RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13564
         (323 letters)



>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 72

 Score = 27.3 bits (60), Expect = 0.61
 Identities = 9/47 (19%), Positives = 14/47 (29%)

Query: 87  FLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQ 133
           F  +K        +F   C      L  +     VRV   C   + +
Sbjct: 25  FTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 71


>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia
           coli [TaxId: 562]}
          Length = 391

 Score = 28.0 bits (61), Expect = 1.6
 Identities = 10/136 (7%), Positives = 40/136 (29%)

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                +  L+      +           +   N  +      +   Y++S  +    + +
Sbjct: 200 SIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRL 259

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
           R       ++++W   +     +          H  +         + ++     +++++
Sbjct: 260 RQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEE 319

Query: 182 NMKFLQSLNLTRLVMS 197
              +L + +L  +  S
Sbjct: 320 LANYLDNFSLFSMAYS 335


>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 67

 Score = 25.7 bits (56), Expect = 2.0
 Identities = 10/47 (21%), Positives = 15/47 (31%)

Query: 87  FLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQ 133
            L +K        +F Q        L     + PVRV  +C  +   
Sbjct: 17  LLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEF 63


>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 88

 Score = 26.2 bits (57), Expect = 2.2
 Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 99  NIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSP 152
             F   C  + S+L+  A     +V K C   +++                  P
Sbjct: 33  RAFCNGCLSF-SALVPRAGNTQQKVCKQCHTILTRGSSDNASKWSPPQNYKSGP 85


>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase
           BC4754 {Bacillus cereus [TaxId: 1396]}
          Length = 172

 Score = 26.1 bits (56), Expect = 5.2
 Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 1/94 (1%)

Query: 78  VSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHS 137
           V +GE    +    I       I            L  +   P+ +            HS
Sbjct: 31  VYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS 90

Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALF-SVIT 170
                D         +              S+++
Sbjct: 91  CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVS 124


>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Klebsiella pneumoniae [TaxId: 573]}
          Length = 519

 Score = 25.8 bits (56), Expect = 8.3
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 103 QSCCHYVSSLLIHAHFMPVRVIKTCLNEMS 132
           Q C  Y  +        P+  +   + E +
Sbjct: 91  QGCVAYFRTYFNRHFKEPIACVSDSMTEDA 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,210,103
Number of extensions: 54276
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 9
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.7 bits)