 8
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=11.02 E-value=1.3e+02 Score=29.26 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=31.1
Q ss_pred HHhhcccCCCCccccc-------hhhhhhhccChhhHhHHHHHHHH
Q psy13564 9 VFESTILPTHGITHVP-------FLVFYFCSLRLSIGENFIEFLWK 47 (323)
Q Consensus 9 ~F~~~ILpT~~sk~vQ-------FL~Fy~cs~~~~~~e~Fl~~L~~ 47 (323)
-+.+.+||-|+++++. |.+.-++..+|.+++..+..|++
T Consensus 213 fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk 258 (403)
T 3fga_B 213 FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLK 258 (403)
T ss_dssp HHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3578999999999874 34556789999999988888864
No 9
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=9.91 E-value=4.4e+02 Score=17.82 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=21.9
Q ss_pred cchhhHHHHHHHHHHHHHhhhccCChHhHH---HHHHHHHHHHH
Q psy13564 96 KIYNIFRQSCCHYVSSLLIHAHFMPVRVIK---TCLNEMSQWCH 136 (323)
Q Consensus 96 ~~~~~~RqaAaaYlaSflaRA~fv~~~~v~---~~l~~L~~w~~ 136 (323)
....+++.-...|+..+..+. .+.++. .+|..+++|+.
T Consensus 42 ~l~~it~~~i~~~~~~l~~~~---~~~t~~~~~~~l~~~~~~a~ 82 (103)
T 2oxo_A 42 PLEDITTKEIAAMLNGYIDEG---KAASAKLIRSTLSDAFREAI 82 (103)
T ss_dssp BGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777766554 344444 44455555554
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=9.81 E-value=3e+02 Score=27.37 Aligned_cols=53 Identities=6% Similarity=-0.123 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhhccchhhHHHHHHHHHHHHHhhh------------c-cCChHhHHHHHHHHHHH
Q psy13564 82 ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHA------------H-FMPVRVIKTCLNEMSQW 134 (323)
Q Consensus 82 ~~~~~~l~kk~~~~~~~~~~RqaAaaYlaSflaRA------------~-fv~~~~v~~~l~~L~~w 134 (323)
+.|+..|..-+.+...+..+|+.|+-+|-..+-+- . .++.+....+-..|++.
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~ 103 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTA 103 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHH
Confidence 45777788888877678889999999999987431 2 26666555555555543
Done!