RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13568
(485 letters)
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 40.5 bits (94), Expect = 1e-04
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 7/115 (6%)
Query: 10 AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
+ F + F I+ I + + L +WD GQE F +
Sbjct: 17 CLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER-----FRTITTAY 71
Query: 70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQ 124
+R +I V+D+ ++ + + + ++++ + +K D+
Sbjct: 72 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVV 124
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 38.7 bits (89), Expect = 6e-04
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 8/135 (5%)
Query: 10 AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
+ F+ +T+ IS + + + L +WD GQE F + +
Sbjct: 21 CLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER-----FRTITSSY 75
Query: 70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
+R +I V+DV +E + + + + + + L+ + + +
Sbjct: 76 YRGSHGIIIVYDVTDQESFNGVKMWLQE---IDRYATSTVLKLLVGNKCDLKDKRVVEYD 132
Query: 130 SSIVYQLIPNVKELE 144
+ + + LE
Sbjct: 133 VAKEFADANKMPFLE 147
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 37.5 bits (86), Expect = 0.001
Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 10 AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
+F+ + ++F +S I + R + L +WD GQE + +
Sbjct: 20 SFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER-----YRTITTAY 74
Query: 70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
+R I ++D+ + E + + + ++ +++V + +K D+ E
Sbjct: 75 YRGAMGFILMYDITNEESFNAVQDWSTQ--IKTYSWDNAQVLLVGNKCDMEDERVVSSER 132
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 36.8 bits (84), Expect = 0.002
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 8/137 (5%)
Query: 10 AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
+ +F F + + L +WD GQE F S +
Sbjct: 20 CLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR-----SVTRSY 74
Query: 70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
+R A + V+D+ SRE L + + + + V L + ++
Sbjct: 75 YRGAAGALLVYDITSRETYNALTNWLTD---ARMLASQNIVIILCGNKKDLDADREVTFL 131
Query: 130 SSIVYQLIPNVKELEQS 146
+ + + LE S
Sbjct: 132 EASRFAQENELMFLETS 148
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 36.3 bits (83), Expect = 0.003
Identities = 16/120 (13%), Positives = 41/120 (34%), Gaps = 5/120 (4%)
Query: 10 AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
+ F+ + F IS I + + L +WD GQE F +
Sbjct: 21 CVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER-----FRTITTAY 75
Query: 70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
+R ++ V+D+ + + ++ + +E + + ++ + ++
Sbjct: 76 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 135
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 36.4 bits (83), Expect = 0.003
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 9/120 (7%)
Query: 10 AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
+ + FT +TF + + + + L +WD GQE F + +
Sbjct: 22 SLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER-----FRTLTPSY 76
Query: 70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
+R +I V+DV RD L + + + + R+V
Sbjct: 77 YRGAQGVILVYDVT----RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDR 132
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 30.2 bits (67), Expect = 0.36
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 6/121 (4%)
Query: 10 AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDN 68
+ F F+ ++ + + G V L +WD GQE F S
Sbjct: 21 CLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE-----RFRSVTHA 75
Query: 69 IFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVA 128
+R+ L+ ++DV ++ ++ + + + + + +R+
Sbjct: 76 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDG 135
Query: 129 W 129
Sbjct: 136 E 136
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.4 bits (65), Expect = 0.54
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 8/137 (5%)
Query: 10 AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
+ FT F + + + + + L +WD GQE F S +
Sbjct: 20 CLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER-----FRSITQSY 74
Query: 70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
+R+ LI +D+ L + + + + L+ + E +
Sbjct: 75 YRSANALILTYDITCE---ESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ 131
Query: 130 SSIVYQLIPNVKELEQS 146
+ + ++ LE S
Sbjct: 132 RAEEFSEAQDMYYLETS 148
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 27.7 bits (60), Expect = 2.6
Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 11/165 (6%)
Query: 75 VLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVY 134
V I+ + ++ L + L + +++ EN V
Sbjct: 26 VRIWGTEFDTEILKSISAGREHP---RLGVKLNGVEIFWPEQLEKCLENAEVVLLGVSTD 82
Query: 135 QLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQF 194
++P + + L ++ ++ F+ + V R +H R I+
Sbjct: 83 GVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITG----- 137
Query: 195 KLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYS 239
+ + R +V+S + + +F ++F + +
Sbjct: 138 ---PAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVT 179
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 27.7 bits (60), Expect = 3.0
Identities = 7/118 (5%), Positives = 32/118 (27%), Gaps = 4/118 (3%)
Query: 10 AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
+ + T+++ V+S + ++ +++ + +Y ++ +
Sbjct: 18 SLLTLLTTDSVRPTVVSQEPLSAADYDGSGVT---LVDFPGHVKLRYKLSDYLKTRAKFV 74
Query: 70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
+ ++ D + + + +K +L
Sbjct: 75 KGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSK 131
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.4 bits (57), Expect = 6.6
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 8/137 (5%)
Query: 11 FIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLV-LNLWDCGGQEAFMENYFTSQRDNI 69
F +F + + + V L LWD GQE F S
Sbjct: 30 FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-----FRSLTTAF 84
Query: 70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
FR+ + +FD+ S++ ++ + S + ++ LI + + +
Sbjct: 85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQ--LQANAYCENPDIVLIGNKADLPDQREVNER 142
Query: 130 SSIVYQLIPNVKELEQS 146
+ + E S
Sbjct: 143 QARELADKYGIPYFETS 159
>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase
KduI {Enterococcus faecalis [TaxId: 1351]}
Length = 260
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 207 RDHFRLVYSLFNRDHFRLVYSLFNR 231
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 219 RDHFRLVYSLFNRDHFRLVYSLFNR 243
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 231 RDHFRLVYSLFNRDHFRLVYSLFNR 255
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 243 RDHFRLVYSLFNRDHFRLVYSLFNR 267
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 255 RDHFRLVYSLFNRDHFRLVYSLFNR 279
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 267 RDHFRLVYSLFNRDHFRLVYSLFNR 291
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 279 RDHFRLVYSLFNRDHFRLVYSLFNR 303
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 291 RDHFRLVYSLFNRDHFRLVYSLFNR 315
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 303 RDHFRLVYSLFNRDHFRLVYSLFNR 327
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 315 RDHFRLVYSLFNRDHFRLVYSLFNR 339
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 327 RDHFRLVYSLFNRDHFRLVYSLFNR 351
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 339 RDHFRLVYSLFNRDHFRLVYSLFNR 363
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 351 RDHFRLVYSLFNRDHFRLVYSLFNR 375
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 363 RDHFRLVYSLFNRDHFRLVYSLFNR 387
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 375 RDHFRLVYSLFNRDHFRLVYSLFNR 399
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 387 RDHFRLVYSLFNRDHFRLVYSLFNR 411
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 399 RDHFRLVYSLFNRDHFRLVYSLFNR 423
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 411 RDHFRLVYSLFNRDHFRLVYSLFNR 435
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 423 RDHFRLVYSLFNRDHFRLVYSLFNR 447
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 435 RDHFRLVYSLFNRDHFRLVYSLFNR 459
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 447 RDHFRLVYSLFNRDHFRLVYSLFNR 471
RD F LV +F L Y+ +R
Sbjct: 21 RDEF-LVEKVFIPGAISLTYTHNDR 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.336 0.147 0.463
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,897,802
Number of extensions: 93744
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 64
Length of query: 485
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,185,626
Effective search space: 469507896
Effective search space used: 469507896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.6 bits)