RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13567
(173 letters)
>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 35.3 bits (81), Expect = 3e-04
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 75 GCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCP 134
C+ G +Y + V E C C C G+++C IC + D +CCP
Sbjct: 9 SCVQDGQRYNDK-DVWKPEPCRICVCDTGTVLCDDIICEDVKDCLS----PEIPFGECCP 63
Query: 135 Q 135
Sbjct: 64 I 64
Score = 34.2 bits (78), Expect = 9e-04
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 9 TCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCP 68
+C+ G +Y + V E C C C G+++C IC + D +CCP
Sbjct: 9 SCVQDGQRYNDK-DVWKPEPCRICVCDTGTVLCDDIICEDVKDCLS----PEIPFGECCP 63
Query: 69 Q 69
Sbjct: 64 I 64
>d2g9hd1 b.40.2.2 (D:4-86) Enterotoxin type I, SEI {Staphylococcus
aureus [TaxId: 1280]}
Length = 83
Score = 25.1 bits (55), Expect = 1.8
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 72 CEHGCMYGGV 81
C+ MYGG
Sbjct: 70 CKSKYMYGGA 79
>d2aq2b1 b.40.2.2 (B:2-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 118
Score = 24.8 bits (54), Expect = 3.3
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 2 KESSKYLTCMYGGVQYEEG 20
TCMYGG+ EG
Sbjct: 99 NVWWPGKTCMYGGITKHEG 117
>d1bxta1 b.40.2.2 (A:1-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 119
Score = 24.8 bits (54), Expect = 4.4
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 9 TCMYGGVQYEEG 20
TCMYGGV
Sbjct: 107 TCMYGGVTEHHR 118
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 24.8 bits (53), Expect = 4.5
Identities = 10/64 (15%), Positives = 14/64 (21%)
Query: 51 DPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLR 110
P G ++VH + G E N +L L
Sbjct: 25 REVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLE 84
Query: 111 ICPT 114
C
Sbjct: 85 PCVM 88
>d1esfa1 b.40.2.2 (A:1-120) Staphylococcal enterotoxin A, SEA
{Staphylococcus aureus [TaxId: 1280]}
Length = 120
Score = 24.8 bits (54), Expect = 4.5
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 9 TCMYGGVQYEEG 20
CMYGGV +
Sbjct: 105 ACMYGGVTLHDN 116
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
coli [TaxId: 562]}
Length = 431
Score = 25.0 bits (54), Expect = 5.1
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 55 RGCLIVHKAQKCCPQLVCEHGCMYGGVQYE----EGMTVPTEEHCLNCSCTRGSLVCHLR 110
+ H AQK P V + G+ +P L + + +
Sbjct: 90 KNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIA 149
Query: 111 ICP-TLPDPPPRGCLIVHKAQKCCP 134
C + PP + A + C
Sbjct: 150 GCKKVVLCSPPPIADEILYAAQLCG 174
Score = 25.0 bits (54), Expect = 5.2
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 20 GMTVPTEEHCLNCSCTRGSLVCHLRICP-TLPDPPPRGCLIVHKAQKCCPQLVCEHGCMY 78
G+ +P L + + + C + PP + A + C +
Sbjct: 125 GLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEILYAAQLCGV---QDVFNV 181
Query: 79 GGVQYEEGMTVPTEEHC 95
GG Q + TE
Sbjct: 182 GGAQAIAALAFGTESVP 198
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 24.7 bits (53), Expect = 5.9
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 61 HKAQKCCPQLVCEHGCMYGGVQYEEGMTV 89
A PQ+ G GG Y +T
Sbjct: 153 TLASGVVPQITVIAGPCAGGAVYSPALTD 181
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 25.1 bits (53), Expect = 6.6
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 40 VCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLN 97
V ++R P P G C Q V E + G + E CL
Sbjct: 37 VGNMRFRRPEPKKPWSGVWNASTYPNNCQQYVDEQFPGFSGSEMWNP-NREMSEDCLY 93
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId:
1049]}
Length = 80
Score = 23.6 bits (50), Expect = 6.8
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 64 QKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPT 114
+C VCE C G + + V C C + C + +CP
Sbjct: 6 DECINCDVCEPECPNGAISQGDETYVIEPSLCTECVGHYETSQC-VEVCPV 55
>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 418
Score = 24.3 bits (52), Expect = 9.1
Identities = 17/103 (16%), Positives = 25/103 (24%), Gaps = 12/103 (11%)
Query: 21 MTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGG 80
+ L+ + G L IC D G LI + P L G M G
Sbjct: 131 VIAMATAVGLSHNMFDG--ALLLGIC----DKIVPGLLIGALSFGHLPMLFVPAGPMKSG 184
Query: 81 VQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGC 123
+ +E + + L C
Sbjct: 185 IPNKEKARIRQQFAQGKVDR------AQLLEAEAQSYHSAGTC 221
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.472
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 681,713
Number of extensions: 33647
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 47
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)