RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13565
(182 letters)
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 218 bits (559), Expect = 5e-71
Identities = 69/87 (79%), Positives = 78/87 (89%)
Query: 1 MKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLD 60
MK+ AE YLG KVTHAVVTVPAYFNDAQRQATKDAG IAGL V+RI+NEPTAAAIAYGLD
Sbjct: 141 MKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLD 200
Query: 61 KKEGEKNVLVFDLGGGTFDVSLLTIDN 87
K + E ++V+DLGGGTFDVSLL+I+N
Sbjct: 201 KSDKEHQIIVYDLGGGTFDVSLLSIEN 227
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 209 bits (534), Expect = 3e-67
Identities = 72/90 (80%), Positives = 79/90 (87%), Gaps = 3/90 (3%)
Query: 1 MKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLD 60
MKE AEAYLG KV AV+TVPAYFND+QRQATKDAG I GL V+RIINEPTAAAIAYGLD
Sbjct: 146 MKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLD 205
Query: 61 KKE---GEKNVLVFDLGGGTFDVSLLTIDN 87
KK GEKNVL+FDLGGGTFDVS+LTI++
Sbjct: 206 KKGCAGGEKNVLIFDLGGGTFDVSILTIED 235
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 210 bits (538), Expect = 3e-66
Identities = 73/88 (82%), Positives = 79/88 (89%), Gaps = 1/88 (1%)
Query: 1 MKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLD 60
MKE AEAYLGK VT+AVVTVPAYFND+QRQATKDAG IAGL V+RIINEPTAAAIAYGLD
Sbjct: 127 MKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLD 186
Query: 61 KKE-GEKNVLVFDLGGGTFDVSLLTIDN 87
KK E+NVL+FDLGGGTFDVS+LTI
Sbjct: 187 KKVGAERNVLIFDLGGGTFDVSILTIAA 214
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 185 bits (473), Expect = 3e-58
Identities = 64/87 (73%), Positives = 74/87 (85%)
Query: 1 MKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLD 60
MK+TAE YLG+ VT AV+TVPAYFNDAQRQATKDAG IAGL V RIINEPTAAA+AYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 61 KKEGEKNVLVFDLGGGTFDVSLLTIDN 87
K G + + V+DLGGGTFD+S++ ID
Sbjct: 183 KGTGNRTIAVYDLGGGTFDISIIEIDE 209
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 189 bits (483), Expect = 2e-57
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 1 MKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLD 60
+K+T + +T + VP ++ + QR DA IAGL +RI+N+ TAA ++YG+
Sbjct: 126 VKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIF 185
Query: 61 KK------EGEKNVLVFDLGGGTFDVSLLTIDN 87
K E + V D+G ++ S++
Sbjct: 186 KTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKK 218
Score = 73.5 bits (181), Expect = 6e-16
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 113 QITDAEKTTMEEAIDDKIKWL-DENQDADAPEFQKKKKELEDVVQPIIAKLYQGAGGAPP 171
+DAEKT ++ ++ +WL DE D+ ++ K +EL + I +
Sbjct: 574 FASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQ 633
Query: 172 PPGGDAGKDE 181
+
Sbjct: 634 AIRSKQEASQ 643
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 181 bits (461), Expect = 1e-54
Identities = 64/87 (73%), Positives = 74/87 (85%)
Query: 1 MKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLD 60
MK+TAE YLG+ VT AV+TVPAYFNDAQRQATKDAG IAGL V RIINEPTAAA+AYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 61 KKEGEKNVLVFDLGGGTFDVSLLTIDN 87
K G + + V+DLGGGTFD+S++ ID
Sbjct: 183 KGTGNRTIAVYDLGGGTFDISIIEIDE 209
Score = 29.1 bits (66), Expect = 0.73
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 113 QITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQ 164
++ +KT +E A+ ++ + +D A + K +EL V Q ++ Q
Sbjct: 556 KLPADDKTAIESALTA-LETALKGEDKAA--IEAKMQELAQVSQKLMEIAQQ 604
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 173 bits (441), Expect = 2e-52
Identities = 63/85 (74%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 1 MKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLD 60
+K AE YLG+ VT AV+TVPAYFNDAQRQATKDAG IAGL V RIINEPTAAA+AYGLD
Sbjct: 97 LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLD 156
Query: 61 KKEGEKNVLVFDLGGGTFDVSLLTI 85
K+E + +LV+DLGGGTFDVS+L +
Sbjct: 157 KEEDQT-ILVYDLGGGTFDVSILEL 180
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 84.6 bits (210), Expect = 2e-20
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 1 MKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLD 60
+K E LG ++ A +P +A AGL ++ +++EP AAA A G++
Sbjct: 80 LKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN 139
Query: 61 KKEGEKNVLVFDLGGGTFDVSLL 83
+V D+GGGT ++++
Sbjct: 140 DG------IVVDIGGGTTGIAVI 156
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 78.8 bits (194), Expect = 1e-19
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 114 ITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQGAGGAPPPP 173
I+ +K +E+ D+ +KWLD NQ A+ EF+ ++K+LE + PII+KLYQ AGGAPP
Sbjct: 43 ISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGA 102
Query: 174 GGDAG 178
Sbjct: 103 APGGA 107
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 77.3 bits (190), Expect = 4e-19
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 114 ITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQGAGGAPPPP 173
I++A+K + + + I WLD N A+ EF+ K+KELE V PII+ LYQGAGG P
Sbjct: 34 ISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGGPGPGG 93
Query: 174 GGDAG 178
G G
Sbjct: 94 FGAQG 98
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 76.6 bits (188), Expect = 8e-19
Identities = 29/65 (44%), Positives = 39/65 (60%)
Query: 114 ITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQGAGGAPPPP 173
I D +K + + ++ I WLD+NQ A+ EF+ ++KELE V PII KLYQ AGG P
Sbjct: 29 INDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGM 88
Query: 174 GGDAG 178
G
Sbjct: 89 PGGFP 93
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 68.3 bits (166), Expect = 3e-14
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 6/161 (3%)
Query: 6 EAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLDKKEGE 65
Y + + + +++ T + G + ++++ E A + E
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDE-L 163
Query: 66 KNVLVFDLGGGTFDVSLLT--IDNDHRRRKDHHGGGDRRQDQVAPFLFLQITDAEKTTME 123
++L+ DLGG T D+S + + + D G V L L T +
Sbjct: 164 DSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLAD 223
Query: 124 EAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQ 164
+ I + D N + K + + + + KL Q
Sbjct: 224 DIIIHR---KDNNYLKQRINDENKISIVTEAMNEALRKLEQ 261
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 60.6 bits (146), Expect = 2e-11
Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 21/182 (11%)
Query: 2 KETAEAYLGKKVTHAVVT-VPAYFNDAQRQATKDA------------GVIAGLTVMRIIN 48
E+ G V + + P D + +A K+A G + + R+I
Sbjct: 109 WESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIM 168
Query: 49 EPTAAAIAYGL----DKKEGEKNVLVFDLGGGTFDVSLLTIDN---DHRRRKDHHGGGDR 101
P A L ++ +V D+G T DV + + + G
Sbjct: 169 RPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGD 228
Query: 102 RQDQVAPFLFLQITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKEL-EDVVQPIIA 160
++ + + + + + Q ++L +++ I
Sbjct: 229 AISALSRKIAKETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILEDLANRIIENIRL 288
Query: 161 KL 162
L
Sbjct: 289 NL 290
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 55.4 bits (133), Expect = 8e-10
Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 19/167 (11%)
Query: 15 HAVVTVPA--YFNDAQRQATKDA------------GVIAGLTVMRIINEPTAAAIAYGLD 60
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 61 KKEGEKNVLVFDLGGGTFDVSLLT-IDNDHRRRKDHHGGGDRRQDQVAPFLFLQITDAEK 119
+ KNV V D GG SL + R G +V L
Sbjct: 167 ENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTDLNNGNLI 226
Query: 120 TT--MEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQ 164
T E A+++ D ++ KK E ++ I + +
Sbjct: 227 TNEQAESALNNGYMKKGGEIDTESSTV--IKKVKEKFLKDAIKLIEK 271
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 47.2 bits (112), Expect = 7e-07
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Query: 39 AGLTVMRIINEPTAAAIAYG-LDKKEGEKNVLVFDLGGGTFDVSLLTIDNDHRRRKDHHG 97
AGL + + +P A +E ++ LV D+G + + LL + +
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR-GDKPLAVRVLTL 221
Query: 98 GGDRRQDQVAPFLFLQITDAEKTTMEEAI-DDKIKWLDENQDADAPEFQKKKKELEDVVQ 156
G + +A L + AE+ + + + D DA + + D ++
Sbjct: 222 SGKDFTEAIARSFNLDLLAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIR 281
Query: 157 PIIAKLYQ 164
P++ +L Q
Sbjct: 282 PVLVELTQ 289
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 46.6 bits (110), Expect = 1e-06
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 14/126 (11%)
Query: 45 RIINEPTAAAIAYGLDKKEG-----EKNVLVFDLGGGTFDVSLLT-IDNDHRRRKDHHGG 98
+I+ +P + ++ + E V D G GT + + + G
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKG 217
Query: 99 GDRRQDQVAPFLFLQITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPI 158
++A + + A T I+ ++ QK + +D
Sbjct: 218 TIDFYKRIASHVSKKSEGASIT--PRMIEKGLE------YKQCKLNQKTVIDFKDEFYKE 269
Query: 159 IAKLYQ 164
L +
Sbjct: 270 QDSLIE 275
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 41.7 bits (99), Expect = 4e-05
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 17 VVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEPTAAAIAYGLDKKEGEKNVLVFDLGGG 76
V+ VP D +R+A DAG+ AG + + +I EP AAAI L+ +E N++V D+GGG
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVV-DIGGG 157
Query: 77 TFDVSLL 83
T +V+++
Sbjct: 158 TTEVAVI 164
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 35.0 bits (81), Expect = 0.008
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 39 AGLTVMRIINEPTAAAIAYGLDKKEGEKNVLVFDLGGGTFDVSL 82
+ ++ + + A L E ++ V+V +LG +
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEKDRGVVVVNLGYNFTGLIA 222
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 30.3 bits (69), Expect = 0.27
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 113 QITDAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQGAG 167
++ +KT +E A+ ++ + +D A + K +EL V Q ++ Q
Sbjct: 168 KLPADDKTAIESALTA-LETALKGEDKAA--IEAKMQELAQVSQKLMEIAQQQHA 219
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase;
HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A*
2x60_A* 2x5s_A*
Length = 336
Score = 29.7 bits (68), Expect = 0.52
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 17 VVTVPAYFNDAQRQATKDAGVIAGLTVMRIINEP----TAAAIAYGLDKKEGEKNVLVF 71
VVT + + TK + L II EP TA A G + ++ VLV
Sbjct: 55 VVT-----HKDYVERTKKE--LPELPDENIIAEPMKKNTAPACFIGTKLADDDEPVLVL 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.68
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 29/122 (23%)
Query: 70 VFDLG----GGTFDVSLLTIDNDHRRRKDHHGGGDRRQ---DQVAPFLFLQITDAEKTTM 122
V++ T+ S+L I ++ H GG++ + + + +F I D + T
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 123 E--EAIDDKIK---WLDENQDADAPEFQKKKKELEDVVQPIIA-------KLYQGAGGAP 170
+ + I++ + E A +F QP + + + G P
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFT----------QPALTLMEKAAFEDLKSKGLIP 1754
Query: 171 PP 172
Sbjct: 1755 AD 1756
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2,
X-RAY, structure, structural genomics, PSI-2; 2.40A
{Bifidobacterium longum NCC2705}
Length = 343
Score = 28.8 bits (65), Expect = 0.90
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 56 AYGLDKKEGEKNVLVFDLGGG 76
+++ + LV DLGGG
Sbjct: 136 TSVVNRDDLPAPYLVVDLGGG 156
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed
conformation, bromopyuvate modification, structural
genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP:
c.1.12.7 PDB: 1f61_A 1f8i_A
Length = 429
Score = 27.7 bits (61), Expect = 2.3
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 116 DAEKTTMEEAIDDKIKWLDENQDADAPEFQKKKKELEDVVQPIIAKLYQGAGGAP 170
D + + Q AD + +E+ + PI+A G GGA
Sbjct: 109 DQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGGAL 163
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 27.6 bits (62), Expect = 2.6
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 53 AAIAYGLDKKEGEKNVLVFD---LGGGT 77
A AY L K G NV V + L GG
Sbjct: 34 LATAYFLAKNHGITNVAVLEKGWLAGGN 61
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 27.6 bits (61), Expect = 2.8
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 46 IINEPTAAAIAYGLDKKEGEKNVLVFDLGGGTFDVSLLTIDNDHRRRKDHHGG 98
+ AIA L + + DLG G+ D ++ ++ + + H G
Sbjct: 389 VGGVEANMAIAGALTTPGCAAPLAILDLGAGSTDAAI--VNAEGQITAVHLAG 439
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 26.4 bits (58), Expect = 5.9
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 53 AAIAYGLDKKEGEKNVLVFDLGGGTFDVSLLTIDNDHRRRKDHHGG 98
AAI L + + + DLG G+ D S+ I+ H G
Sbjct: 394 AAILGALTTPGTTRPLAILDLGAGSTDASI--INPKGDIIATHLAG 437
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 9.1
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 119 KTTMEEAIDDKIKWLDENQDADAPEFQK---KKKELEDVVQ 156
K + D + D D + K K+E++ ++
Sbjct: 19 KDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHIIM 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.387
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,995,048
Number of extensions: 184807
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 45
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.5 bits)