RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13569
(118 letters)
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 41.9 bits (98), Expect = 4e-06
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNKVIAY 102
G+L +++S RW+ WF L+ + + Y
Sbjct: 11 GGWLWRQSSILRRWKRNWFALWLDGTLGY 39
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 39.9 bits (93), Expect = 2e-05
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNKVIAY 102
SG+L ++++ RW+ WF L+ + + Y
Sbjct: 8 SGWLLRQSTILKRWKKNWFDLWSDGHLIY 36
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 37.8 bits (88), Expect = 1e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNK 98
G+L+K+ S WQ R+FVL +
Sbjct: 11 MGWLKKQRSIVKNWQQRYFVLRAQQ 35
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 115
Score = 37.4 bits (87), Expect = 1e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNK 98
GY+ K+ + W RWFVL N
Sbjct: 11 QGYMMKKGHRRKNWTERWFVLKPNI 35
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 37.4 bits (87), Expect = 2e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 73 LSGYLEKRTSDQARWQTRWFVLYQN 97
+SGYL + + W+ WFV+
Sbjct: 10 MSGYLYRSKGSKKPWKHLWFVIKNK 34
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 36.6 bits (85), Expect = 2e-04
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 73 LSGYLEKRTSDQARWQTRWFVLYQNKVIAYCWSK 106
G L K T+ WQ RW VL +N ++Y S+
Sbjct: 3 RCGVLSKWTNYIHGWQDRWVVL-KNNALSYYKSE 35
>2d9y_A Pleckstrin homology domain-containing protein family A member 6;
PH domain, PEPP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 117
Score = 37.0 bits (86), Expect = 2e-04
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 74 SGYLEKRTSDQAR-WQTRWFVLYQNK 98
+G+L K+ S + W RWFVL
Sbjct: 14 AGWLFKQASSGVKQWNKRWFVLVDRC 39
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 36.8 bits (85), Expect = 3e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNKVIAY 102
GYL K+ + W+ R FVL ++ +
Sbjct: 21 QGYLAKQGHKRKNWKVRRFVLRKDPAFLH 49
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 36.7 bits (85), Expect = 3e-04
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 74 SGYLEKRTSDQAR-WQTRWFVLYQNK 98
G+L K+ S R W+ RWFVL +
Sbjct: 14 RGWLHKQDSSGLRLWKRRWFVLSGHC 39
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 36.4 bits (84), Expect = 3e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 72 SLSGYLEKRTSDQARWQTRWFVLYQNK 98
++ GYL K T+ WQ R+FVL
Sbjct: 9 NVYGYLMKYTNLVTGWQYRFFVLNNEA 35
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 36.3 bits (84), Expect = 4e-04
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 73 LSGYLEKRTSDQARWQTRWFVLYQNKVIAYC 103
+ G L K T+ WQ RWFVL N +++Y
Sbjct: 1 MEGVLYKWTNYLTGWQPRWFVL-DNGILSYY 30
>2yry_A Pleckstrin homology domain-containing family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 122
Score = 36.6 bits (85), Expect = 4e-04
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 74 SGYLEKRTSDQAR-WQTRWFVLYQNK 98
+G+L K+ S + W RWFVL
Sbjct: 25 AGWLFKQASSGVKQWNKRWFVLVDRC 50
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 36.2 bits (84), Expect = 4e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNK 98
GYL K+ S W+ W VL ++
Sbjct: 8 EGYLVKKGSVFNTWKPMWVVLLEDG 32
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 36.4 bits (84), Expect = 5e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNKVIAY 102
G+L KR W+ R+F+L +
Sbjct: 11 EGWLHKRGEYIKTWRPRYFLLKNDGTFIG 39
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein,
lipid degradation, phosphatidylinositol (3,
4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo
sapiens} SCOP: b.55.1.1
Length = 125
Score = 35.9 bits (83), Expect = 6e-04
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNK 98
+GY K+ + W+ R+F L +N
Sbjct: 17 AGYCVKQGAVMKNWKRRYFQLDENT 41
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 35.8 bits (83), Expect = 7e-04
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNK 98
GYL K+ W+TRWF L++N+
Sbjct: 21 EGYLTKQGGLVKTWKTRWFTLHRNE 45
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 35.9 bits (82), Expect = 7e-04
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 75 GYLEKRTSDQARWQTRWFVLYQNK 98
G+L + S ++ W L
Sbjct: 22 GFLLIKRSGYREYEHYWTELRGTT 45
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 35.5 bits (82), Expect = 8e-04
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNK 98
G L K+ + W+ R F+L ++
Sbjct: 21 QGCLLKQGHRRKNWKVRKFILREDP 45
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 35.1 bits (81), Expect = 9e-04
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNKVIAY 102
G L K+ + W+ R F+L ++ +
Sbjct: 10 QGCLLKQGHRRKNWKVRKFILREDPAYLH 38
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology
domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.55.1.1
Length = 117
Score = 35.5 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 70 DHSLSGYLEKRTSDQARWQTRWFVLYQNK 98
S G L K+ + W+ RWFVL + K
Sbjct: 7 GRSYEGILYKKGAFMKPWKARWFVLDKTK 35
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 35.1 bits (81), Expect = 0.001
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 74 SGYLEKRTSDQA----RWQTRWFVLYQNK 98
G L + W+T + VL
Sbjct: 3 EGMLHYKAGTSYLGKEHWKTCFVVLSNGI 31
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH
domain, pleckstrin homology domain-containing protein
family A member 5; NMR {Homo sapiens}
Length = 128
Score = 34.8 bits (80), Expect = 0.002
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 74 SGYLEKRTSDQAR-WQTRWFVLYQNK 98
G+L K+ S + W+ RWFVL
Sbjct: 24 RGWLYKQDSTGMKLWKKRWFVLSDLC 49
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus
musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A*
1fhx_A* 1u29_A* 1u27_A*
Length = 127
Score = 34.6 bits (79), Expect = 0.002
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQNK 98
G+L K W+ RWF+L N
Sbjct: 8 EGWLLKLGGRVKTWKRRWFILTDNC 32
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 34.4 bits (78), Expect = 0.002
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 74 SGYLEKRTSDQ--ARWQTRWFVLYQNKVIAY 102
+L KR+ + W+ ++ L N + Y
Sbjct: 7 QSFLLKRSGNSLNKEWKKKYVTLSSNGFLLY 37
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 33.7 bits (77), Expect = 0.004
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 74 SGYLEKRTSDQAR-WQTRWFVLYQNKVIAYC 103
SGYL + + W+ R+FVL Q +
Sbjct: 11 SGYLWAIGKNVWKRWKKRFFVLVQVSQYTFA 41
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 33.5 bits (77), Expect = 0.004
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 74 SGYLEKRTSDQAR-WQTRWFVLYQNK 98
SG+L+K + R +Q RW
Sbjct: 11 SGWLDKLSPQGKRMFQKRWVKFDGLS 36
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae}
PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 33.8 bits (77), Expect = 0.004
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 70 DHSL----SGYLEKRTSDQARWQTRWFVLYQN 97
DH SG+LE+R+ + ++VL N
Sbjct: 1 DHPFTEIKSGFLERRSKFLKSYSKGYYVLTPN 32
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 33.2 bits (76), Expect = 0.005
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 72 SLSGYLEKRTSDQAR--WQTRWFVLYQNK 98
L GYL K W++RWF + K
Sbjct: 9 KLCGYLSKFGGKGPIRGWKSRWFFYDERK 37
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 33.4 bits (76), Expect = 0.007
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 74 SGYLEKRTSDQA------RWQTRWFVLYQNKVIAYC 103
G+L K + A ++ R+F L Q +Y
Sbjct: 21 HGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYN 56
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH
domain, signaling protein; 1.70A {Homo sapiens} SCOP:
b.55.1.1
Length = 108
Score = 32.4 bits (74), Expect = 0.008
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 74 SGYLEKRTSDQA----RWQTRWFVLYQNK 98
GYLEK++ D + WQ RW V+ +
Sbjct: 6 QGYLEKKSKDHSFFGSEWQKRWCVVSRGL 34
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM,
artefactual dimerization induced by V derived sequence,
signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1
PDB: 1u5g_A
Length = 148
Score = 32.6 bits (74), Expect = 0.014
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 74 SGYLEKRTSDQA----RWQTRWFVLYQN 97
+GYLEKR D + WQ RW L +
Sbjct: 20 AGYLEKRRKDHSFLGFEWQKRWCALSKT 47
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 107
Score = 32.1 bits (73), Expect = 0.014
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQN 97
S YL + Q W++RW + N
Sbjct: 11 SSYLNVLVNSQ--WKSRWCSVRDN 32
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 32.4 bits (73), Expect = 0.021
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 74 SGYLEKRTSDQA----RWQTRWFVLYQNK 98
+GYLEKR D + WQ RW L +
Sbjct: 109 AGYLEKRRKDHSFLGFEWQKRWCALSKTV 137
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 31.3 bits (71), Expect = 0.026
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 74 SGYLEKRTSDQAR-WQTRWFVLYQNK 98
GYL K++ + WQ R +
Sbjct: 13 KGYLLKKSDGIRKVWQRRKCSVKNGI 38
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 31.5 bits (71), Expect = 0.030
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 73 LSGYLEKRTSDQAR-WQTRWFVLYQNK 98
+ G+L+ ++ + + R+F+L
Sbjct: 17 ICGFLDIEDNENSGKFLRRYFILDTQA 43
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus
norvegicus}
Length = 228
Score = 31.9 bits (72), Expect = 0.032
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 50 QRVVRINDHQLTNLSDRAKYDHSLSGYLEKRTSDQAR-----WQTRWFVLYQNK 98
+R + D + + G+L + W+ RWFVL Q+K
Sbjct: 39 RRWCVLKDETFLWFRSKQEALKQ--GWLHNNGGGSSTLSRRNWKKRWFVLRQSK 90
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 31.0 bits (69), Expect = 0.063
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQN 97
GYL K S R+FVL
Sbjct: 13 VGYLRKPKS----MHKRFFVLRAA 32
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.086
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 19/43 (44%)
Query: 15 KSGIRQLRNSTNFEEIKRYIA-SWHVIGIVMLSPKLQRVVRIN 56
K +++L+ S +K Y S +P L I
Sbjct: 19 KQALKKLQAS-----LKLYADDS---------APALA----IK 43
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 30.1 bits (67), Expect = 0.13
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 75 GYLEKRTSDQ-ARWQTRWFVLYQNKVIAY 102
GY+EK Q ++ RWF + +++ +
Sbjct: 273 GYMEKTGPKQTEGFRKRWFTMDDRRLMYF 301
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 29.1 bits (64), Expect = 0.21
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 73 LSGYLEKRTSDQAR-----WQTRWFVLYQNKVIAY 102
L KR+ + + ++ F+L +K+ Y
Sbjct: 5 LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYY 39
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 28.9 bits (64), Expect = 0.23
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 74 SGYL--EKRTSDQARWQTRWFVLYQNK 98
G+L + S W RW VL N
Sbjct: 8 RGFLTIFEDVSGFGAWHRRWCVLSGNC 34
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 28.9 bits (64), Expect = 0.24
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 73 LSGYLEKRTSDQARWQTRWFVLYQNKVIAY 102
++ +L+ R + ++ W W VL ++ Y
Sbjct: 10 MADWLKIRGTLKS-WTKLWCVLKPGVLLIY 38
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 112
Score = 28.0 bits (62), Expect = 0.47
Identities = 5/27 (18%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 72 SLSGYLEKRTSDQARWQTRWFVLYQNK 98
L G L W W + +
Sbjct: 9 LLCGPLRLS-ESGETWSEVWAAIPMSD 34
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 28.2 bits (62), Expect = 0.58
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 56 NDHQLTNLSDRAKYDHSLSGYLEKRTSDQAR-----WQTRWFVLYQNK 98
+ H ++++ + L L KR+ + + ++ R FVL ++
Sbjct: 4 HHHHHSHMNF----NTILEEILIKRSQQKKKTSPLNYKERLFVLTKSM 47
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 27.4 bits (61), Expect = 1.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 74 SGYLEKRTSDQARWQTRWFVLYQN 97
G+L KR W+ R+F+L +
Sbjct: 9 EGWLHKRGEYIKTWRPRYFLLKND 32
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 25.9 bits (56), Expect = 3.4
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 72 SLSGYLEKRTSDQARWQTRWFVLYQNKVIAYCWSKGT 108
+ G+L + + W+ + L ++ + YC +KGT
Sbjct: 133 EIQGFLHVKELGKKSWKKLYVCLRRSGL--YCSTKGT 167
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 25.4 bits (55), Expect = 4.4
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 73 LSGYLE--KRTSDQAR-WQTRWFVLYQNKVIAY 102
L +L + + ++ W V + + Y
Sbjct: 11 LKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYY 43
>3ci0_J Pseudopilin GSPJ; general secretory pathway, pseudopilus, type 4
pilin biogene methylation, protein transport; 2.20A
{Escherichia coli} SCOP: d.24.1.5
Length = 163
Score = 25.3 bits (55), Expect = 5.3
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 35 ASWHVIGIVMLSPKLQRVV-RINDHQLT----NLSDRAKYDHSLSGYL------EKRTSD 83
+ + L V RI+D L L+D A L + D
Sbjct: 64 GGVVNPLMRLPRSNLLTVGYRIHDGYLERLAWPLTDAAGSVKPTMQKLIPADSLRLQFYD 123
Query: 84 QARWQTRW 91
RWQ W
Sbjct: 124 GTRWQESW 131
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 25.0 bits (54), Expect = 5.9
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 72 SLSGYLEKRTSDQ-------ARWQTRWFVLYQNKVIAY 102
++ G L ++T + + W W VL ++ Y
Sbjct: 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYY 39
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded
alpha/beta barrel, protein-specificity-effector complex,
DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP:
a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Length = 714
Score = 25.3 bits (56), Expect = 6.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 40 IGIVMLSPKLQRVVRINDHQLTNLSDRAKYD 70
I VM SP + R V LT +SD +
Sbjct: 422 IAHVMDSPDIGRTVETAIRGLTAVSDMSHIR 452
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2
function project, S2F, unknown function; 1.60A
{Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Length = 138
Score = 24.8 bits (55), Expect = 7.2
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 18 IRQLRNSTNFEEIKRYIASWHVIGIV 43
I+ + ++ I+R + W I+
Sbjct: 33 IKAQDGTPDWNIIERLLKEWQPDEII 58
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 127
Score = 24.3 bits (52), Expect = 8.8
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 70 DHSLSGYLEKRTSDQA--RWQTRWFVLYQN 97
G+L + +W+ LY
Sbjct: 11 GAVKQGFLYLQQQQTFGKKWRRFGASLYGG 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.133 0.424
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,829,138
Number of extensions: 92595
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 62
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)