Your job contains 1 sequence.
>psy13564
VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ
SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP
VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSK
KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI
VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL
IADPVSSKQADHDEDDFLMSVDS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13564
(323 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NIF7 - symbol:RRN3 "Uncharacterized protein" ... 429 3.1e-40 1
UNIPROTKB|I3LD85 - symbol:RRN3 "Uncharacterized protein" ... 427 4.2e-40 1
UNIPROTKB|E1B883 - symbol:RRN3 "Uncharacterized protein" ... 429 7.0e-40 1
MGI|MGI:1925255 - symbol:Rrn3 "RRN3 RNA polymerase I tran... 427 9.6e-40 1
UNIPROTKB|B4E0J7 - symbol:RRN3 "cDNA FLJ52380, highly sim... 423 1.1e-39 1
UNIPROTKB|B4E3T2 - symbol:RRN3 "cDNA FLJ53965, highly sim... 423 1.5e-39 1
UNIPROTKB|F5H148 - symbol:RRN3 "RNA polymerase I-specific... 423 1.6e-39 1
UNIPROTKB|Q9NYV6 - symbol:RRN3 "RNA polymerase I-specific... 423 2.6e-39 1
RGD|1305001 - symbol:Rrn3 "RRN3 RNA polymerase I transcri... 416 1.8e-38 1
ZFIN|ZDB-GENE-080225-1 - symbol:rrn3 "RRN3 RNA polymerase... 404 2.2e-37 1
FB|FBgn0032988 - symbol:Tif-IA "Tif-IA" species:7227 "Dro... 364 6.9e-33 1
POMBASE|SPAC18G6.11c - symbol:rrn3 "ribosomal DNA (rDNA) ... 192 2.1e-12 1
CGD|CAL0002535 - symbol:RRN3 species:5476 "Candida albica... 169 8.3e-10 1
SGD|S000001608 - symbol:RRN3 "Protein required for transc... 149 8.9e-10 2
WB|WBGene00007980 - symbol:C36E8.1 species:6239 "Caenorha... 161 8.7e-09 1
TAIR|locus:2061574 - symbol:AT2G34750 species:3702 "Arabi... 142 1.1e-06 1
TAIR|locus:2204609 - symbol:AT1G30590 species:3702 "Arabi... 138 3.0e-06 1
TAIR|locus:2056063 - symbol:AT2G39240 species:3702 "Arabi... 129 2.8e-05 1
>UNIPROTKB|F1NIF7 [details] [associations]
symbol:RRN3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=IEA]
[GO:0007000 "nucleolus organization" evidence=IEA] [GO:0007028
"cytoplasm organization" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0048872
"homeostasis of number of cells" evidence=IEA] [GO:0070063 "RNA
polymerase binding" evidence=IEA] [GO:2000142 "regulation of
DNA-dependent transcription, initiation" evidence=IEA] Pfam:PF05327
GO:GO:0045893 GO:GO:0043066 GO:GO:0008283 GO:GO:0042254
GO:GO:0048872 GO:GO:0006361 GO:GO:0007000 GO:GO:0007028
GO:GO:2000142 OMA:STPWFLM InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:AADN02023930 EMBL:AADN02023931
IPI:IPI01017278 Ensembl:ENSGALT00000034401 Uniprot:F1NIF7
Length = 622
Score = 429 (156.1 bits), Expect = 3.1e-40, P = 3.1e-40
Identities = 89/258 (34%), Positives = 139/258 (53%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
CH V + H + + E F++ LWKK+ + ++ RQ+ Y+ S L A F+PV
Sbjct: 330 CH-VQYFIFHICSLKSGLAEAFLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPVV 388
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
+K CL+ + W H Y+DN D C H FYS CQA F + ++H L+D +
Sbjct: 389 TVKACLDLLVNWMHKYIDNQDTGANAYCDVALHGPFYSACQAAFYTLIFRHKQLLDGNLR 448
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
K + +LQSLN R+VM QLNPL+ C +V+ FA+IT YQ+V+CY +I +N R +P+
Sbjct: 449 KGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNR-QFIPV 507
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
V + G+ +++ T N LD + PF ++L R K I P + + +NL
Sbjct: 508 VRSGTGGDFVQMCT-NPLDSFFPFDPYVLKRSKKTIDPFYQFWEE-----LSAEDLENL- 560
Query: 301 IADPVSSKQADHDEDDFL 318
P+ ++ ++DDFL
Sbjct: 561 -KKPIKKGTSEDEDDDFL 577
Score = 175 (66.7 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 30/77 (38%), Positives = 49/77 (63%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L++VF+ ILPTH HV + +F+ CSL+ + E F++ LWKK+ + ++ RQ+
Sbjct: 311 LYRDLVSVFDKLILPTHASCHVQYFIFHICSLKSGLAEAFLDHLWKKLQDPNNPSVIRQT 370
Query: 62 CCHYVSSLLIHAHFMPV 78
Y+ S L A F+PV
Sbjct: 371 AGSYIGSFLARAKFIPV 387
>UNIPROTKB|I3LD85 [details] [associations]
symbol:RRN3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000142 "regulation of DNA-dependent transcription,
initiation" evidence=IEA] [GO:0070063 "RNA polymerase binding"
evidence=IEA] [GO:0048872 "homeostasis of number of cells"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0007028 "cytoplasm organization" evidence=IEA] [GO:0007000
"nucleolus organization" evidence=IEA] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] Pfam:PF05327 GO:GO:0045893
GO:GO:0043066 GO:GO:0008283 GO:GO:0001701 GO:GO:0042254
GO:GO:0048872 GO:GO:0006361 GO:GO:0007000 GO:GO:0007028
GO:GO:2000142 CTD:54700 KO:K15216 InterPro:IPR007991
PANTHER:PTHR12790 GeneTree:ENSGT00390000001488
RefSeq:XP_003362032.1 Ensembl:ENSSSCT00000026383 GeneID:100624003
KEGG:ssc:100624003 OMA:ICTIECY Uniprot:I3LD85
Length = 430
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 93/259 (35%), Positives = 142/259 (54%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
CH V + + + E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 140 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLI 198
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+ K
Sbjct: 199 TVKSCLDLLVNWLHVYLNNQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHRQLLSGNLK 258
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ +++LQSLN R+VMSQLNPL+ C +V+ FA+IT+ YQ+V+CY +I +N L +LP+
Sbjct: 259 EGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTLIERN-NLKMLPV 317
Query: 241 -VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
+ A G+ ++ T N LD + PF +L R K I P D + Q L
Sbjct: 318 XIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPVYQVWED-----LSAEELQEL 371
Query: 300 LIADPVSSKQADHDEDDFL 318
P+ ++A+ +EDDFL
Sbjct: 372 --KKPIKKEEAEDEEDDFL 388
Score = 183 (69.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E F+E LWKK+ + I RQ+
Sbjct: 121 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQA 180
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFL 88
+Y+ S L A F+P+ ++ ++ L
Sbjct: 181 AANYIGSFLARAKFIPLITVKSCLDLL 207
>UNIPROTKB|E1B883 [details] [associations]
symbol:RRN3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000142 "regulation of DNA-dependent transcription,
initiation" evidence=IEA] [GO:0070063 "RNA polymerase binding"
evidence=IEA] [GO:0048872 "homeostasis of number of cells"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0007028 "cytoplasm organization" evidence=IEA] [GO:0007000
"nucleolus organization" evidence=IEA] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] Pfam:PF05327 GO:GO:0045893
GO:GO:0043066 GO:GO:0008283 GO:GO:0001701 GO:GO:0042254
GO:GO:0048872 GO:GO:0006361 GO:GO:0007000 GO:GO:0007028
GO:GO:2000142 OMA:STPWFLM InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:DAAA02057544 IPI:IPI00718637
Ensembl:ENSBTAT00000006308 Uniprot:E1B883
Length = 673
Score = 429 (156.1 bits), Expect = 7.0e-40, P = 7.0e-40
Identities = 92/258 (35%), Positives = 139/258 (53%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
CH V + + + E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 384 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLI 442
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+ K
Sbjct: 443 TVKSCLDLLVNWLHVYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 502
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP+
Sbjct: 503 EGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTLIERNNR-QMLPV 561
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
+ A G+ ++ T N LD + PF +L R K I P D + Q
Sbjct: 562 IRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPLYQIWED-----MSAEELQEF- 614
Query: 301 IADPVSSKQADHDEDDFL 318
P+ + + +EDDFL
Sbjct: 615 -KKPIKKEVVEDEEDDFL 631
Score = 183 (69.5 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E F+E LWKK+ + I RQ+
Sbjct: 365 LYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQA 424
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFL 88
+Y+ S L A F+P+ ++ ++ L
Sbjct: 425 AANYIGSFLARAKFIPLITVKSCLDLL 451
>MGI|MGI:1925255 [details] [associations]
symbol:Rrn3 "RRN3 RNA polymerase I transcription factor
homolog (yeast)" species:10090 "Mus musculus" [GO:0001701 "in utero
embryonic development" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006361 "transcription initiation
from RNA polymerase I promoter" evidence=IMP] [GO:0007000
"nucleolus organization" evidence=IMP] [GO:0007028 "cytoplasm
organization" evidence=IMP] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0042254 "ribosome biogenesis" evidence=IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0048872 "homeostasis of number of
cells" evidence=IMP] [GO:0070063 "RNA polymerase binding"
evidence=IDA] [GO:2000142 "regulation of DNA-dependent
transcription, initiation" evidence=IDA] MGI:MGI:1925255
Pfam:PF05327 GO:GO:0045893 GO:GO:0043066 GO:GO:0005730
GO:GO:0008283 GO:GO:0001701 GO:GO:0042254 GO:GO:0048872
GO:GO:0006361 GO:GO:0007000 GO:GO:0007028 GO:GO:2000142
GO:GO:0070063 CTD:54700 eggNOG:NOG275643 HOGENOM:HOG000236344
KO:K15216 OMA:STPWFLM OrthoDB:EOG4XD3QT InterPro:IPR007991
PANTHER:PTHR12790 EMBL:BC055781 EMBL:BC034110 EMBL:BC138774
EMBL:BC138776 IPI:IPI00127454 RefSeq:NP_001034610.1
UniGene:Mm.490362 ProteinModelPortal:B2RS91 SMR:B2RS91
STRING:B2RS91 PhosphoSite:B2RS91 PaxDb:B2RS91 PRIDE:B2RS91
Ensembl:ENSMUST00000023363 GeneID:106298 KEGG:mmu:106298
UCSC:uc007ygj.1 GeneTree:ENSGT00390000001488 InParanoid:B2RS91
NextBio:358127 Bgee:B2RS91 Genevestigator:B2RS91 Uniprot:B2RS91
Length = 656
Score = 427 (155.4 bits), Expect = 9.6e-40, P = 9.6e-40
Identities = 98/293 (33%), Positives = 156/293 (53%)
Query: 31 CSLRLSIGENFIEFLWKKIANV--KIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFL 88
C + I N + L++ + ++ K+ + + CH + F + E F+E L
Sbjct: 327 CRVHGKIDNNKTKDLYRDLISIFDKLL-LPTHASCHVQFFMFFLCSFK-LGFAEAFLEHL 384
Query: 89 WKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEE 148
WKK+ + I RQ+ +Y+ S L A F+P+ +KTCL+ + W H YL N D +
Sbjct: 385 WKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMYLTNQDSGTKA 444
Query: 149 ACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLVMSQLNPLRSCN 206
C H FYS CQA+F + ++H L+ K+ +++LQSLN R+V+SQLNPL+ C
Sbjct: 445 FCDVALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICL 504
Query: 207 AEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFST 266
++V+ FA+ITN YQ+V+CY ++ +N+R +LP++ + A G+ ++ T N LD + PF
Sbjct: 505 PQVVNFFAAITNKYQLVFCYTIMERNSR-QMLPVIRSTAGGDSVQTCT-NPLDTFFPFDP 562
Query: 267 FLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDD-FL 318
+L R K I DPI + L + K+ DEDD FL
Sbjct: 563 CVLKRSKKFI--------DPIYQIWEDGSAEELQEFKKSTKKEVVEDEDDDFL 607
Score = 179 (68.1 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+++F+ +LPTH HV F +F+ CS +L E F+E LWKK+ + I RQ+
Sbjct: 341 LYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQA 400
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFL 88
+Y+ S L A F+P+ + ++ L
Sbjct: 401 AANYIGSFLARAKFIPLITVKTCLDLL 427
>UNIPROTKB|B4E0J7 [details] [associations]
symbol:RRN3 "cDNA FLJ52380, highly similar to RNA
polymerase I-specific transcriptioninitiation factor RRN3"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] Pfam:PF05327 GO:GO:0005730 GO:GO:0003743
UniGene:Hs.460078 HGNC:HGNC:30346 HOGENOM:HOG000236344
HOVERGEN:HBG056994 InterPro:IPR007991 PANTHER:PTHR12790
EMBL:AC139256 EMBL:AK303405 IPI:IPI00889193 STRING:B4E0J7
Ensembl:ENST00000540462 Uniprot:B4E0J7
Length = 469
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 91/258 (35%), Positives = 140/258 (54%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
CH V + + + E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 180 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI 238
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+ K
Sbjct: 239 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 298
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP+
Sbjct: 299 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPV 357
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
+ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 358 IRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF- 410
Query: 301 IADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 411 -KKPMKKDIVEDEDDDFL 427
Score = 179 (68.1 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E F+E LWKK+ + I RQ+
Sbjct: 161 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQA 220
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFL--WKKI 92
+Y+ S L A F+P+ ++ ++ L W I
Sbjct: 221 AGNYIGSFLARAKFIPLITVKSCLDLLVNWLHI 253
>UNIPROTKB|B4E3T2 [details] [associations]
symbol:RRN3 "cDNA FLJ53965, highly similar to RNA
polymerase I-specific transcription initiation factor RRN3"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0006361 "transcription initiation
from RNA polymerase I promoter" evidence=IEA] [GO:0007000
"nucleolus organization" evidence=IEA] [GO:0007028 "cytoplasm
organization" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0048872 "homeostasis of number of
cells" evidence=IEA] [GO:0070063 "RNA polymerase binding"
evidence=IEA] [GO:2000142 "regulation of DNA-dependent
transcription, initiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] Pfam:PF05327 GO:GO:0045893 GO:GO:0043066
GO:GO:0005730 GO:GO:0008283 GO:GO:0001701 GO:GO:0042254
GO:GO:0003743 GO:GO:0048872 GO:GO:0006361 GO:GO:0007000
GO:GO:0007028 GO:GO:2000142 UniGene:Hs.460078 HGNC:HGNC:30346
HOVERGEN:HBG056994 InterPro:IPR007991 PANTHER:PTHR12790
EMBL:AC139256 EMBL:AK304856 IPI:IPI01009215 STRING:B4E3T2
Ensembl:ENST00000327307 Uniprot:B4E3T2
Length = 618
Score = 423 (154.0 bits), Expect = 1.5e-39, P = 1.5e-39
Identities = 91/258 (35%), Positives = 140/258 (54%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
CH V + + + E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 329 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI 387
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+ K
Sbjct: 388 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 447
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP+
Sbjct: 448 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPV 506
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
+ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 507 IRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF- 559
Query: 301 IADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 560 -KKPMKKDIVEDEDDDFL 576
Score = 179 (68.1 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E F+E LWKK+ + I RQ+
Sbjct: 310 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQA 369
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFL--WKKI 92
+Y+ S L A F+P+ ++ ++ L W I
Sbjct: 370 AGNYIGSFLARAKFIPLITVKSCLDLLVNWLHI 402
>UNIPROTKB|F5H148 [details] [associations]
symbol:RRN3 "RNA polymerase I-specific transcription
initiation factor RRN3" species:9606 "Homo sapiens" [GO:0005730
"nucleolus" evidence=IDA] Pfam:PF05327 GO:GO:0005730
HGNC:HGNC:30346 InterPro:IPR007991 PANTHER:PTHR12790 EMBL:AC139256
IPI:IPI01010341 ProteinModelPortal:F5H148 SMR:F5H148
Ensembl:ENST00000429751 UCSC:uc010uzq.2 ArrayExpress:F5H148
Bgee:F5H148 Uniprot:F5H148
Length = 621
Score = 423 (154.0 bits), Expect = 1.6e-39, P = 1.6e-39
Identities = 91/258 (35%), Positives = 140/258 (54%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
CH V + + + E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 332 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI 390
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+ K
Sbjct: 391 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 450
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP+
Sbjct: 451 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPV 509
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
+ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 510 IRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF- 562
Query: 301 IADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 563 -KKPMKKDIVEDEDDDFL 579
Score = 179 (68.1 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E F+E LWKK+ + I RQ+
Sbjct: 313 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQA 372
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFL--WKKI 92
+Y+ S L A F+P+ ++ ++ L W I
Sbjct: 373 AGNYIGSFLARAKFIPLITVKSCLDLLVNWLHI 405
>UNIPROTKB|Q9NYV6 [details] [associations]
symbol:RRN3 "RNA polymerase I-specific transcription
initiation factor RRN3" species:9606 "Homo sapiens" [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0007000 "nucleolus
organization" evidence=IEA] [GO:0007028 "cytoplasm organization"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048872 "homeostasis of number of cells"
evidence=IEA] [GO:0070063 "RNA polymerase binding" evidence=IEA]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Pfam:PF05327 GO:GO:0045893 GO:GO:0043066 GO:GO:0005654
GO:GO:0005730 GO:GO:0008283 GO:GO:0001701 GO:GO:0042254
GO:GO:0048872 Reactome:REACT_1788 GO:GO:0006361 GO:GO:0007000
GO:GO:0007028 GO:GO:2000142 EMBL:AJ272050 EMBL:AF227156
EMBL:AK314769 EMBL:CH471301 EMBL:BC071868 EMBL:BC132688
EMBL:BC132690 IPI:IPI00152960 RefSeq:NP_060897.3 UniGene:Hs.460078
ProteinModelPortal:Q9NYV6 IntAct:Q9NYV6 MINT:MINT-249163
STRING:Q9NYV6 PhosphoSite:Q9NYV6 DMDM:74719591 PRIDE:Q9NYV6
DNASU:54700 Ensembl:ENST00000198767 GeneID:54700 KEGG:hsa:54700
UCSC:uc002dde.3 CTD:54700 GeneCards:GC16M015153 H-InvDB:HIX0012886
H-InvDB:HIX0038660 H-InvDB:HIX0038739 HGNC:HGNC:30346 HPA:HPA049837
MIM:605121 neXtProt:NX_Q9NYV6 PharmGKB:PA134878601 eggNOG:NOG275643
HOGENOM:HOG000236344 HOVERGEN:HBG056994 InParanoid:Q9NYV6 KO:K15216
OMA:STPWFLM OrthoDB:EOG4XD3QT PhylomeDB:Q9NYV6 GenomeRNAi:54700
NextBio:57257 ArrayExpress:Q9NYV6 Bgee:Q9NYV6 CleanEx:HS_RRN3
Genevestigator:Q9NYV6 GermOnline:ENSG00000085721 InterPro:IPR007991
PANTHER:PTHR12790 Uniprot:Q9NYV6
Length = 651
Score = 423 (154.0 bits), Expect = 2.6e-39, P = 2.6e-39
Identities = 91/258 (35%), Positives = 140/258 (54%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
CH V + + + E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 362 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI 420
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
+K+CL+ + W H YL+N D + C H FYS CQA+F ++H L+ K
Sbjct: 421 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 480
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ +++LQSLN R+VMSQLNPL+ C +V+ FA+ITN YQ+V+CY +I +N R +LP+
Sbjct: 481 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPV 539
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
+ + A G+ +++ T N LD + PF +L R K I P D + Q
Sbjct: 540 IRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF- 592
Query: 301 IADPVSSKQADHDEDDFL 318
P+ + ++DDFL
Sbjct: 593 -KKPMKKDIVEDEDDDFL 609
Score = 179 (68.1 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L+ +F+ +LPTH HV F +FY CS +L E F+E LWKK+ + I RQ+
Sbjct: 343 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQA 402
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFL--WKKI 92
+Y+ S L A F+P+ ++ ++ L W I
Sbjct: 403 AGNYIGSFLARAKFIPLITVKSCLDLLVNWLHI 435
>RGD|1305001 [details] [associations]
symbol:Rrn3 "RRN3 RNA polymerase I transcription factor homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0001701 "in
utero embryonic development" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISO] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=ISO] [GO:0007000 "nucleolus
organization" evidence=ISO] [GO:0007028 "cytoplasm organization"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0042254 "ribosome biogenesis" evidence=ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0048872 "homeostasis of number of cells"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=ISO]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=ISO] RGD:1305001 Pfam:PF05327 GO:GO:0045893 GO:GO:0043066
GO:GO:0008283 GO:GO:0001701 GO:GO:0042254 GO:GO:0048872
GO:GO:0006361 GO:GO:0007000 GO:GO:0007028 GO:GO:2000142 CTD:54700
eggNOG:NOG275643 HOGENOM:HOG000236344 HOVERGEN:HBG056994 KO:K15216
OrthoDB:EOG4XD3QT InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:BC166485 IPI:IPI00765160
RefSeq:NP_001129318.1 UniGene:Rn.159763 STRING:B2GV13
Ensembl:ENSRNOT00000004459 GeneID:304714 KEGG:rno:304714
UCSC:RGD:1305001 NextBio:653501 Genevestigator:B2GV13
Uniprot:B2GV13
Length = 661
Score = 416 (151.5 bits), Expect = 1.8e-38, P = 1.8e-38
Identities = 90/258 (34%), Positives = 141/258 (54%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
C + SLL+ E F+E LWKK+ + I RQ+ +Y+ S L A F+P+
Sbjct: 370 CSFKLSLLLQG------FAEAFLEHLWKKLQDPNNPVIIRQAAANYIGSFLARAKFIPLI 423
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
+K+CL+ + W H YL++ D + C H FYS CQA+F + ++H L+ K
Sbjct: 424 TVKSCLDLLVNWLHLYLNSQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNLK 483
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
+ +++LQSLN R+V+SQLNPL+ C +V+ FA+ITN YQ+V+CY ++ +N R +LP+
Sbjct: 484 EGLRYLQSLNFERIVLSQLNPLKICLPRVVNFFAAITNKYQLVFCYTIMERNNR-QMLPV 542
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
+ + A G+ ++ T N LD + PF +L R K I P D + Q L
Sbjct: 543 IRSTAGGDSVQTCT-NPLDTFFPFDPCMLKRSKKFIDPVYQAWED-----MSDEELQEL- 595
Query: 301 IADPVSSKQADHDEDDFL 318
P + + ++DDFL
Sbjct: 596 -RKPTRKELVEDEDDDFL 612
Score = 169 (64.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSI-----GENFIEFLWKKIANVKIYN 56
L+ +L+++F+ +LPTH HV F +F+ CS +LS+ E F+E LWKK+ +
Sbjct: 341 LYRDLISIFDKLVLPTHASCHVQFFMFFLCSFKLSLLLQGFAEAFLEHLWKKLQDPNNPV 400
Query: 57 IFRQSCCHYVSSLLIHAHFMPVSIGENFIEFL 88
I RQ+ +Y+ S L A F+P+ ++ ++ L
Sbjct: 401 IIRQAAANYIGSFLARAKFIPLITVKSCLDLL 432
>ZFIN|ZDB-GENE-080225-1 [details] [associations]
symbol:rrn3 "RRN3 RNA polymerase I transcription
factor homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] Pfam:PF05327 ZFIN:ZDB-GENE-080225-1 CTD:54700
KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:CR388147 IPI:IPI00618202
RefSeq:XP_706962.2 UniGene:Dr.114417 Ensembl:ENSDART00000114265
GeneID:558718 KEGG:dre:558718 Bgee:F1QK07 Uniprot:F1QK07
Length = 612
Score = 404 (147.3 bits), Expect = 2.2e-37, P = 2.2e-37
Identities = 87/258 (33%), Positives = 137/258 (53%)
Query: 63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
CH V + + + + E F++ LWK + ++ RQS Y+ S + A F+PV
Sbjct: 326 CH-VQFYMFYLCSFRLGLAEAFLDHLWKLLQGPNQPSVLRQSAAGYMGSFMARAKFLPVS 384
Query: 123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
+K CL+ + W H Y+D+ D + C H FY+ CQA+F + +KH+ +++ K
Sbjct: 385 TVKACLDLLVPWLHLYIDSQDSGSKAFCDINLHGPFYTACQAVFYTLIFKHNAILEGNMK 444
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
K + +LQ LNL R+VM QLNPLR C + + FA+IT YQ+V+CY +I +N R ++LP+
Sbjct: 445 KGLAYLQGLNLERIVMCQLNPLRVCLPAVTNMFAAITRKYQLVFCYTIIERNNR-HLLPV 503
Query: 241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
V + G+ + NT N LD + PF +LL +I P +P + +
Sbjct: 504 VRSSVGGSSVATNT-NPLDSFFPFDPYLLKSSGKLIEPIYQVWEEPSDCMIGVPKKEI-- 560
Query: 301 IADPVSSKQADHDEDDFL 318
P S + +EDDFL
Sbjct: 561 ---PKGSME---EEDDFL 572
Score = 184 (69.8 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
L+ +L++VF+ +LPTH HV F +FY CS RL + E F++ LWK + ++ RQS
Sbjct: 307 LYRDLVSVFDKVVLPTHASCHVQFYMFYLCSFRLGLAEAFLDHLWKLLQGPNQPSVLRQS 366
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFL 88
Y+ S + A F+PVS + ++ L
Sbjct: 367 AAGYMGSFMARAKFLPVSTVKACLDLL 393
>FB|FBgn0032988 [details] [associations]
symbol:Tif-IA "Tif-IA" species:7227 "Drosophila melanogaster"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006356 "regulation of transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IDA] Pfam:PF05327 EMBL:AE014134 GO:GO:0042254
eggNOG:NOG275643 KO:K15216 OMA:STPWFLM InterPro:IPR007991
PANTHER:PTHR12790 GeneTree:ENSGT00390000001488 EMBL:AY061123
RefSeq:NP_788084.1 UniGene:Dm.485 IntAct:Q9V9M6 MINT:MINT-313590
STRING:Q9V9M6 EnsemblMetazoa:FBtr0085955 GeneID:35454
KEGG:dme:Dmel_CG3278 UCSC:CG3278-RA CTD:35454 FlyBase:FBgn0032988
InParanoid:Q9V9M6 OrthoDB:EOG4FTTG5 GenomeRNAi:35454 NextBio:793599
Uniprot:Q9V9M6
Length = 611
Score = 364 (133.2 bits), Expect = 6.9e-33, P = 6.9e-33
Identities = 74/213 (34%), Positives = 119/213 (55%)
Query: 64 HYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRV 123
H+V +L +A + E F++ LW K+ N + + R + Y++S L A F+P+
Sbjct: 339 HHVQFILFYATSLRSVYSEAFLDSLWTKVQNPNVSAVIRHAAVGYMASFLSRARFLPLST 398
Query: 124 IKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNM 183
+ L E+++W H+Y+D++D + CS + VFYSVCQA+F +I ++ L S K++
Sbjct: 399 VTFYLKELTRWAHTYIDDSDAYKQN-CSLKANLVFYSVCQAVFYLIAFRAKDLTASSKDL 457
Query: 184 KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVST 243
FLQSL L+RL M LNPLR C A + + FA +T TYQ+ YC+ V+ +NAR + +
Sbjct: 458 LFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCHTVLERNARRKLATVYGH 517
Query: 244 DALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
+ K L+ + PF ++L K I
Sbjct: 518 E------KCMPDETLESFFPFDPYVLKLSKKYI 544
Score = 163 (62.4 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 34/106 (32%), Positives = 58/106 (54%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
LF LL +F+ +LP+H HV F++FY SLR E F++ LW K+ N + + R +
Sbjct: 320 LFKMLLYLFDEVLLPSHNTHHVQFILFYATSLRSVYSEAFLDSLWTKVQNPNVSAVIRHA 379
Query: 62 CCHYVSSLLIHAHFMPVSIGENFIEFL--WKKIANVKIYNIFRQSC 105
Y++S L A F+P+S +++ L W + + ++Q+C
Sbjct: 380 AVGYMASFLSRARFLPLSTVTFYLKELTRWAH-TYIDDSDAYKQNC 424
>POMBASE|SPAC18G6.11c [details] [associations]
symbol:rrn3 "ribosomal DNA (rDNA) transcription factor
Rrn3" species:4896 "Schizosaccharomyces pombe" [GO:0000120 "RNA
polymerase I transcription factor complex" evidence=IC] [GO:0001169
"RNA polymerase I CORE element sequence-specific DNA binding
transcription factor activity" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IMP] PomBase:SPAC18G6.11c Pfam:PF05327 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000120
eggNOG:NOG275643 KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790
PIR:T37924 RefSeq:NP_593674.1 STRING:Q10110
EnsemblFungi:SPAC18G6.11c.1 GeneID:2542511 KEGG:spo:SPAC18G6.11c
OMA:CELAIRH OrthoDB:EOG44XNR6 NextBio:20803564 GO:GO:0001169
Uniprot:Q10110
Length = 599
Score = 192 (72.6 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 64/244 (26%), Positives = 109/244 (44%)
Query: 45 LWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQS 104
L K N + FR C Y L+ A + + F+ L + + R S
Sbjct: 343 LIKSFVNT-VLKTFR---CRYTQFLIFWASQLDPEFTDIFLGVLTEVCLDPSQPYTLRLS 398
Query: 105 CCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDN--TDLTDEEACSPVKHPVFYSVC 162
Y+ S + A + I+ +N M++W +YLD +L+D+ KH VFY++
Sbjct: 399 GAMYIGSYVARAKALEKNTIQIIVNMMTRWVEAYLDQCENELSDDLLS---KHSVFYAIN 455
Query: 163 QALFSVITYK-HSILV-DSKKNMK-----FLQSLN-LTRLVMSQLNPLRSCNAEIVSHFA 214
Q++F + ++ + V D ++M+ ++ L L R V+S+LNPLR C+ IV FA
Sbjct: 456 QSIFYIFCFRWRELCVSDESESMEPRPNEWIPGLEILHRSVLSRLNPLRYCSPNIVLQFA 515
Query: 215 SITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKS 274
+ N +Y Y++I QN + I + + +D Y PF + L +
Sbjct: 516 KVANHLNFMYVYSIIEQNRK-------------GIFR-EGFDTMDAYFPFDPYRLTKSSI 561
Query: 275 IITP 278
I+ P
Sbjct: 562 IVQP 565
>CGD|CAL0002535 [details] [associations]
symbol:RRN3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0001180 "transcription initiation from RNA
polymerase I promoter for nuclear large rRNA transcript"
evidence=IEA] [GO:0001082 "RNA polymerase I transcription factor
binding transcription factor activity" evidence=IEA] [GO:0001181
"core RNA polymerase I binding transcription factor activity"
evidence=IEA] [GO:0001042 "RNA polymerase I core binding"
evidence=IEA] [GO:0001169 "RNA polymerase I CORE element
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0001179 "RNA polymerase I transcription factor
binding" evidence=IEA] CGD:CAL0002535 Pfam:PF05327 eggNOG:NOG275643
KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790 EMBL:AACQ01000264
EMBL:AACQ01000263 RefSeq:XP_710469.1 RefSeq:XP_710488.1
STRING:Q59L42 GeneID:3647925 GeneID:3647935 KEGG:cal:CaO19.1923
KEGG:cal:CaO19.9479 Uniprot:Q59L42
Length = 556
Score = 169 (64.5 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 49/225 (21%), Positives = 98/225 (43%)
Query: 64 HYVSSL---LIH-AHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFM 119
H+ S+ L H F P + ++++ L N R Y+SS + A +
Sbjct: 313 HFTKSIQFILFHITQFQP-ELADSYLVLLIDVAFNPSEILEKRLKAMQYLSSYIARAKNL 371
Query: 120 PVRVIKTCLNEMSQWCHSYLDNTDLT-----DEEACSPVKHPVFYSVCQALFSVITYKHS 174
+ ++ + W + ++ + D++ + +FY+ QAL + ++H
Sbjct: 372 SRHQVIFIVSYLVGWLNKFIIEREQEVESSGDKQVGGMERFKLFYAAFQALLYIFCFRHE 431
Query: 175 ILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNAR 234
+L ++ + + R ++++ NPL+ C+ +V FA + + YCY++I N R
Sbjct: 432 LLSTTENDWECDLDKFFQRAILTKFNPLKFCDETVVYIFAKLATKLNVCYCYSIIEHNKR 491
Query: 235 LNVLPIVST-DALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
+L + A+GN + L+ Y PF +L KSI+ P
Sbjct: 492 ERMLHTNALPSAVGNFKQKQEFLDLEAYFPFDPLVLPISKSIVAP 536
>SGD|S000001608 [details] [associations]
symbol:RRN3 "Protein required for transcription of rDNA by
RNA polymerase I" species:4932 "Saccharomyces cerevisiae"
[GO:0001042 "RNA polymerase I core binding" evidence=IDA;IPI]
[GO:0001082 "RNA polymerase I transcription factor binding
transcription factor activity" evidence=IGI;IDA;IPI] [GO:0001181
"core RNA polymerase I binding transcription factor activity"
evidence=IGI;IDA;IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0001180
"transcription initiation from RNA polymerase I promoter for
nuclear large rRNA transcript" evidence=IMP] [GO:0001179 "RNA
polymerase I transcription factor binding" evidence=IDA;IPI]
InterPro:IPR016024 SGD:S000001608 Pfam:PF05327 SUPFAM:SSF48371
GO:GO:0005730 EMBL:BK006944 GO:GO:0001042 eggNOG:NOG275643
KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:Z71927 EMBL:Z28125 PIR:S37954
RefSeq:NP_012797.1 PDB:3TJ1 PDBsum:3TJ1 ProteinModelPortal:P36070
SMR:P36070 DIP:DIP-6657N IntAct:P36070 MINT:MINT-624762
STRING:P36070 PaxDb:P36070 PeptideAtlas:P36070 PRIDE:P36070
EnsemblFungi:YKL125W GeneID:853734 KEGG:sce:YKL125W CYGD:YKL125w
HOGENOM:HOG000093739 OMA:MYVLCFR OrthoDB:EOG4TMV9M NextBio:974778
Genevestigator:P36070 GermOnline:YKL125W GO:GO:0001181
GO:GO:0001179 GO:GO:0001082 GO:GO:0001180 Uniprot:P36070
Length = 627
Score = 149 (57.5 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 39/155 (25%), Positives = 74/155 (47%)
Query: 108 YVSSLLIHAHFMPVRVIKTCLNEMSQWCHSY-LDNTDLTDEEA-CSPVKHPVFYSVCQAL 165
Y+ S + A + I + ++ W + Y ++ + D+ KH FY+ QAL
Sbjct: 423 YLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKH--FYAAFQAL 480
Query: 166 FSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYC 225
+ ++H+I D+ N + R+V+S+ NPL+ CN ++ FA I + YC
Sbjct: 481 CYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYC 540
Query: 226 YNVI--HQNARLN-VLPIVSTDALGNIIKLNTVNA 257
+++I + N RL ++ +D N + NT ++
Sbjct: 541 FSIIENNNNERLRGIIGKADSDKKENSAQANTTSS 575
Score = 64 (27.6 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFI 42
+FN L +F++ +LPT+ + +++F+ +L + ++F+
Sbjct: 360 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFL 400
>WB|WBGene00007980 [details] [associations]
symbol:C36E8.1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] Pfam:PF05327 GO:GO:0008340
GO:GO:0040010 GO:GO:0000003 eggNOG:NOG275643 KO:K15216
InterPro:IPR007991 PANTHER:PTHR12790 GeneTree:ENSGT00390000001488
OMA:CELAIRH EMBL:Z35597 PIR:T19785 RefSeq:NP_497803.1
ProteinModelPortal:P48322 STRING:P48322 PaxDb:P48322
EnsemblMetazoa:C36E8.1.1 EnsemblMetazoa:C36E8.1.2 GeneID:175517
KEGG:cel:CELE_C36E8.1 UCSC:C36E8.1.1 CTD:175517 WormBase:C36E8.1
HOGENOM:HOG000017211 InParanoid:P48322 NextBio:888492
Uniprot:P48322
Length = 654
Score = 161 (61.7 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 41/169 (24%), Positives = 79/169 (46%)
Query: 65 YVSSLLIHAHFMPVSIGENFIEFLWK---KIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
YVS + ++ + + +E LW+ ++ Q Y+++ L A ++
Sbjct: 372 YVSFIWLYFCSLSQEYEKKMLEHLWQVTIRMPRAPADARKSQGAASYLAAFLARAKYVKK 431
Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV-KHPVFYSVCQALFSVITYKHSILVDSK 180
T L E+ W Y+D + + +H FYSV QA F V +++ V +K
Sbjct: 432 STAFTWLEEVYIWLRHYVDQFGSGSSQILPGLQRHGTFYSVSQAFFLVFAFRYKEFVKNK 491
Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
++ ++ + R+V S L PL+ + + F++IT + Q+VYC ++I
Sbjct: 492 DMLETIRRWGVGRVVHSPLEPLKYVSKPVARCFSAITRSLQLVYCNHII 540
>TAIR|locus:2061574 [details] [associations]
symbol:AT2G34750 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] Pfam:PF05327 EMBL:CP002685
GO:GO:0003743 UniGene:At.12517 KO:K15216 InterPro:IPR007991
PANTHER:PTHR12790 OMA:MYVLCFR HOGENOM:HOG000030489
ProtClustDB:CLSN2682307 EMBL:AY096642 EMBL:AY142672 IPI:IPI00528068
RefSeq:NP_850236.1 ProteinModelPortal:Q8L643 IntAct:Q8L643
STRING:Q8L643 PRIDE:Q8L643 EnsemblPlants:AT2G34750.1 GeneID:818040
KEGG:ath:AT2G34750 TAIR:At2g34750 InParanoid:Q8L643
PhylomeDB:Q8L643 Genevestigator:Q8L643 Uniprot:Q8L643
Length = 613
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 65/280 (23%), Positives = 113/280 (40%)
Query: 39 ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFM-PVSIGENFIEFLWKKIANVKI 97
+ E L+K N I N ++ + L+ +A + P + G F L + +
Sbjct: 313 DQVFESLFKSFENF-ILNTYKSK---FTQFLIFYACSLDPENCGVKFASKLVEIFLSSNK 368
Query: 98 YNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPV 157
+ R S Y++S L F+PV + + L + C Y T + P H +
Sbjct: 369 HVATRMSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCR----TCNDDTRPEAHQI 424
Query: 158 FYSVCQALFSVITYKHSILVDSKKNMKFLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASI 216
F+S CQA+ V+ ++ ++D + F L L ++M +LNPL C +V+ F
Sbjct: 425 FFSGCQAIMYVLCFRMRSILDVPR---FRSQLTPLESILMHKLNPLMVCLPSVVAEFLRQ 481
Query: 217 TNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
+ + V ++L + A G +L+T + PF LL S I
Sbjct: 482 AKEGGL---FIVSDSFIFDDLLESELSRAFGGFERLDT------FFPFDPCLLKSSNSFI 532
Query: 277 TPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDD 316
+P + T + + N A+ + + D DEDD
Sbjct: 533 SPNF-IYWSMVKATYDEDDDDN--DAEVIVNGDEDSDEDD 569
>TAIR|locus:2204609 [details] [associations]
symbol:AT1G30590 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] Pfam:PF05327 EMBL:CP002684
GO:GO:0003743 KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790
IPI:IPI00533308 RefSeq:NP_174347.1 UniGene:At.65753
ProteinModelPortal:F4I6D6 PRIDE:F4I6D6 EnsemblPlants:AT1G30590.1
GeneID:839939 KEGG:ath:AT1G30590 OMA:CIKLDVE Uniprot:F4I6D6
Length = 604
Score = 138 (53.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 57/245 (23%), Positives = 98/245 (40%)
Query: 39 ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFM-PVSIGENFIEFLWKKIANVKI 97
+ E L+K N I N ++ + L+ +A + P + G F L +
Sbjct: 300 DEVFEILFKSFENY-ILNTYKTKFSQF---LMFYACSLDPENCGVRFASKLLDIYLSSNT 355
Query: 98 YNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPV 157
+ R S Y++S L F+P + + L + C Y T + P H V
Sbjct: 356 CRLTRMSAVAYLASYLSRGKFLPASFVASMLKRLVDECAEYCG----TCNDDVKPEAHQV 411
Query: 158 FYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASIT 217
FYS CQA+ V+ ++ +V+ + +SL ++ +LNPL C +VS F
Sbjct: 412 FYSGCQAILYVLCFRMRSIVEIPRFQSQFRSLE--SILSHKLNPLLVCLPSVVSEFLKQA 469
Query: 218 NTYQI-VYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSII 276
+ + + I + + L + A G +L+T + PF LL S I
Sbjct: 470 KAGGLFIVSESFIFDDLHESEL----SRAFGGFERLDT------FFPFDPCLLKMSSSYI 519
Query: 277 TPEIH 281
+P +
Sbjct: 520 SPNFN 524
>TAIR|locus:2056063 [details] [associations]
symbol:AT2G39240 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISS] Pfam:PF05327 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003743 KO:K15216
InterPro:IPR007991 PANTHER:PTHR12790 EMBL:DQ446608 IPI:IPI00533789
RefSeq:NP_181457.2 UniGene:At.53072 ProteinModelPortal:Q1PEV9
STRING:Q1PEV9 EnsemblPlants:AT2G39240.1 GeneID:818509
KEGG:ath:AT2G39240 TAIR:At2g39240 HOGENOM:HOG000030489
InParanoid:Q1PEV9 OMA:CNDDARP PhylomeDB:Q1PEV9
ProtClustDB:CLSN2682307 Genevestigator:Q1PEV9 Uniprot:Q1PEV9
Length = 573
Score = 129 (50.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 47/176 (26%), Positives = 73/176 (41%)
Query: 39 ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIY 98
EN E I N + F Q Y SL P + G F L +K +
Sbjct: 289 ENLFESFENLILNTQKLK-FSQFLMFYACSL------DPENCGVKFASKLLEKFLSSNNN 341
Query: 99 NIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVF 158
+ R + Y++S L A+F+ + + L + C Y T + P H VF
Sbjct: 342 QVTRTNAVTYLASYLARANFLSASFVASMLKRLVDECADYCR----TCNDDARPEVHQVF 397
Query: 159 YSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMS-QLNPLRSCNAEIVSHF 213
YS CQA+ V+ ++ +++ F L V+S +L+PLR C + +VS F
Sbjct: 398 YSGCQAILYVLCFRMRSILEVPH---FQSQLTPLESVLSHKLDPLRVCLSSVVSEF 450
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.137 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 323 323 0.00086 116 3 11 22 0.44 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 606 (64 KB)
Total size of DFA: 231 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.56u 0.13s 27.69t Elapsed: 00:00:04
Total cpu time: 27.56u 0.13s 27.69t Elapsed: 00:00:04
Start: Thu Aug 15 14:45:09 2013 End: Thu Aug 15 14:45:13 2013