RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13568
(485 letters)
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 167 bits (424), Expect = 4e-48
Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 48/215 (22%)
Query: 33 VEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLH 92
VEHSH+RFLGN+ LNLWDCGGQ+ FMENYFT Q+D+IF+ V VLI+VFDVES E+ +D+
Sbjct: 41 VEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE 100
Query: 93 YYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD-------------------------- 126
+ L+ + SPD+K+F L+HK+DLV ++R+
Sbjct: 101 IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160
Query: 127 ---------VAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKE 177
AWS IV LIPN+ + +L F +M+ E++LFER TFLVI +
Sbjct: 161 TSIWDESLYKAWSQIVCSLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNGEN 220
Query: 178 HRDIH-------------RFEKISNIIKQFKLSCR 199
+ H RFEKISNI+K FK SC
Sbjct: 221 SNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCT 255
Score = 31.5 bits (71), Expect = 0.56
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1 MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
+ + N+ ++ E +SN +V+ D NI
Sbjct: 264 LILNNN---IYVSELSSNMVCFIVLKDMNI 290
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 146 bits (370), Expect = 3e-40
Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 44/202 (21%)
Query: 31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
H L +L + + GQ + E + S+R +F++V L+YV D + ++
Sbjct: 35 SNPSLEHFSTLIDL--AVMELPGQLNYFEPSYDSER--LFKSVGALVYVIDSQDEYIN-A 89
Query: 91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLV-----HENQRDV------------------ 127
+ +E +P + LIHK+D + + QRD+
Sbjct: 90 ITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149
Query: 128 --------------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHC 173
A+S IV +LIP + LE L ++ LF+ + + +S
Sbjct: 150 SFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKIEKAFLFDVNSKIYVSTD 209
Query: 174 QRKEHRDIHRFEKISNIIKQFK 195
DI +E S I
Sbjct: 210 SN--PVDIQMYEVCSEFIDVTI 229
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 93.9 bits (233), Expect = 2e-22
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
++ + + +WD GQ F + F + IFR LIYV D + ++
Sbjct: 56 NKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF--DYEMIFRGTGALIYVIDAQDDYME-A 112
Query: 91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQL 136
L + +PD IHK+D + ++ + I +
Sbjct: 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA 158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 9e-05
Identities = 77/500 (15%), Positives = 151/500 (30%), Gaps = 108/500 (21%)
Query: 54 QEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCL 113
Q + M + QRD ++ + V ++V + L +A+L P V
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLR------QALLELRPAKNVL-- 154
Query: 114 IH------KIDLVHENQRD----------VAWSSIVYQLIPNVKELEQSLHLFATLMDGD 157
I K + + + W ++ P LE L +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDPNW 213
Query: 158 EVLLFERATFLVISHCQRKEHRDI---HRFEK---------ISNIIKQFKLSCRLVYSLF 205
+ + H + E R + +E + F LSC+++ +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 206 NRDHFRLVYSLFNRDHFRLVYSL--FNRDHFRLVYSLF-----------NRDHFRLVYSL 252
+ + S H L + D + + + S+
Sbjct: 274 FKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 253 F--------NR-DHFRLVYSLFNRDHFRLVYSLF--------NRDHFRLVYSLFNRDH-- 293
D+++ V N D + R F + S+F
Sbjct: 333 IAESIRDGLATWDNWKHV----NCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHI 387
Query: 294 -FRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRD 352
L+ ++ V + N+ H YSL + S+ + + L L N
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTISIPSI-YLELKVKLENEY 443
Query: 353 --HFRLV--YSL---FNRDHFRLVYSLFNRDHFRLVYSLFNRDH------FRLVYSLFNR 399
H +V Y++ F+ D Y L + + + L N +H FR+V+ F
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR- 501
Query: 400 DHF---RLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHF-RLVYSLFNRDHF--RLV 453
F ++ + + + + + F Y N + RLV ++ F ++
Sbjct: 502 --FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DFLPKIE 556
Query: 454 YSLFNRDHFRLV-YSLFNRD 472
+L + L+ +L D
Sbjct: 557 ENLICSKYTDLLRIALMAED 576
Score = 42.9 bits (100), Expect = 2e-04
Identities = 58/368 (15%), Positives = 120/368 (32%), Gaps = 70/368 (19%)
Query: 29 NILEVEHSHVRFLGNLVL-NLWDCGGQEAFMENY-----FTSQRDNIFRNVAVLIYVFDV 82
L + L LVL N+ + AF N T+ R + +
Sbjct: 235 RRLLKSKPYENCL--LVLLNVQNAKAWNAF--NLSCKILLTT-RFKQVTDFLSAATTTHI 289
Query: 83 ESRELDRDLHYYQS--CLEAMLHNSPDS--KVFCLIH--KIDLVHENQRDVAWSSIVYQL 136
L + L L P + + ++ ++ E+ RD + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 137 IPNVKELEQSLHLFATLMDGDEVL-LFER-ATF----------LVISHCQRKEHRDIHRF 184
+ N +L + +++ E +F+R + F L + +
Sbjct: 350 V-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------- 401
Query: 185 EKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRD--HFRLV--YSL 240
+ ++ + YSL + S+ + + L L N H +V Y++
Sbjct: 402 SDVMVVVNKLH-----KYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNI 455
Query: 241 ---FNRDHFRLVYSLFNRDHFRLVYSLFNRDH------FRLVYSLFNRDHF---RLVYSL 288
F+ D Y L + + + L N +H FR+V+ F F ++ +
Sbjct: 456 PKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDS 511
Query: 289 FNRDHFRLVYSLFNRDHFRLVYSLFNRDHF-RLVYSLFNRDHF--RLVYSLFNRDHFRLV 345
+ + + + F Y N + RLV ++ F ++ +L + L+
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DFLPKIEENLICSKYTDLL 568
Query: 346 -YSLFNRD 352
+L D
Sbjct: 569 RIALMAED 576
Score = 34.8 bits (79), Expect = 0.082
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 20/109 (18%)
Query: 370 YSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLV 429
YSL + S+ + + L + Y+L H +V DH+ +
Sbjct: 414 YSLVEKQPKESTISIPSI-YLEL------KVKLENEYAL----HRSIV------DHYNIP 456
Query: 430 YSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLRF 478
+ F+ D Y L + + + L N +H +LF RF
Sbjct: 457 KT-FDSDDLIPPY-LDQYFYSHIGHHLKNIEHPER-MTLFRMVFLDFRF 502
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 40.1 bits (94), Expect = 5e-04
Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 22/123 (17%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELD 88
+ L ++ V+ +L+ GQ + + R I R V +++V D L
Sbjct: 60 DFLPLDIGEVKGF-KTRFHLYTVPGQVF-----YNASRKLILRGVDGIVFVADSAPNRLR 113
Query: 89 RDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV--AWSSIVYQLIPNVKELEQS 146
+ ++ E + + ++ N+RD+ A V+ +
Sbjct: 114 ANAESMRNMRENLAEYGLTLDDVPI-----VIQVNKRDLPDALP---------VEMVRAV 159
Query: 147 LHL 149
+
Sbjct: 160 VDP 162
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 7e-04
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 17/45 (37%)
Query: 122 ENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERAT 166
E Q +K+L+ SL L+A D L +AT
Sbjct: 18 EKQ--------------ALKKLQASLKLYAD--DSAPALAI-KAT 45
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 39.5 bits (93), Expect = 7e-04
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
N+ ++ +V LWD GGQ F E Y R V+ ++Y+ D +
Sbjct: 58 NMRKITKGNVTI------KLWDIGGQPRFRSMWERY--------CRGVSAIVYMVD--AA 101
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ ++ + ++ L +L + L+ +K DL
Sbjct: 102 DQEK-IEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 39.7 bits (93), Expect = 0.001
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 18/112 (16%)
Query: 15 FTSNTFVMVVIS-DPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNV 73
+ + S + + ++ R L L D G E+ D +
Sbjct: 27 LLTGQYRDTQTSITDSSAIYKVNNNR---GNSLTLIDLPGHESLRFQLL----DRFKSSA 79
Query: 74 AVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSK------VFCLIHKIDL 119
+++V D S R++ L +L +S K + C +K D+
Sbjct: 80 RAVVFVVD--SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC--NKQDI 127
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 39.1 bits (92), Expect = 0.001
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
N+ V + +++F +WD GG + Y + N +IYV D S
Sbjct: 42 NVETVTYKNLKF------QVWDLGGLTSIRPYWRCY--------YSNTDAVIYVVD--SC 85
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ DR + +S L AML K ++ +K D+
Sbjct: 86 DRDR-IGISKSELVAMLEEEELRKAILVVFANKQDM 120
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 38.7 bits (91), Expect = 0.002
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 22/97 (22%)
Query: 28 PNILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVES 84
P E+ GN+ +D GG ++Y F V ++++ D +
Sbjct: 57 PTSEELAI------GNIKFTTFDLGGHIQARRLWKDY--------FPEVNGIVFLVD--A 100
Query: 85 RELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ +R + L+A+ + + V +I +KID
Sbjct: 101 ADPER-FDEARVELDALFNIAELKDVPFVILGNKIDA 136
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 38.0 bits (89), Expect = 0.003
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
N+ VE+ ++ F +WD GGQ+ +Y F+N LI+V D S
Sbjct: 64 NVETVEYKNICF------TVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVD--SN 107
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ +R + L+ ML L+ +K D+
Sbjct: 108 DRER-VQESADELQKMLQEDELRDAVLLVFANKQDM 142
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 37.6 bits (88), Expect = 0.003
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 17/56 (30%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFD 81
+I + + S + F ++D GQ + E+Y ++ +I+V D
Sbjct: 58 SIEKFKSSSLSF------TVFDMSGQGRYRNLWEHY--------YKEGQAIIFVID 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 37.6 bits (88), Expect = 0.003
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
N+ +++ N+ +WD GGQ Y F + +IYV D S
Sbjct: 57 NLETLQY------KNISFEVWDLGGQTGVRPYWRCY--------FSDTDAVIYVVD--ST 100
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ DR + + L A+L K LI +K DL
Sbjct: 101 DRDR-MGVAKHELYALLDEDELRKSLLLIFANKQDL 135
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 37.6 bits (88), Expect = 0.004
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
NI +EH + N+WD GGQ++ NY F + LI+V D S
Sbjct: 53 NIKTLEHRGFKL------NIWDVGGQKSLRSYWRNY--------FESTDGLIWVVD--SA 96
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ R + Q L+++L + LI +K DL
Sbjct: 97 DRQR-MQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 37.2 bits (87), Expect = 0.004
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
N+ + + +++ N+WD GGQ + Y + + A +I+V D S
Sbjct: 53 NVETLSYKNLKL------NVWDLGGQTSIRPYWRCY--------YADTAAVIFVVD--ST 96
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ DR + L ML L+ +K D
Sbjct: 97 DKDR-MSTASKELHLMLQEEELQDAALLVFANKQDQ 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 37.4 bits (87), Expect = 0.005
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 26/117 (22%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQE---AFMENYFTSQRDNIFR 71
T+++ V+S + ++ L D G + +Y +
Sbjct: 32 LTTDSVRPTVVSQEPLSAADYDGSGV------TLVDFPGHVKLRYKLSDYL----KTRAK 81
Query: 72 NVAVLIYVFD--------VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLV 120
V LI++ D + E L S E+ N D + C +K +L
Sbjct: 82 FVKGLIFMVDSTVDPKKLTTTAEF---LVDILSITESSCENGIDILIAC--NKSELF 133
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 36.8 bits (86), Expect = 0.006
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 17/61 (27%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
N+ VE+ ++ F +WD GGQ+ +Y F+N LI+V D R
Sbjct: 35 NVETVEYKNISF------TVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDR 80
Query: 86 E 86
E
Sbjct: 81 E 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 36.5 bits (85), Expect = 0.009
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
N+ E+ ++ RF +WD GGQE+ Y + N +I V D S
Sbjct: 56 NVEEIVINNTRF------LMWDIGGQESLRSSWNTY--------YTNTEFVIVVVD--ST 99
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ +R + + L ML + K LI +K D+
Sbjct: 100 DRER-ISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 36.4 bits (85), Expect = 0.009
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
NI V+ LN+WD GGQ +Y F N +LIYV D S
Sbjct: 51 NIKSVQS------QGFKLNVWDIGGQRKIRPYWRSY--------FENTDILIYVID--SA 94
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ R L +L S V LI +K DL
Sbjct: 95 DRKR-FEETGQELTELLEEEKLSCVPVLIFANKQDL 129
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 36.5 bits (85), Expect = 0.009
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 22/97 (22%)
Query: 28 PNILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVES 84
P E+ + +D GG +NY + ++++ D
Sbjct: 59 PTSEELTI------AGMTFTTFDLGGHIQARRVWKNY--------LPAINGIVFLVD--C 102
Query: 85 RELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ +R L + L++++ + + V LI +KID
Sbjct: 103 ADHER-LLESKEELDSLMTDETIANVPILILGNKIDR 138
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 35.7 bits (83), Expect = 0.016
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
N+ E+ ++ RF +WD GGQE+ Y + N +I V D S
Sbjct: 51 NVEEIVINNTRF------LMWDIGGQESLRSSWNTY--------YTNTEFVIVVVD--ST 94
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ +R + + L ML + K LI +K D+
Sbjct: 95 DRER-ISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 34.7 bits (80), Expect = 0.030
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 26/117 (22%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQE---AFMENYFTSQRDNIFR 71
T+++ V+S + ++ L D G + +Y +
Sbjct: 68 LTTDSVRPTVVSQEPLSAADYDGSGV------TLVDFPGHVKLRYKLSDYL----KTRAK 117
Query: 72 NVAVLIYVFD--------VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLV 120
V LI++ D + E L S E+ N D + C +K +L
Sbjct: 118 FVKGLIFMVDSTVDPKKLTTTAEF---LVDILSITESSCENGIDILIAC--NKSELF 169
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 34.9 bits (80), Expect = 0.052
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 17/56 (30%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFD 81
N+ VE+ N+ +WD GGQ+ +Y F+N LI+V D
Sbjct: 200 NVETVEY------KNISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVD 241
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 35.0 bits (80), Expect = 0.054
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAML 102
+ + WD GGQE + + Q +V + + D + + HY+ +E
Sbjct: 97 ECLFHFWDFGGQEIM---HASHQ--FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEK-- 146
Query: 103 HNSPDSKVFCLIHKIDLVHENQRD 126
S V +++KID +
Sbjct: 147 -YGGKSPVIVVMNKIDENPSYNIE 169
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 34.5 bits (79), Expect = 0.083
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
N+ V + +V+F N+WD GGQ+ +Y + LI+V D
Sbjct: 357 NVETVTYKNVKF------NVWDVGGQDKIRPLWRHY--------YTGTQGLIFVVD--CA 400
Query: 86 ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
+ DR + + L ++++ LI +K DL
Sbjct: 401 DRDR-IDEARQELHRIINDREMRDAIILIFANKQDL 435
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 33.2 bits (76), Expect = 0.12
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
+T+N F I P + + ++V G V L LWD GQE + R +
Sbjct: 25 YTTNAFPGEYI--PTVFDNYSANVMVDGKPVNLGLWDTAGQE-----DYDRLRPLSYPQT 77
Query: 74 AVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDL 119
V + F + S + + + H+ P++ + + K+DL
Sbjct: 78 DVSLICFSLVSPASFENVRAKW---YPEVRHHCPNTPIILVGTKLDL 121
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 33.1 bits (76), Expect = 0.12
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 18/121 (14%)
Query: 15 FTSNTFVMVVISDPNI--------LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQR 66
+ + + +++ R +LVLN+WD G+E F Y T
Sbjct: 22 LMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKR---DLVLNVWDFAGREEF---YSTHP- 74
Query: 67 DNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD 126
+ A+ + V+D+ + ++ + L + + S V + +D+ E QR
Sbjct: 75 -HFMTQRALYLAVYDLSKGQ--AEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRK 131
Query: 127 V 127
Sbjct: 132 A 132
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 32.7 bits (75), Expect = 0.20
Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 29/197 (14%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
+TSN F I P + + ++V G +V L LWD GQE ++ R +R
Sbjct: 29 YTSNKFPTDYI--PTVFDNFSANVAVDGQIVNLGLWDTAGQE-----DYSRLRPLSYRGA 81
Query: 74 AVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDL------VHENQRD 126
+ + F + S+ + L + + + +P+ + + K+DL + ++
Sbjct: 82 DIFVLAFSLISKASYENVLKKW---MPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV 138
Query: 127 VAWSSI--VYQLIPNVKELEQSLHLFATLMDG-DEVLLFERATFLVISHCQRKEHRDIHR 183
+ + + + I +E S + V F+ A +V+ +RKE +
Sbjct: 139 ITSTQGEELRKQIGAAAYIECS----SKTQQNVKAV--FDTAIKVVLQPPRRKEVPRRRK 192
Query: 184 FEKISN--IIKQFKLSC 198
+ S I C
Sbjct: 193 NHRRSGCSIASIVCGGC 209
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 32.4 bits (74), Expect = 0.22
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
F + F + P + E + + L+LWD G Y+ + R + +
Sbjct: 27 FAKDCFPENYV--PTVFENYTASFEIDTQRIELSLWDTSGSP-----YYDNVRPLSYPDS 79
Query: 74 AVLIYVFDVESRE 86
++ FD+ E
Sbjct: 80 DAVLICFDISRPE 92
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 32.3 bits (74), Expect = 0.23
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNI---- 69
F+ + P + E +++ L+LWD GQE + D +
Sbjct: 43 FSKGEIPTAYV--PTVFENFSHVMKYKNEEFILHLWDTAGQEEY---------DRLRPLS 91
Query: 70 FRNVAVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
+ + V++ F V +R D + + H +K + K+DL + DV
Sbjct: 92 YADSDVVLLCFAVNNRTSFDNISTKW---EPEIKHYIDTAKTVLVGLKVDLRKDGSDDV 147
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 31.6 bits (72), Expect = 0.35
Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 31/178 (17%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
+T+N + I P + + V G V L L D GQ+ F R + N
Sbjct: 40 YTTNGYPTEYI--PTAFDNFSAVVSVDGRPVRLQLCDTAGQD-----EFDKLRPLCYTNT 92
Query: 74 AVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDL----------VHE 122
+ + F V S + + + + P + + + + DL
Sbjct: 93 DIFLLCFSVVSPSSFQNVSEKW---VPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKC 149
Query: 123 NQRDVAWSSI--VYQLIPNVKELEQSLHLFATLMDG-DEVLLFERATFLVISHCQRKE 177
++ V + + + I +E S A EV F+ A I + ++
Sbjct: 150 KEKPVPEEAAKLLAEEIKAASYIECS----ALTQKNLKEV--FDAAIVAGIQYSDTQQ 201
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 31.6 bits (72), Expect = 0.38
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
F+ + F V + P + E + + G V L LWD GQE + R + +
Sbjct: 45 FSKDEFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGQE-----DYDRLRPLSYPDT 97
Query: 74 AVLIYVFDVESRE 86
V++ F V+S +
Sbjct: 98 DVILMCFSVDSPD 110
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 31.7 bits (72), Expect = 0.40
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNI---- 69
F F P + E +++ G V L++WD GQ+ + D +
Sbjct: 54 FADGAFPESYT--PTVFERYMVNLQVKGKPVHLHIWDTAGQDDY---------DRLRPLF 102
Query: 70 FRNVAVLIYVFDVESRE 86
+ + +VL+ FDV S
Sbjct: 103 YPDASVLLLCFDVTSPN 119
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 31.3 bits (71), Expect = 0.48
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
+T+N F I P + + ++V G V L LWD GQE + R +
Sbjct: 50 YTTNAFPGEYI--PTVFDNYSANVMVDGKPVNLGLWDTAGQE-----DYDRLRPLSYPQT 102
Query: 74 AVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDL 119
V + F + S + + + H+ P++ + + K+DL
Sbjct: 103 DVFLICFSLVSPASFENVRAKW---YPEVRHHCPNTPIILVGTKLDL 146
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 31.3 bits (71), Expect = 0.50
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 18/110 (16%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
+ ++ F + P + + V G L L+D GQE + R +
Sbjct: 38 YANDAFPEEYV--PTVFDHYAVSVTVGGKQYLLGLYDTAGQE-----DYDRLRPLSYPMT 90
Query: 74 AVLIYVFDVESRELDRDLHYYQSCLEA----MLHNSPDSKVFCLIHKIDL 119
V + F V + +Q+ E + +P+ + +IDL
Sbjct: 91 DVFLICFSVVNPAS------FQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 31.1 bits (71), Expect = 0.56
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 15 FTSNTFVMVVISDPNI-------LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRD 67
F M + L V+ + +L++W+ G+ ++ D
Sbjct: 26 FAGVHDSMDSDXEVLGEDTYERTLMVDGESATII---LLDMWENKGENEWL-------HD 75
Query: 68 NIFRNVAVLIYVFDVESRE 86
+ + + V+ + R
Sbjct: 76 HCMQVGDAYLIVYSITDRA 94
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 30.7 bits (70), Expect = 0.66
Identities = 7/83 (8%), Positives = 19/83 (22%), Gaps = 11/83 (13%)
Query: 46 LNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE-LDRDLHYYQSCLEAMLHN 104
+ + + G +I+VF +E +
Sbjct: 56 VLIREEAGAP----------DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEG 105
Query: 105 SPDSKVFCLIHKIDLVHENQRDV 127
+ + + + + R V
Sbjct: 106 RGGLALALVGTQDRISASSPRVV 128
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 30.4 bits (69), Expect = 0.87
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
+TSNTF + P + + ++V G V L LWD GQE + R +R
Sbjct: 28 YTSNTFPTDYV--PTVFDNFSANVVVNGATVNLGLWDTAGQE-----DYNRLRPLSYRGA 80
Query: 74 AVLIYVFDVESRE 86
V I F + S+
Sbjct: 81 DVFILAFSLISKA 93
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 30.2 bits (68), Expect = 1.2
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
+ + + P + E + + V L+LWD G Y+ + R + +
Sbjct: 47 LAKDCYPETYV--PTVFENYTACLETEEQRVELSLWDTSGSP-----YYDNVRPLCYSDS 99
Query: 74 AVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDL 119
++ FD+ E +D L + +L P ++V + K DL
Sbjct: 100 DAVLLCFDISRPETVDSALKKW---RTEILDYCPSTRVLLIGCKTDL 143
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 29.0 bits (66), Expect = 2.2
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 46 LNLWDCGGQEAF---MENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAML 102
L +WD GGQ ++ Y ++ V+D+ + + +L + + ++ +
Sbjct: 58 LQIWDIGGQTIGGKMLDKY--------IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVS 109
Query: 103 HNSPDSKVFCLI-HKIDLVHENQRDV 127
S + L+ +KIDL E+ R +
Sbjct: 110 EESETQPLVALVGNKIDL--EHMRTI 133
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 29.2 bits (66), Expect = 2.2
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 17/82 (20%)
Query: 11 FIDEFTSNTFVMVVIS------DPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTS 64
F+ + F ++ P + ++F N+WD GQE F
Sbjct: 31 FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF------NVWDTAGQEK-----FGG 79
Query: 65 QRDNIFRNVAVLIYVFDVESRE 86
RD + I +FDV SR
Sbjct: 80 LRDGYYIQAQCAIIMFDVTSRV 101
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 28.6 bits (65), Expect = 3.1
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 17/117 (14%)
Query: 15 FTSNTFVMVVISDPNILEVEHS-HVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRN 72
F + FV DP I E ++ G L++ D GQE F + R+ R
Sbjct: 29 FIQSYFVSD--YDPTI-EDSYTKICSVDGIPARLDILDTAGQEEF-----GAMREQYMRA 80
Query: 73 VAVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLI-HKIDLVHENQRDV 127
+ VF + R+ + + L D L+ +K DL E+QR V
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILR---VKDRDDFPVVLVGNKADL--ESQRQV 132
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 28.8 bits (65), Expect = 3.3
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 15 FTSNTFVMVVISDPNI-------LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRD 67
F M + L V+ + +L++W+ G+ ++ D
Sbjct: 57 FAGVHDSMDSDCEVLGEDTYERTLMVDGESATII---LLDMWENKGENEWL-------HD 106
Query: 68 NIFRNVAVLIYVFDVESRE 86
+ + + V+ + R
Sbjct: 107 HCMQVGDAYLIVYSITDRA 125
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 28.6 bits (64), Expect = 3.6
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
F+ + F V + P + E + + G V L LWD GQE + R + +
Sbjct: 45 FSKDQFPEVYV--PTVFENYIADIEVDGKQVELALWDTAGQE-----DYDRLRPLSYPDT 97
Query: 74 AVLIYVFDVESRE 86
V++ F ++S +
Sbjct: 98 DVILMCFSIDSPD 110
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 28.3 bits (64), Expect = 4.1
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 46 LNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE-LDRDLHYYQSCLEAMLHN 104
L++ D GQE F ++ R+ R + V+ V + + ++Q L
Sbjct: 68 LDVLDTAGQEEF-----SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR---VK 119
Query: 105 SPDSKVFCLIH-KIDLVHENQRDV 127
+S L+ K+DL + R V
Sbjct: 120 DRESFPMILVANKVDL--MHLRKV 141
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 28.3 bits (64), Expect = 4.1
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 25/91 (27%)
Query: 46 LNLWDCGGQEAFMENYFTSQRDNI----FRNVAVLIYVFDVESRE----LDRDLHYYQSC 97
+ LWD GQE F R ++ +RNV +++V+D+ + L +
Sbjct: 71 IQLWDTAGQERF--------RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIE----- 117
Query: 98 LEAMLHNSPDSKVFCLI-HKIDLVHENQRDV 127
E H + L+ +K DL + V
Sbjct: 118 -ECKQHLLANDIPRILVGNKCDL--RSAIQV 145
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 28.8 bits (64), Expect = 4.2
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRNV 73
+T+N F I P + + ++V G V L LWD G E + R +
Sbjct: 175 YTTNAFPGEYI--PTVFDNYSANVMVDGKPVNLGLWDTAGLE-----DYDRLRPLSYPQT 227
Query: 74 AVLIYVFDVESRE 86
V + F + S
Sbjct: 228 DVFLICFSLVSPA 240
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 28.3 bits (64), Expect = 4.7
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 15/84 (17%)
Query: 46 LNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE-LDRDLHYYQSCLEAMLHN 104
L + D GG V +++VF +E +Y+
Sbjct: 69 LLIRDEGGPP----------ELQFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCS---FR 115
Query: 105 SPDSKVFCLI-HKIDLVHENQRDV 127
+ L+ + + N R +
Sbjct: 116 NASEVPMVLVGTQDAISAANPRVI 139
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.9 bits (63), Expect = 5.6
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGN--LVLNLWDCGGQEAFMENYFTSQRDNIFRN 72
F F DP + E +S + LG L+L D GQ+ + + +
Sbjct: 44 FVEGEFSEG--YDPTV-ENTYSKIVTLGKDEFHLHLVDTAGQDEY-----SILPYSFIIG 95
Query: 73 VAVLIYVFDVESRE 86
V + V+ V S
Sbjct: 96 VHGYVLVYSVTSLH 109
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 27.8 bits (62), Expect = 6.1
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 16/77 (20%)
Query: 15 FTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNI---- 69
F + F + P + E + + L+LWD G + DN+
Sbjct: 48 FAKDCFPENYV--PTVFENYTASFEIDTQRIELSLWDTSGSPYY---------DNVRPLS 96
Query: 70 FRNVAVLIYVFDVESRE 86
+ + ++ FD+ E
Sbjct: 97 YPDSDAVLICFDISRPE 113
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 27.4 bits (62), Expect = 7.5
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 15 FTSNTFVMVVISDPNILEVEHS-HVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRN 72
F + FV +P + V G V +++ D GQE + + RDN FR+
Sbjct: 24 FMYDEFVED--YEPTK-ADSYRKKVVLDGEEVQIDILDTAGQEDY-----AAIRDNYFRS 75
Query: 73 VAVLIYVFDVESRE 86
+ VF + E
Sbjct: 76 GEGFLCVFSITEME 89
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 27.1 bits (61), Expect = 8.7
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 15 FTSNTFVMVVISDPNILEVEHS-HVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRN 72
F + FV +P + V G V +++ D GQE + + RDN FR+
Sbjct: 38 FMYDEFVED--YEPTK-ADSYRKKVVLDGEEVQIDILDTAGQEDY-----AAIRDNYFRS 89
Query: 73 VAVLIYVFDVESRE 86
+ VF + E
Sbjct: 90 GEGFLCVFSITEME 103
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 27.1 bits (61), Expect = 9.0
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 15 FTSNTFVMVVISDPNILEVEHS-HVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNIFRN 72
N FV DP I E + V G L++ D GQE + ++ RD R
Sbjct: 23 LIQNHFV--DECDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEY-----SAMRDQYMRT 74
Query: 73 VAVLIYVFDVESRE 86
+ VF + + +
Sbjct: 75 GEGFLCVFAINNTK 88
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 27.3 bits (61), Expect = 9.0
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 24/90 (26%)
Query: 46 LNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESRE----LDRDLHYYQSCL 98
L LWD GQE F + FR+ + +FD+ S++ + +
Sbjct: 86 LQLWDTAGQERFRSLTTAF--------FRDAMGFLLMFDLTSQQSFLNVRNWMS------ 131
Query: 99 EAMLHNSPDSKVFCLI-HKIDLVHENQRDV 127
+ + ++ LI +K DL +QR+V
Sbjct: 132 QLQANAYCENPDIVLIGNKADL--PDQREV 159
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 27.1 bits (61), Expect = 9.0
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 23/121 (19%)
Query: 15 FTSNTFVMVVISDPNI------LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDN 68
F + + + V+ V L ++D Q +D+
Sbjct: 22 FGGLQGDHAHEMENSEDTYERRIMVDKEEVT------LIVYDIWEQGDA----GGWLQDH 71
Query: 69 IFRNVAVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLI-HKIDLVHENQRD 126
+ + VF V R + L+ +K DL R+
Sbjct: 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA---GRPHHDLPVILVGNKSDLARS--RE 126
Query: 127 V 127
V
Sbjct: 127 V 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.336 0.147 0.463
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,669,648
Number of extensions: 475698
Number of successful extensions: 2199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2119
Number of HSP's successfully gapped: 136
Length of query: 485
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 388
Effective length of database: 3,993,456
Effective search space: 1549460928
Effective search space used: 1549460928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (26.4 bits)