BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13567
         (173 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZXU|B Chain B, Crystal Structure Of The Ctf19-Mcm21 Kinetochore
           Heterodimer From Yeast
 pdb|3ZXU|D Chain D, Crystal Structure Of The Ctf19-Mcm21 Kinetochore
           Heterodimer From Yeast
          Length = 270

 Score = 32.7 bits (73), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 31  NCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQY 83
           N + T   L         LP P P   ++ +K QK    L+ ++G   G ++Y
Sbjct: 213 NNTITLNDLEVSFHCYWNLPSPYPETLILTNKVQKILDFLIYQYGIQLGVIKY 265


>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
           Henselae
 pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
           Henselae
          Length = 484

 Score = 31.6 bits (70), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 53/153 (34%), Gaps = 30/153 (19%)

Query: 23  VPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQ 82
           V + E+C N   T G  +C  R+       P    L + +A                GV+
Sbjct: 258 VQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERA----------------GVK 301

Query: 83  YEE-GMTVPTEEHCLNCS--CTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCE 139
             E G  V  E+   N S     G +  H+++ P          + +H A  C  +   E
Sbjct: 302 VNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQLTP----------VAIHDAM-CFVKNAFE 350

Query: 140 HGKTTPDTSSVEIQHSLNPESDQTKFSAPAALH 172
           +  TTPD   +       PE      S   ALH
Sbjct: 351 NTSTTPDYDLITTAVFSQPEIGTVGLSEEDALH 383


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,864,647
Number of Sequences: 62578
Number of extensions: 242839
Number of successful extensions: 335
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 8
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)