RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13567
         (173 letters)



>gnl|CDD|215712 pfam00093, VWC, von Willebrand factor type C domain.  The high
          cutoff was used to prevent overlap with pfam00094.
          Length = 57

 Score = 31.6 bits (72), Expect = 0.025
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 10 CMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQ 69
          C+  GV YE G T    + C  C+C  G ++C    CP L  P PR   +     +CCP 
Sbjct: 1  CVQNGVVYENGETW-KPDLCTICTCDDGKVLCDKITCPPLDCPSPR---LEIPPGECCPV 56



 Score = 31.6 bits (72), Expect = 0.025
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 76  CMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQ 135
           C+  GV YE G T    + C  C+C  G ++C    CP L  P PR   +     +CCP 
Sbjct: 1   CVQNGVVYENGETW-KPDLCTICTCDDGKVLCDKITCPPLDCPSPR---LEIPPGECCPV 56


>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
          Length = 502

 Score = 29.3 bits (65), Expect = 1.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 18  EEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCL 58
           E+G T  TE+   N    R  +   LRI P +P   PR C+
Sbjct: 336 EKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACI 376



 Score = 29.3 bits (65), Expect = 1.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 84  EEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCL 124
           E+G T  TE+   N    R  +   LRI P +P   PR C+
Sbjct: 336 EKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACI 376


>gnl|CDD|132519 TIGR03479, DMSO_red_II_alp, DMSO reductase family type II enzyme,
           molybdopterin subunit.  This model represents the
           molybdopterin subunit, typically called the alpha
           subunit, of various proteins that also contain an
           iron-sulfur subunit and a heme b subunit. The group
           includes two distinct but very closely related
           periplasmic proteins of anaerobic respiration, selenate
           reductase and chlorate reductase. Other members of this
           family include dimethyl sulphide dehydrogenase,
           ethylbenzene dehydrogenase, and an archaeal respiratory
           nitrate reductase. This alpha subunit has a
           twin-arginine translocation (TAT) signal for
           Sec-independent translocation across the plasma
           membrane.
          Length = 912

 Score = 27.8 bits (62), Expect = 3.4
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 14/44 (31%)

Query: 28  HCLNC--SC-----TRGSLVC-------HLRICPTLPDPPPRGC 57
           H  NC  SC      +  +V        + +  P +PD  PRGC
Sbjct: 62  HLNNCTGSCAFYVYVKNGIVWREEQSADYPQCNPDIPDYNPRGC 105



 Score = 27.8 bits (62), Expect = 3.4
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 14/44 (31%)

Query: 94  HCLNC--SC-----TRGSLVC-------HLRICPTLPDPPPRGC 123
           H  NC  SC      +  +V        + +  P +PD  PRGC
Sbjct: 62  HLNNCTGSCAFYVYVKNGIVWREEQSADYPQCNPDIPDYNPRGC 105


>gnl|CDD|182207 PRK10045, PRK10045, acyl carrier protein phosphodiesterase;
           Provisional.
          Length = 193

 Score = 27.1 bits (60), Expect = 3.6
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 42  HLRICPTLPDPPPR 55
             ++   LPD PPR
Sbjct: 106 REQVMTILPDSPPR 119



 Score = 27.1 bits (60), Expect = 3.6
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 108 HLRICPTLPDPPPR 121
             ++   LPD PPR
Sbjct: 106 REQVMTILPDSPPR 119


>gnl|CDD|143313 cd07689, Ig2_VCAM-1, Second immunoglobulin (Ig)-like domain of
           vascular endothelial cell adhesion molecule-1 (VCAM-1,
           CD106) and intercellular cell adhesion molecule-1
           (ICAM-1, CD54) and similar proteins.  Ig2_ VCAM-1_like:
           domain similar to the second immunoglobulin (Ig)-like
           domain of vascular endothelial cell adhesion molecule-1
           (VCAM-1, CD106). During the inflammation process, these
           molecules recruit leukocytes onto the vascular
           endothelium before extravasation to the injured tissues.
           The interaction of VCAM-1 binding to the beta1 integrin
           very late antigen (VLA-4) expressed by lymphocytes and
           monocytes mediates the adhesion of leucocytes to blood
           vessel walls, and regulates migration across the
           endothelium. During metastasis, some circulating cancer
           cells extravasate to a secondary site by a similar
           process.  VCAM-1 may be involved in organ targeted tumor
           metastasis and may also act as host receptors for
           viruses and parasites.  VCAM-1 contains seven Ig
           domains.
          Length = 99

 Score = 26.4 bits (58), Expect = 4.4
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 139 EHGKTTPDTSSVEIQHSLNPESDQTKFSAPAALHI 173
           +  K + +T S+E+  +   E         A LHI
Sbjct: 52  DMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHI 86


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.137    0.472 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,159,046
Number of extensions: 671027
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 14
Length of query: 173
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 83
Effective length of database: 6,945,742
Effective search space: 576496586
Effective search space used: 576496586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)