BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1357
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDTN 29
++ + D +FLA +MDYSLL+GI D +
Sbjct: 261 LEKLKRDVEFLAQLKIMDYSLLVGIHDVD 289
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 32.7 bits (73), Expect = 0.053, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FL +MDYSLLLGI D
Sbjct: 234 LEKLKRDVEFLVQLKIMDYSLLLGIHD 260
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FLA +MDYSLL+GI D
Sbjct: 245 LEKLKKDVEFLAQLKLMDYSLLVGIHD 271
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 66 PTIVSP-DEYRKRFQSAMNRYFLGVPDRWSGQLGSK 100
P ++SP D R F++ F G+P +G++GS+
Sbjct: 118 PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSR 153
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 66 PTIVSP-DEYRKRFQSAMNRYFLGVPDRWSGQLGSK 100
P ++SP D R F++ F G+P +G++GS+
Sbjct: 118 PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSR 153
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 81 AMNRYFLGVPDRWSGQLGSKGGLLFH 106
A+ RY G P+R + +LG + L FH
Sbjct: 393 AVKRYIFGEPERITSKLGVETHLRFH 418
>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From
Yersinia Pestis
Length = 352
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 78 FQSAMNRYFLGVPDRWSGQLGSKGGLLFHITEGP 111
F+S +RY + RW Q G+ GG+ + + GP
Sbjct: 151 FESHFDRYRPEIRQRWREQAGAGGGIWYDL--GP 182
>pdb|3U1X|A Chain A, Crystal Structure Of A Putative Glycosyl Hydrolase
(Bdi_1869) From Parabacteroides Distasonis Atcc 8503 At
1.70 A Resolution
pdb|3U1X|B Chain B, Crystal Structure Of A Putative Glycosyl Hydrolase
(Bdi_1869) From Parabacteroides Distasonis Atcc 8503 At
1.70 A Resolution
Length = 236
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 92 RWSGQLGSKG--GLLFHITEGPVH 113
+W ++G++G G L+H+ EGP +
Sbjct: 84 KWDWKIGAQGNSGFLYHVQEGPKY 107
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 5 NNDTQFLANQHVMDYSLLLGIDDTNMEL 32
NN+ + Q + DY L G+ D N EL
Sbjct: 42 NNEITYTHEQDLRDYEALNGLKDKNTEL 69
>pdb|4A7K|A Chain A, Bifunctional Aldos-2-Ulose Dehydratase
pdb|4A7Y|A Chain A, Active Site Metal Depleted Aldos-2-Ulose Dehydratase
pdb|4A7Z|A Chain A, Complex Of Bifunctional Aldos-2-ulose Dehydratase With The
Reaction Intermediate Ascopyrone M
Length = 900
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 87 LGVPDRWSGQLGSKGGLLFHITEGPVH 113
+G+ RW+ +KG + F + E P H
Sbjct: 835 MGLTSRWAVTKNTKGQITFRLPEAPDH 861
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 4 INNDTQFLANQHVMDYSLLLGIDDTNMELVV 34
+N T FL N+ DY L LG+ +T+ EL +
Sbjct: 340 LNIQTNFLLNRG--DYELALGVSNTSTELAL 368
>pdb|2AP1|A Chain A, Crystal Structure Of The Putative Regulatory Protein
Length = 327
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 13 NQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIET 51
N + ++ G D ++ +G+ D R W+K++ T
Sbjct: 17 NLYFQSNAMYYGFDIGGTKIALGVFDSTRRLQWEKRVPT 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,071,232
Number of Sequences: 62578
Number of extensions: 92749
Number of successful extensions: 288
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 13
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)