BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13568
(485 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q63486|RRAGA_RAT Ras-related GTP-binding protein A OS=Rattus norvegicus GN=Rraga
PE=1 SV=1
Length = 313
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/213 (64%), Positives = 160/213 (75%), Gaps = 32/213 (15%)
Query: 31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct: 43 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102
Query: 91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct: 103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRT 162
Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
AWSSIVYQLIPNV++LE +L FA +++ DEVLLFERATFLVISH Q KE
Sbjct: 163 SIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQ 222
Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
RD+HRFEKISNIIKQFKLSC + + F R
Sbjct: 223 RDVHRFEKISNIIKQFKLSCSKLAASFQSMEVR 255
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 1 MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
MEVRNS FAAFID FTSNT+VMVV+SDP+I
Sbjct: 252 MEVRNSNFAAFIDIFTSNTYVMVVMSDPSI 281
>sp|Q80X95|RRAGA_MOUSE Ras-related GTP-binding protein A OS=Mus musculus GN=Rraga PE=2
SV=1
Length = 313
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/213 (64%), Positives = 160/213 (75%), Gaps = 32/213 (15%)
Query: 31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct: 43 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102
Query: 91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct: 103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRT 162
Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
AWSSIVYQLIPNV++LE +L FA +++ DEVLLFERATFLVISH Q KE
Sbjct: 163 SIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQ 222
Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
RD+HRFEKISNIIKQFKLSC + + F R
Sbjct: 223 RDVHRFEKISNIIKQFKLSCSKLAASFQSMEVR 255
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 1 MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
MEVRNS FAAFID FTSNT+VMVV+SDP+I
Sbjct: 252 MEVRNSNFAAFIDIFTSNTYVMVVMSDPSI 281
>sp|Q7L523|RRAGA_HUMAN Ras-related GTP-binding protein A OS=Homo sapiens GN=RRAGA PE=1
SV=1
Length = 313
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/213 (64%), Positives = 160/213 (75%), Gaps = 32/213 (15%)
Query: 31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct: 43 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102
Query: 91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct: 103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRT 162
Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
AWSSIVYQLIPNV++LE +L FA +++ DEVLLFERATFLVISH Q KE
Sbjct: 163 SIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQ 222
Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
RD+HRFEKISNIIKQFKLSC + + F R
Sbjct: 223 RDVHRFEKISNIIKQFKLSCSKLAASFQSMEVR 255
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 1 MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
MEVRNS FAAFID FTSNT+VMVV+SDP+I
Sbjct: 252 MEVRNSNFAAFIDIFTSNTYVMVVMSDPSI 281
>sp|Q3SX43|RRAGA_BOVIN Ras-related GTP-binding protein A OS=Bos taurus GN=RRAGA PE=2 SV=1
Length = 313
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/213 (64%), Positives = 160/213 (75%), Gaps = 32/213 (15%)
Query: 31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct: 43 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102
Query: 91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct: 103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRT 162
Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
AWSSIVYQLIPNV++LE +L FA +++ DEVLLFERATFLVISH Q KE
Sbjct: 163 SIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQ 222
Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
RD+HRFEKISNIIKQFKLSC + + F R
Sbjct: 223 RDVHRFEKISNIIKQFKLSCSKLAASFQSMEVR 255
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 1 MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
MEVRNS FAAFID FTSNT+VMVV+SDP+I
Sbjct: 252 MEVRNSNFAAFIDIFTSNTYVMVVMSDPSI 281
>sp|Q5VZM2|RRAGB_HUMAN Ras-related GTP-binding protein B OS=Homo sapiens GN=RRAGB PE=1
SV=1
Length = 374
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 138/219 (63%), Positives = 160/219 (73%), Gaps = 32/219 (14%)
Query: 25 ISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVES 84
+ + +VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVES
Sbjct: 98 VGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVES 157
Query: 85 RELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------- 127
REL++D+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct: 158 RELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLE 217
Query: 128 ---------------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISH 172
AWSSIVYQLIPNV++LE +L FA +++ DEVLLFERATFLVISH
Sbjct: 218 CSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISH 277
Query: 173 CQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
Q KE RD HRFEKISNIIKQFKLSC + + F R
Sbjct: 278 YQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVR 316
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 1 MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
MEVRNS FAAFID FTSNT+VMVV+SDP+I
Sbjct: 313 MEVRNSNFAAFIDIFTSNTYVMVVMSDPSI 342
>sp|Q63487|RRAGB_RAT Ras-related GTP-binding protein B OS=Rattus norvegicus GN=RragB
PE=1 SV=1
Length = 374
Score = 281 bits (719), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 137/219 (62%), Positives = 160/219 (73%), Gaps = 32/219 (14%)
Query: 25 ISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVES 84
+ + +VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVES
Sbjct: 98 VGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVES 157
Query: 85 RELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------- 127
REL++D+HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD+
Sbjct: 158 RELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLE 217
Query: 128 ---------------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISH 172
AWSSIVYQLIPNV++LE +L FA +++ DEVLLFERATFLVISH
Sbjct: 218 CSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISH 277
Query: 173 CQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
Q KE RD HRFEKISNIIKQFKLSC + + F R
Sbjct: 278 YQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVR 316
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 1 MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
MEVRNS FAAFID FTSNT+VMVV+SDP+I
Sbjct: 313 MEVRNSNFAAFIDIFTSNTYVMVVMSDPSI 342
>sp|Q6NTA4|RRAGB_MOUSE Ras-related GTP-binding protein B OS=Mus musculus GN=Rragb PE=2
SV=1
Length = 374
Score = 281 bits (719), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 137/219 (62%), Positives = 160/219 (73%), Gaps = 32/219 (14%)
Query: 25 ISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVES 84
+ + +VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVES
Sbjct: 98 VGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVES 157
Query: 85 RELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------- 127
REL++D+HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD+
Sbjct: 158 RELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLE 217
Query: 128 ---------------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISH 172
AWSSIVYQLIPNV++LE +L FA +++ DEVLLFERATFLVISH
Sbjct: 218 CSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISH 277
Query: 173 CQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
Q KE RD HRFEKISNIIKQFKLSC + + F R
Sbjct: 278 YQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVR 316
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 1 MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
MEVRNS FAAFID FTSNT+VMVV+SDP+I
Sbjct: 313 MEVRNSNFAAFIDIFTSNTYVMVVMSDPSI 342
>sp|Q54IK1|RRAGA_DICDI Ras-related GTP-binding protein A OS=Dictyostelium discoideum
GN=ragA PE=2 SV=1
Length = 301
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 142/200 (71%), Gaps = 32/200 (16%)
Query: 31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
++VEHSHVRFLGNLVLNLWDCGGQE F+E+Y T+QRD+IFRNV VLIYVFD+ESRE +D
Sbjct: 38 IDVEHSHVRFLGNLVLNLWDCGGQEGFLESYLTTQRDHIFRNVEVLIYVFDIESREHQKD 97
Query: 91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
+ Y+SC+EA+ NS D+K+FCLIHK+DLV E+QRD
Sbjct: 98 IKNYKSCIEAISQNSKDAKIFCLIHKMDLVPEDQRDTLFKNKEQEIRQASLPLKPTCFRT 157
Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
AWSSIVY LIPNVK LE +L F + + DEV+LFE+ATFLVISH RK H
Sbjct: 158 SIWDETLYKAWSSIVYSLIPNVKVLEYNLDKFCKICEADEVVLFEKATFLVISHSARKVH 217
Query: 179 RDIHRFEKISNIIKQFKLSC 198
+D+HRFEKIS IIKQF LSC
Sbjct: 218 KDVHRFEKISTIIKQFFLSC 237
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 1 MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
MEVRNS FAAFID FTSNT++MV++SDP I
Sbjct: 247 MEVRNSNFAAFIDAFTSNTYIMVIMSDPTI 276
>sp|O74824|GTR1_SCHPO GTP-binding protein gtr1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=gtr1 PE=3 SV=1
Length = 308
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/210 (55%), Positives = 139/210 (66%), Gaps = 34/210 (16%)
Query: 31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
+++EHSHVRFLGNLVLNLWDCGGQEAFMENY ++QRD+IFRNV VLIYVFDVESRE +RD
Sbjct: 38 IDIEHSHVRFLGNLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERD 97
Query: 91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
L +++CLEA + NSP ++VFCLIHK+DLV E+ RD+
Sbjct: 98 LVTFRNCLEATVANSPQARVFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETTCLAT 157
Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVIS--HCQRK 176
AWS+IVY LIPN LE L FA + EV+LFER TFLVIS +
Sbjct: 158 SIWDETLFKAWSAIVYTLIPNTPTLESHLREFAKAAEAAEVILFERTTFLVISSYSSESN 217
Query: 177 EHRDIHRFEKISNIIKQFKLSCRLVYSLFN 206
D HRFEKISNI+KQFKLSC + + F
Sbjct: 218 PATDAHRFEKISNIVKQFKLSCSKMQAQFT 247
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 2 EVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
E+R F+AFI +T +T+++VVI+DP I
Sbjct: 250 ELRGGNFSAFIVPYTEDTYILVVIADPEI 278
>sp|Q00582|GTR1_YEAST GTP-binding protein GTR1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GTR1 PE=1 SV=1
Length = 310
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 126/223 (56%), Gaps = 48/223 (21%)
Query: 31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
++VEHSH+RFLGN+ LNLWDCGGQ+ FMENYFT Q+D+IF+ V VLI+VFDVES E+ +D
Sbjct: 42 IDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKD 101
Query: 91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD------------------------ 126
+ + L+ + SPD+K+F L+HK+DLV ++R+
Sbjct: 102 IEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 161
Query: 127 -----------VAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQR 175
AWS IV LIPN+ + +L F +M+ E++LFER TFLVI
Sbjct: 162 FPTSIWDESLYKAWSQIVCSLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNG 221
Query: 176 KEHRDIH-------------RFEKISNIIKQFKLSCRLVYSLF 205
+ + H RFEKISNI+K FK SC + S F
Sbjct: 222 ENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCTKLKSGF 264
>sp|Q9HB90|RRAGC_HUMAN Ras-related GTP-binding protein C OS=Homo sapiens GN=RRAGC PE=1
SV=1
Length = 399
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 40/162 (24%)
Query: 47 NLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSP 106
+WD GQ F + F + IFR LIYV D + ++ + + +A N P
Sbjct: 113 QIWDFPGQMDFFDPTFDYEM--IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-P 169
Query: 107 DSKVFCLIHKIDLVH-----ENQRDV--------------------------------AW 129
D IHK+D + E QRD+ A+
Sbjct: 170 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAF 229
Query: 130 SSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVIS 171
S +V +LIP + LE L++F + ++ LF+ + + I+
Sbjct: 230 SKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 271
>sp|Q99K70|RRAGC_MOUSE Ras-related GTP-binding protein C OS=Mus musculus GN=Rragc PE=2
SV=1
Length = 398
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 40/162 (24%)
Query: 47 NLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSP 106
+WD GQ F + F + IFR LIYV D + ++ + + +A N P
Sbjct: 112 QIWDFPGQMDFFDPTFDYEM--IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-P 168
Query: 107 DSKVFCLIHKIDLVH-----ENQRDV--------------------------------AW 129
D IHK+D + E QRD+ A+
Sbjct: 169 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAF 228
Query: 130 SSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVIS 171
S +V +LIP + LE L++F + ++ LF+ + + I+
Sbjct: 229 SKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 270
>sp|Q54R04|ARL8_DICDI ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum
GN=arl8 PE=3 SV=1
Length = 185
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 14 EFTSNTFVMVVISDPNILEVEHSHVRF------LGNLVLNLWDCGGQEAFMENYFTSQRD 67
+ + T ++ VIS+ +E + F GN+ + LWD GGQ F S +
Sbjct: 28 QGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQP-----RFRSMWE 82
Query: 68 NIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
R V +++V D RE + L+ +++ P +K+ LV N+ D+
Sbjct: 83 RYCRGVNAIVFVVDSADRE---KFEQSKQALQDLINKPPLAKIPL------LVVANKNDL 133
Query: 128 AWSSIVYQLIPN 139
S+ V ++I N
Sbjct: 134 PNSAGVDEMIQN 145
>sp|P51152|RAB12_CANFA Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12
PE=2 SV=1
Length = 208
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 4 RNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYF 62
R + ++ FT +TF S + + + V G + L +WD GQE F N
Sbjct: 15 RGVGKTSLMERFTDDTFCEACKSTVGV-DFKIKTVELRGKKIRLQIWDTAGQERF--NSI 71
Query: 63 TSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHE 122
TS +R+ +I V+D+ +E DL + ++ + S D+++ + +K+D E
Sbjct: 72 TSA---YYRSAKGIILVYDITKKETFDDLPKWMKMIDK--YASEDAELLLVGNKLDC--E 124
Query: 123 NQRDVA 128
R++
Sbjct: 125 TDREIT 130
>sp|Q8BHC1|RB39B_MOUSE Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1
Length = 213
Score = 35.8 bits (81), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 25/129 (19%)
Query: 9 AAFIDEFTSNTFVMVVISDPNI--------LEVEHSHVRFLGNLVLNLWDCGGQEAFMEN 60
+ I FT F V SDP + +E+E + L +WD GQE F
Sbjct: 22 SCLIRRFTEGRFAQV--SDPTVGVDFFSRLVEIEPGK-----RIKLQIWDTAGQERFR-- 72
Query: 61 YFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLI-HKIDL 119
S +RN + +FD+ +R +++H + E +H P VF L+ HK DL
Sbjct: 73 ---SITRAYYRNSVGGLLLFDITNRRSFQNVHEWLE--ETKVHVQPYQIVFVLVGHKCDL 127
Query: 120 VHENQRDVA 128
+ QR V
Sbjct: 128 --DTQRQVT 134
>sp|Q96DA2|RB39B_HUMAN Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1
Length = 213
Score = 35.8 bits (81), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 25/129 (19%)
Query: 9 AAFIDEFTSNTFVMVVISDPNI--------LEVEHSHVRFLGNLVLNLWDCGGQEAFMEN 60
+ I FT F V SDP + +E+E + L +WD GQE F
Sbjct: 22 SCLIRRFTEGRFAQV--SDPTVGVDFFSRLVEIEPGK-----RIKLQIWDTAGQERFR-- 72
Query: 61 YFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLI-HKIDL 119
S +RN + +FD+ +R +++H + E +H P VF L+ HK DL
Sbjct: 73 ---SITRAYYRNSVGGLLLFDITNRRSFQNVHEWLE--ETKVHVQPYQIVFVLVGHKCDL 127
Query: 120 VHENQRDVA 128
+ QR V
Sbjct: 128 --DTQRQVT 134
>sp|Q17QU4|RB39B_BOVIN Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1
Length = 213
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 25/129 (19%)
Query: 9 AAFIDEFTSNTFVMVVISDPNI--------LEVEHSHVRFLGNLVLNLWDCGGQEAFMEN 60
+ I FT F V SDP + +E+E + L +WD GQE F
Sbjct: 22 SCLIRRFTEGRFAQV--SDPTVGVDFFSRLVEIEPGK-----RIKLQIWDTAGQERFR-- 72
Query: 61 YFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLI-HKIDL 119
S +RN + +FD+ +R +++H + E +H P VF L+ HK DL
Sbjct: 73 ---SITRAYYRNSVGGLLLFDITNRRSFQNVHEWLE--ETKVHVQPYQIVFVLVGHKCDL 127
Query: 120 VHENQRDVA 128
+ QR V
Sbjct: 128 --DTQRQVT 134
>sp|Q1ZXD6|ROCO5_DICDI Probable serine/threonine-protein kinase roco5 OS=Dictyostelium
discoideum GN=roco5 PE=3 SV=1
Length = 2800
Score = 35.4 bits (80), Expect = 1.1, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 44 LVLNLWDCGGQEAF--MENYFTSQRDNIFRNVAVLIYVFDVESRELDRD--LHYYQSCLE 99
+ ++WD GQE + +F S R +V I VFD+ D + Y+ C+E
Sbjct: 1342 VTFSIWDFAGQEVYYSTHQFFISSR-------SVFIVVFDMSVYNPDETSRVPYWLQCIE 1394
Query: 100 AMLHNSPDSKVFCLIHKIDL---VHENQRDVAWSSIVYQLIPNVK 141
A NSP + H DL V NQ S + PNVK
Sbjct: 1395 AFGGNSP--VILVGTHLDDLPNGVDVNQITQDIHSKYFTKFPNVK 1437
>sp|Q6IQ22|RAB12_HUMAN Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=1 SV=3
Length = 244
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 4 RNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYF 62
R + ++ FT +TF S + + + V G + L +WD GQE F N
Sbjct: 51 RGVGKTSLMERFTDDTFCEACKSTVGV-DFKIKTVELRGKKIRLQIWDTAGQERF--NSI 107
Query: 63 TSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHE 122
TS +R+ +I V+D+ +E DL + ++ + S D+++ + +K+D E
Sbjct: 108 TSA---YYRSAKGIILVYDITKKETFDDLPKWMKMIDK--YASEDAELLLVGNKLDC--E 160
Query: 123 NQRDVA 128
R++
Sbjct: 161 TDREIT 166
>sp|P35283|RAB12_MOUSE Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3
Length = 243
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 4 RNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYF 62
R + ++ FT +TF S + + + V G + L +WD GQE F N
Sbjct: 50 RGVGKTSLMERFTDDTFCEACKSTVGV-DFKIKTVELRGKKIRLQIWDTAGQERF--NSI 106
Query: 63 TSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHE 122
TS +R+ +I V+D+ +E DL + ++ + S D+++ + +K+D E
Sbjct: 107 TSA---YYRSAKGIILVYDITKKETFDDLPKWMKMIDK--YASEDAELLLVGNKLDC--E 159
Query: 123 NQRDVA 128
R+++
Sbjct: 160 TDREIS 165
>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1
Length = 213
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLE-AM 101
+ L +WD GQE+F S + +R A + V+D+ RE ++ S LE A
Sbjct: 54 QIKLQIWDTAGQESFR-----SITRSYYRGAAGALLVYDITRRET---FNHLASWLEDAR 105
Query: 102 LHNSPDSKVFCLIHKIDLVH 121
H +P+ + + +K DL H
Sbjct: 106 QHANPNMTIMLIGNKCDLTH 125
>sp|Q38922|RAB1B_ARATH Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2
SV=1
Length = 211
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 44 LVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLE-AML 102
+ L +WD GQE+F S + +R A + V+D+ RE ++ S LE A
Sbjct: 55 IKLQIWDTAGQESFR-----SITRSYYRGAAGALLVYDITRRET---FNHLASWLEDARQ 106
Query: 103 HNSPDSKVFCLIHKIDLVHE 122
H +P+ + + +K DL H+
Sbjct: 107 HANPNMSIMLIGNKCDLAHK 126
>sp|P35284|RAB12_RAT Ras-related protein Rab-12 OS=Rattus norvegicus GN=Rab12 PE=1 SV=2
Length = 243
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 4 RNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYF 62
R + ++ FT +TF S + + + V G + L +WD GQE F N
Sbjct: 50 RGVGKTSLMERFTDDTFCEACKSTVGV-DFKIKTVELRGKKIRLQIWDTAGQERF--NSI 106
Query: 63 TSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHE 122
TS +R+ +I V+D+ +E DL + ++ + S D+++ + +K+D E
Sbjct: 107 TSA---YYRSAKGIILVYDITKKETFDDLPKWMKMIDK--YASEDAELLLVGNKLDC--E 159
Query: 123 NQRDVA 128
R+++
Sbjct: 160 TDREIS 165
>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4
PE=3 SV=1
Length = 213
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLE-AM 101
+ L +WD GQE+F S + +R A + V+D+ RE ++ S LE A
Sbjct: 54 QIKLQIWDTAGQESFR-----SITRSYYRGAAGALLVYDITRRET---FNHLASWLEDAR 105
Query: 102 LHNSPDSKVFCLIHKIDLVH 121
H +P+ + + +K DL H
Sbjct: 106 QHANPNMTIMLIGNKCDLTH 125
>sp|O13876|YPT4_SCHPO GTP-binding protein ypt4 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt4 PE=3 SV=1
Length = 234
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 41 LGN----LVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQS 96
+GN + L +WD GQE F S N +R A + V+DV +++ +L + S
Sbjct: 55 MGNQQKRIKLQIWDTAGQEKFR-----SVARNYYRGAAGAVLVYDVTNKDSFEELSSWLS 109
Query: 97 CLEAMLHNSPDSKVFCLI---HKIDLVHENQRDVA 128
+ AM ++ C++ K DL +NQR V+
Sbjct: 110 DIRAMAPST-----ICVVLAGSKSDL--QNQRQVS 137
>sp|Q0SNY5|MNME_BORAP tRNA modification GTPase MnmE OS=Borrelia afzelii (strain PKo)
GN=mnmE PE=3 SV=1
Length = 464
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 41 LGNLVLNLWDCGG---QEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSC 97
L ++ NL+D G + F+E + +++ + +++IYV D+ S DL + S
Sbjct: 267 LDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEASLVIYVIDISSNLTRDDLLFIDS- 325
Query: 98 LEAMLHNSPDSKVFCLIHKIDL-VHENQRDVAWSSIVYQ---LIPNVKELEQ 145
N +SK+ +++KIDL ++++ + SS++ ++ ++K LE
Sbjct: 326 ------NKSNSKILFVLNKIDLKINKSTEEFVRSSVLNSSNLIMISIKNLEG 371
>sp|Q5S007|LRRK2_HUMAN Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens
GN=LRRK2 PE=1 SV=2
Length = 2527
Score = 33.1 bits (74), Expect = 4.6, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 43 NLVLNLWDCGGQEAFMEN--YFTSQRDNIFRNVAVLIYVFDVESRELDRD-LHYYQSCLE 99
+LVLN+WD G+E F +F +QR A+ + V+D+ + + D + + ++
Sbjct: 1387 DLVLNVWDFAGREEFYSTHPHFMTQR-------ALYLAVYDLSKGQAEVDAMKPWLFNIK 1439
Query: 100 AMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLI 137
A +SP V + +D+ E QR S I +L+
Sbjct: 1440 ARASSSP---VILVGTHLDVSDEKQRKACMSKITKELL 1474
>sp|Q8BHD0|RB39A_MOUSE Ras-related protein Rab-39A OS=Mus musculus GN=Rab39a PE=2 SV=1
Length = 217
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 30 ILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDR 89
+LE+E + L LWD GQE F S + +RN VFD+ +R R
Sbjct: 53 LLEIEPGK-----RIKLQLWDTAGQE-----RFRSITRSYYRNSVGGFLVFDITNR---R 99
Query: 90 DLHYYQSCL-EAMLHNSPDSKVFCLI-HKIDLVHENQ 124
+ + L EA +H P VF L+ HK DL + Q
Sbjct: 100 SFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQRQ 136
>sp|Q54DA7|RAB4_DICDI Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3
SV=1
Length = 205
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAML 102
N+ L +WD GQE F + +R A + V+DV +RE + + S ++++
Sbjct: 55 NVKLQIWDTAGQERFRSVVIS-----YYRGSAGVALVYDVTNRESYNHITNWLSDVKSLA 109
Query: 103 HNSPDSKVFCLIHKIDLVHENQRDVA 128
SPD + + +K DL QR+V
Sbjct: 110 --SPDVTIILVGNKADLTE--QREVT 131
>sp|Q2KI07|ARL8B_BOVIN ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2
SV=1
Length = 186
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE 86
GN+ + +WD GGQ F S + R V ++Y+ D RE
Sbjct: 63 GNVTIKIWDIGGQP-----RFQSMWERYCRGVNAIVYMIDAADRE 102
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2
SV=1
Length = 216
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|O45379|ARL3_CAEEL ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans
GN=arl-3 PE=1 SV=1
Length = 184
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 38 VRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD 81
V +G++ LN+WD GGQ + + Y++ N + N+ LI+V D
Sbjct: 56 VAAMGDIRLNVWDIGGQRS-IRPYWS----NYYENIDTLIFVID 94
>sp|P62828|RAN_RAT GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1
SV=3
Length = 216
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|Q5R556|RAN_PONAB GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3
Length = 216
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3
Length = 216
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|Q4R4M9|RAN_MACFA GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2
SV=3
Length = 216
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3
Length = 216
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1
SV=3
Length = 216
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|Q3T054|RAN_BOVIN GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3
Length = 216
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|Q5ZKQ8|ARL8A_CHICK ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A
PE=2 SV=1
Length = 186
Score = 32.7 bits (73), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE 86
GN+ + LWD GGQ F S + R V+ ++Y+ D +E
Sbjct: 63 GNVTIKLWDIGGQP-----RFRSMWERYCRGVSAIVYMVDAADQE 102
>sp|B5RQZ8|MNME_BORRA tRNA modification GTPase MnmE OS=Borrelia recurrentis (strain A1)
GN=mnmE PE=3 SV=1
Length = 464
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 43 NLVLNLWDCGG---QEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLE 99
++ N++D G F+E + +++ + +++ YV D+ + D DL + + E
Sbjct: 269 GILFNVFDTAGLRETSDFVEQLGIVRSNSLIKEASLIFYVVDLSGKLTDDDLKFIDAYKE 328
Query: 100 AMLHNSPDSKVFCLIHKIDLVHENQ 124
DS+V +++K+DL NQ
Sbjct: 329 -------DSRVLFVLNKVDLEQNNQ 346
>sp|Q96BM9|ARL8A_HUMAN ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A
PE=1 SV=1
Length = 186
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE 86
GN+ + LWD GGQ F S + R V+ ++Y+ D +E
Sbjct: 63 GNVTIKLWDIGGQP-----RFRSMWERYCRGVSAIVYMVDAADQE 102
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1
Length = 216
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2
SV=1
Length = 215
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 56 GPIKYNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 110
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 111 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 137
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2
Length = 216
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAM 101
G + N+WD GQE F RD + I +FDV SR +++ + L +
Sbjct: 57 GPIKFNVWDTAGQEK-----FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 102 LHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
N P V C +K+D+ R V SIV+
Sbjct: 112 CENIP--IVLCG-NKVDI---KDRKVKAKSIVF 138
>sp|Q8VEH3|ARL8A_MOUSE ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a
PE=2 SV=1
Length = 186
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE 86
GN+ + LWD GGQ F S + R V+ ++Y+ D +E
Sbjct: 63 GNVTIKLWDIGGQP-----RFRSMWERYCRGVSAIVYMVDAADQE 102
>sp|B5RL05|MNME_BORDL tRNA modification GTPase MnmE OS=Borrelia duttonii (strain Ly)
GN=mnmE PE=3 SV=1
Length = 464
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 43 NLVLNLWDCGG---QEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLE 99
++ N++D G F+E + +++ + +++ YV D+ + D DL + + E
Sbjct: 269 GILFNVFDTAGLRETSDFVEQLGIVRSNSLIKEASLIFYVVDLSGKLTDDDLKFIDAYKE 328
Query: 100 AMLHNSPDSKVFCLIHKIDLVHENQ 124
DS+V +++K+DL NQ
Sbjct: 329 -------DSRVLFVLNKVDLEQNNQ 346
>sp|Q66HA6|ARL8B_RAT ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus
GN=Arl8b PE=2 SV=1
Length = 186
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE 86
GN+ + +WD GGQ F S + R V ++Y+ D RE
Sbjct: 63 GNVTIKIWDIGGQP-----RFRSMWERYCRGVNAIVYMIDAADRE 102
>sp|Q9CQW2|ARL8B_MOUSE ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b
PE=2 SV=1
Length = 186
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE 86
GN+ + +WD GGQ F S + R V ++Y+ D RE
Sbjct: 63 GNVTIKIWDIGGQP-----RFRSMWERYCRGVNAIVYMIDAADRE 102
>sp|Q9NVJ2|ARL8B_HUMAN ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B
PE=1 SV=1
Length = 186
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE 86
GN+ + +WD GGQ F S + R V ++Y+ D RE
Sbjct: 63 GNVTIKIWDIGGQP-----RFRSMWERYCRGVNAIVYMIDAADRE 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.336 0.147 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,985,236
Number of Sequences: 539616
Number of extensions: 8057090
Number of successful extensions: 22018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 21919
Number of HSP's gapped (non-prelim): 129
length of query: 485
length of database: 191,569,459
effective HSP length: 121
effective length of query: 364
effective length of database: 126,275,923
effective search space: 45964435972
effective search space used: 45964435972
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 63 (28.9 bits)