BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13569
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFX|A Chain A, Crystal Structure Of Ape0204 From Aeropyrum Pernix
Length = 186
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 33 YIASWHVIGIVMLSPKLQRVVRINDHQLTNLSDRAKYDHSLSGYLEKRTSDQA 85
++ WH++G+ + PK ++L N RA+Y HS+ +E +
Sbjct: 46 WVEEWHIVGVALHDPK-------GRYELRNGEIRARYGHSIPVNVEPLPGEPP 91
>pdb|1BKJ|A Chain A, Nadph:fmn Oxidoreductase From Vibrio Harveyi
pdb|1BKJ|B Chain B, Nadph:fmn Oxidoreductase From Vibrio Harveyi
pdb|2BKJ|A Chain A, Nadph:fmn Oxidoreductase From Vibrio Harveyi Complexed
With Nad+
pdb|2BKJ|B Chain B, Nadph:fmn Oxidoreductase From Vibrio Harveyi Complexed
With Nad+
Length = 240
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 45 LSPKLQR--VVRINDHQLTNLSDRAKYDHSLSGYLEKRTSDQ 84
+ P+L VV N +Q NL D YD ++ Y RTS+Q
Sbjct: 166 VKPRLPAHVVVHENQYQELNLDDIQSYDQTMQAYYASRTSNQ 207
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 17 GIRQLRNSTNFEEIKRYIASWHVIGIVMLSPKL----------QRVVRINDHQLTNLSD 65
GI+ NS NFEE+ I S VI V + P L +R + +NDH T++ D
Sbjct: 202 GIKIYTNS-NFEEMGDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHMETSIKD 259
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 62 NLSDRAKYDHSLSGYLEKRTSDQARWQTRWFVLYQNKV 99
+L A + GYL K+ W+TRWF L++N++
Sbjct: 9 DLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNEL 46
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 75 GYLEKRTSDQARWQTRWFVLYQNKVIAY 102
GY+ K+ + W RWFVL N +I+Y
Sbjct: 12 GYMMKKGHRRKNWTERWFVLKPN-IISY 38
>pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp
pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp
Length = 273
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 7 SLWFFDARKSGIRQLRNSTNFEEIKRYIASWHVIGIVMLSPKLQRVVRINDHQ 59
S+ + A K I Q+ S E K I V V+L+P ++ ++ N HQ
Sbjct: 167 SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQ 219
>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain
Length = 108
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 73 LSGYLEKRTSDQARWQTRWFVLYQNKVIAY 102
+ G L K T+ WQ RWFVL N +++Y
Sbjct: 9 MEGVLYKWTNYLTGWQPRWFVL-DNGILSY 37
>pdb|1U5D|A Chain A, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|B Chain B, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|C Chain C, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|D Chain D, Crystal Structure Of The Ph Domain Of Skap55
Length = 108
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 14/48 (29%)
Query: 75 GYLEKRTSDQ----ARWQTRWFVLYQNKVIAYCWSKGTFQSYASSIGK 118
GYLEK++ D + WQ RW V+ S+G F YA+ K
Sbjct: 7 GYLEKKSKDHSFFGSEWQKRWCVV----------SRGLFYYYANEKSK 44
>pdb|3DSM|A Chain A, Crystal Structure Of The Surface Layer Protein
Bacuni_02894 From Bacteroides Uniformis, Northeast
Structural Genomics Consortium Target Btr193d
Length = 328
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 27 FEEIKRYIASWHVIGIVMLSPKLQRVVRINDHQLTNLSDRAKYDHSLSGYLEKRTSDQAR 86
F+E+ R I LS + V +I D+++ ++ + + ++GY+E D
Sbjct: 74 FKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT---YEITGYIECPDXDXES 130
Query: 87 WQTRWFVLYQNKVIAYCWS 105
T V Y V CWS
Sbjct: 131 GSTEQXVQYGKYVYVNCWS 149
>pdb|1U5E|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|1U5E|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
Length = 211
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 74 SGYLEKRTSDQA----RWQTRWFVL 94
+GYLEKR D + WQ RW L
Sbjct: 109 AGYLEKRRKDHSFLGFEWQKRWCAL 133
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 74 SGYLEKRTSDQA----RWQTRWFVL 94
+GYLEKR D + WQ RW L
Sbjct: 20 AGYLEKRRKDHSFLGFEWQKRWCAL 44
>pdb|1U5G|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|B Chain B, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|C Chain C, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|D Chain D, Crystal Structure Of The Ph Domain Of Skap-Hom
Length = 122
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 74 SGYLEKRTSDQA----RWQTRWFVL 94
+GYLEKR D + WQ RW L
Sbjct: 20 AGYLEKRRKDHSFLGFEWQKRWCAL 44
>pdb|3RCP|A Chain A, Crystal Structure Of The Fapp1 Pleckstrin Homology Domain
Length = 103
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 75 GYLEKRTSDQARWQTRWFVLYQNKVIAY 102
G L K T+ WQ RWFVL N +++Y
Sbjct: 3 GVLYKWTNYLTGWQPRWFVL-DNGILSY 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.133 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,494,952
Number of Sequences: 62578
Number of extensions: 121380
Number of successful extensions: 341
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 20
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)