RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13567
         (173 letters)



>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two
           SUB-domain architecture, beta-sheet, structural protein;
           NMR {Homo sapiens} SCOP: g.27.1.2
          Length = 73

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 68  PQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVH 127
            +      C+  G +Y +   V   E C  C C  G+++C   IC  + D          
Sbjct: 2   VEFQEAGSCVQDGQRYNDK-DVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSP----EI 56

Query: 128 KAQKCCP 134
              +CCP
Sbjct: 57  PFGECCP 63



 Score = 32.6 bits (74), Expect = 0.010
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 9  TCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCP 68
          +C+  G +Y +   V   E C  C C  G+++C   IC  + D             +CCP
Sbjct: 9  SCVQDGQRYNDK-DVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSP----EIPFGECCP 63


>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon
           degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
           reductase family; HET: MES MGD MD1 HEM; 1.88A
           {Aromatoleum aromaticum}
          Length = 976

 Score = 28.2 bits (62), Expect = 1.6
 Identities = 7/47 (14%), Positives = 9/47 (19%), Gaps = 16/47 (34%)

Query: 28  HCLNCSCTRG-SLVCHLR---------------ICPTLPDPPPRGCL 58
           H   C          ++R                     D  P GC 
Sbjct: 82  HLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQ 128



 Score = 28.2 bits (62), Expect = 1.6
 Identities = 7/47 (14%), Positives = 9/47 (19%), Gaps = 16/47 (34%)

Query: 94  HCLNCSCTRG-SLVCHLR---------------ICPTLPDPPPRGCL 124
           H   C          ++R                     D  P GC 
Sbjct: 82  HLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQ 128


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.137    0.472 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,623,944
Number of extensions: 151343
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 98
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)