BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1357
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2I7|FYV1_HUMAN 1-phosphatidylinositol 3-phosphate 5-kinase OS=Homo sapiens
GN=PIKFYVE PE=1 SV=3
Length = 2098
Score = 139 bits (351), Expect = 4e-33, Method: Composition-based stats.
Identities = 59/93 (63%), Positives = 80/93 (86%)
Query: 3 AINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQ 62
+I++D+ FL++ ++DYSLL+G DDT+ ELVVG+IDYIRTFTWDKK+E +VK +G+LGGQ
Sbjct: 2001 SIHSDSHFLSSHLIIDYSLLVGRDDTSNELVVGIIDYIRTFTWDKKLEMVVKSTGILGGQ 2060
Query: 63 GKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSG 95
GK+PT+VSP+ YR RF AM++YFL VPD W+G
Sbjct: 2061 GKMPTVVSPELYRTRFCEAMDKYFLMVPDHWTG 2093
>sp|Q9Z1T6|FYV1_MOUSE 1-phosphatidylinositol 3-phosphate 5-kinase OS=Mus musculus
GN=Pikfyve PE=1 SV=3
Length = 2097
Score = 139 bits (350), Expect = 5e-33, Method: Composition-based stats.
Identities = 59/93 (63%), Positives = 79/93 (84%)
Query: 3 AINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQ 62
+I++D FL++ ++DYSLL+G DDT+ ELVVG+IDYIRTFTWDKK+E +VK +G+LGGQ
Sbjct: 2000 SIHSDAHFLSSHLIIDYSLLVGRDDTSNELVVGIIDYIRTFTWDKKLEMVVKSTGILGGQ 2059
Query: 63 GKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSG 95
GK+PT+VSP+ YR RF AM++YFL VPD W+G
Sbjct: 2060 GKMPTVVSPELYRTRFCEAMDKYFLMVPDHWTG 2092
>sp|O96838|FYV1_DROME Putative 1-phosphatidylinositol 3-phosphate 5-kinase OS=Drosophila
melanogaster GN=fab1 PE=1 SV=2
Length = 1809
Score = 129 bits (325), Expect = 4e-30, Method: Composition-based stats.
Identities = 56/93 (60%), Positives = 74/93 (79%)
Query: 3 AINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQ 62
AI D+ FL VMDYSLL+G+D N LV+G+IDYIRTFT DK++E+++K SG+LGG+
Sbjct: 1713 AIQRDSSFLEKNLVMDYSLLVGLDKKNGVLVLGIIDYIRTFTLDKRVESIIKGSGILGGK 1772
Query: 63 GKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSG 95
GK PT+V+P+ Y++RF AM+RYFL VPDRW G
Sbjct: 1773 GKDPTVVNPERYKQRFIDAMDRYFLTVPDRWEG 1805
>sp|P34756|FAB1_YEAST 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3
Length = 2278
Score = 119 bits (298), Expect = 5e-27, Method: Composition-based stats.
Identities = 54/90 (60%), Positives = 69/90 (76%), Gaps = 2/90 (2%)
Query: 6 NDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQG-- 63
NDT FLA +VMDYSL++GID+ L VG+ID+IRTFTWDKK+E+ VK+ GL+GG
Sbjct: 2184 NDTLFLAKMNVMDYSLVIGIDNEGYTLTVGIIDFIRTFTWDKKLESWVKEKGLVGGASVI 2243
Query: 64 KLPTIVSPDEYRKRFQSAMNRYFLGVPDRW 93
K PT+V+P +Y+KRF+ AM RY L VPD W
Sbjct: 2244 KQPTVVTPRQYKKRFREAMERYILMVPDPW 2273
>sp|B0G126|FYV1_DICDI 1-phosphatidylinositol 3-phosphate 5-kinase OS=Dictyostelium
discoideum GN=pip5k3 PE=3 SV=1
Length = 2656
Score = 116 bits (290), Expect = 5e-26, Method: Composition-based stats.
Identities = 51/92 (55%), Positives = 73/92 (79%)
Query: 3 AINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQ 62
A+ NDT FL++ +VMDYSLL GID+ + +LVVG+IDY+R FTWDK +E VK+SG++GG
Sbjct: 2513 AVWNDTAFLSSLNVMDYSLLSGIDNQSNQLVVGIIDYMRKFTWDKALEMKVKQSGIMGGG 2572
Query: 63 GKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWS 94
GK+PT++SP +Y+ RF+ AM YF PD+++
Sbjct: 2573 GKVPTVISPKQYKLRFRDAMWLYFTLSPDKFT 2604
>sp|O59722|FAB1_SCHPO 1-phosphatidylinositol 3-phosphate 5-kinase fab1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fab1 PE=3 SV=2
Length = 1932
Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/91 (53%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 6 NDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKL 65
NDT FL+ ++MDYSL++GID T EL VG+ID+IRT+TWDKK+E+ VK+ GL+ G+G
Sbjct: 1837 NDTLFLSKLNIMDYSLIVGIDYTKKELYVGIIDFIRTYTWDKKLESWVKEKGLV-GRGPE 1895
Query: 66 PTIVSPDEYRKRFQSAMNRYFLGVPDRWSGQ 96
PTIV+P +Y+ RF+ AM+ Y L D +G+
Sbjct: 1896 PTIVTPKQYKNRFRKAMDCYILASQDFETGE 1926
>sp|Q6IQE1|PI42C_DANRE Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma OS=Danio
rerio GN=pip4k2c PE=2 SV=1
Length = 416
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDT 28
M+ +N D +FL +MDYSLLLGI D
Sbjct: 259 MEKLNRDVEFLVKLKIMDYSLLLGIHDV 286
>sp|Q55GN6|Y7588_DICDI Probable phosphatidylinositol phosphate kinase DDB_G0267588
OS=Dictyostelium discoideum GN=DDB_G0267588 PE=1 SV=1
Length = 719
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 27 DTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMN 83
DT +G+ID + ++ KK+E K L G + + VSPDEY +RFQ ++
Sbjct: 661 DTEEHYFLGIIDILMLYSLRKKVEHTYKT--LKFGAKQEISSVSPDEYSERFQEFLS 715
>sp|Q80XI4|PI42B_MOUSE Phosphatidylinositol 5-phosphate 4-kinase type-2 beta OS=Mus
musculus GN=Pip4k2b PE=1 SV=1
Length = 416
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDTN 29
++ + D +FLA +MDYSLL+GI D +
Sbjct: 261 LEKLKRDVEFLAQLKIMDYSLLVGIHDVD 289
>sp|O88377|PI42B_RAT Phosphatidylinositol 5-phosphate 4-kinase type-2 beta OS=Rattus
norvegicus GN=Pip4k2b PE=1 SV=1
Length = 416
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDTN 29
++ + D +FLA +MDYSLL+GI D +
Sbjct: 261 LEKLKRDVEFLAQLKIMDYSLLVGIHDVD 289
>sp|P78356|PI42B_HUMAN Phosphatidylinositol 5-phosphate 4-kinase type-2 beta OS=Homo
sapiens GN=PIP4K2B PE=1 SV=1
Length = 416
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDTN 29
++ + D +FLA +MDYSLL+GI D +
Sbjct: 261 LEKLKRDVEFLAQLKIMDYSLLVGIHDVD 289
>sp|Q56YP2|PI5K1_ARATH Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana
GN=PIP5K1 PE=1 SV=1
Length = 752
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGID--DTNMELVVGMIDYI 40
M+ I D +FL + +MDYSLL+G+ D N +G+ ++
Sbjct: 577 MKQIKRDCEFLEAERIMDYSLLVGVHFRDDNTGEKMGLSPFV 618
>sp|Q8TBX8|PI42C_HUMAN Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma OS=Homo
sapiens GN=PIP4K2C PE=1 SV=3
Length = 421
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FL +MDYSLLLGI D
Sbjct: 263 LEKLKRDVEFLVQLKIMDYSLLLGIHD 289
>sp|Q9R0I8|PI42A_RAT Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Rattus
norvegicus GN=Pip4k2a PE=1 SV=1
Length = 406
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FLA +MDYSLL+GI D
Sbjct: 256 LEKLKKDVEFLAQLKLMDYSLLVGIHD 282
>sp|O70172|PI42A_MOUSE Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Mus
musculus GN=Pip4k2a PE=1 SV=1
Length = 405
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FLA +MDYSLL+GI D
Sbjct: 256 LEKLKKDVEFLAQLKLMDYSLLVGIHD 282
>sp|Q9SLG9|PI5K5_ARATH Phosphatidylinositol 4-phosphate 5-kinase 5 OS=Arabidopsis thaliana
GN=PIP5K5 PE=2 SV=1
Length = 772
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGI 25
++ I+ D +FL + +MDYSLL+GI
Sbjct: 608 IRQIDKDCEFLEQERIMDYSLLVGI 632
>sp|Q00734|VP6_ROTBS Intermediate capsid protein VP6 OS=Rotavirus C (isolate
Cow/Japan/Shintoku/1991) PE=2 SV=1
Length = 395
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 20 SLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVS 70
+ LL +DD ++ G+IDY+ +F + MV+++ G Q + PT+++
Sbjct: 68 TTLLNLDDNYVQSARGIIDYLASFIEAVCDDEMVREASRNGMQPQSPTLIA 118
>sp|Q0P5F7|PI42C_BOVIN Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma OS=Bos
taurus GN=PIP4K2C PE=2 SV=1
Length = 421
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FL +MDYSLLLGI D
Sbjct: 263 LEKLKRDVEFLVQLKIMDYSLLLGIHD 289
>sp|Q5R488|PI42C_PONAB Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma OS=Pongo
abelii GN=PIP4K2C PE=2 SV=1
Length = 421
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FL +MDYSLLLGI D
Sbjct: 263 LEKLKRDVEFLVQLKIMDYSLLLGIHD 289
>sp|Q91XU3|PI42C_MOUSE Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma OS=Mus
musculus GN=Pip4k2c PE=2 SV=1
Length = 421
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FL +MDYSLLLGI D
Sbjct: 263 LEKLKRDVEFLVQLKIMDYSLLLGIHD 289
>sp|O88370|PI42C_RAT Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma OS=Rattus
norvegicus GN=Pip4k2c PE=1 SV=1
Length = 420
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FL +MDYSLLLGI D
Sbjct: 263 LEKLKRDVEFLVQLKIMDYSLLLGIHD 289
>sp|Q8L796|PI5K2_ARATH Phosphatidylinositol 4-phosphate 5-kinase 2 OS=Arabidopsis thaliana
GN=PIP5K2 PE=1 SV=2
Length = 754
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGI 25
M I D +FL + +MDYSLL+G+
Sbjct: 579 MTQIKRDCEFLEAERIMDYSLLVGV 603
>sp|Q9M1K2|PI5K4_ARATH Phosphatidylinositol 4-phosphate 5-kinase 4 OS=Arabidopsis thaliana
GN=PIP5K4 PE=1 SV=1
Length = 779
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGI 25
++ ++ D +FL + +MDYSLL+GI
Sbjct: 615 IRQVDKDCEFLEQERIMDYSLLVGI 639
>sp|P48426|PI42A_HUMAN Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Homo
sapiens GN=PIP4K2A PE=1 SV=2
Length = 406
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FLA +MDYSLL+GI D
Sbjct: 256 LEKLKKDVEFLAQLKLMDYSLLVGIHD 282
>sp|Q5F356|PI42A_CHICK Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Gallus
gallus GN=PIP4K2A PE=2 SV=1
Length = 405
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FLA +MDYSLL+GI D
Sbjct: 255 LEKLKKDVEFLAQLKLMDYSLLVGIHD 281
>sp|O13010|PI42A_PIG Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Sus
scrofa GN=PIP4K2A PE=2 SV=1
Length = 406
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD 27
++ + D +FLA +MDYSLL+GI D
Sbjct: 256 LEKLKKDVEFLAQLKLMDYSLLVGIHD 282
>sp|Q8L850|PI5K9_ARATH Phosphatidylinositol 4-phosphate 5-kinase 9 OS=Arabidopsis thaliana
GN=PIP5K9 PE=1 SV=2
Length = 815
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGI 25
++ + D++FL Q++MDYSLLLG+
Sbjct: 616 LRQLEIDSKFLEAQNIMDYSLLLGV 640
>sp|P70182|PI51A_MOUSE Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha OS=Mus
musculus GN=Pip5k1a PE=1 SV=2
Length = 546
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 32 LVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAM-NRYFLGVP 90
L +G+ID ++++ + KK+E K L G ++ P Y +RFQ M N F +P
Sbjct: 383 LYIGIIDILQSYRFVKKLEHSWKA---LVHDGDTVSVHRPGFYAERFQRFMCNTVFKKIP 439
Query: 91 DRWSGQLGSKGGLLFHITEGP 111
+ S + G F GP
Sbjct: 440 LKPSPTKKFRSGPSFSRRSGP 460
>sp|Q9SFB8|PI5K6_ARATH Phosphatidylinositol 4-phosphate 5-kinase 6 OS=Arabidopsis thaliana
GN=PIP5K6 PE=2 SV=1
Length = 715
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGI 25
+ ++ D +FL + +MDYSLL+G+
Sbjct: 554 CRQVDRDCEFLEQERIMDYSLLVGL 578
>sp|Q87K98|MNMG_VIBPA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=mnmG PE=3 SV=1
Length = 631
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 18 DYSLLLGIDDTNMELV-----VGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPD 72
+Y LLL D+ ++ L +G+ID +R +++KIE M + L P D
Sbjct: 434 EYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLKSTWVNPNSAGID 493
Query: 73 EYRKRFQSAMNRYFLG 88
E K ++ M R G
Sbjct: 494 ELNKLLKTPMAREASG 509
>sp|P38994|MSS4_YEAST Probable phosphatidylinositol 4-phosphate 5-kinase MSS4
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MSS4 PE=1 SV=2
Length = 779
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDTN 29
+ + D + LA + MDYSLL+GI D N
Sbjct: 619 LTQLKKDVELLAKLNTMDYSLLIGIHDIN 647
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 26 DDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRF 78
+D ++ VG+ID++ ++ KK+ET + L KL + + P +Y RF
Sbjct: 699 NDVDLIYYVGIIDFLTNYSVMKKLETFWRS---LRHDTKLVSAIPPRDYANRF 748
>sp|Q5PQ01|PI42C_XENLA Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma OS=Xenopus
laevis GN=pip4k2c PE=2 SV=1
Length = 419
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDT 28
M+ + D FL +MDYSLLLGI +
Sbjct: 267 MEKLKRDVDFLVQLKLMDYSLLLGIHEV 294
>sp|Q6GL14|PI42C_XENTR Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma OS=Xenopus
tropicalis GN=pip4k2c PE=2 SV=1
Length = 419
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDT 28
M+ + D FL +MDYSLLLGI +
Sbjct: 267 MEKLKRDVDFLVQLKLMDYSLLLGIHEV 294
>sp|P30332|RP54_BRAJA RNA polymerase sigma-54 factor 1 OS=Bradyrhizobium japonicum
(strain USDA 110) GN=rpoN1 PE=2 SV=1
Length = 484
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLG 60
MQA+ LA + + L G+DD E + MID +R + K G+
Sbjct: 204 MQALVEHLDLLAKRDIASLRKLCGVDD---EDIADMIDELRRLS---------PKPGMKF 251
Query: 61 GQGKLPTIVSPDEY 74
G +L T+V PD Y
Sbjct: 252 GSARLQTMV-PDVY 264
>sp|Q91Z98|CH3L4_MOUSE Chitinase-3-like protein 4 OS=Mus musculus GN=Chi3l4 PE=1 SV=2
Length = 402
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 5 NNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGK 64
NN+ +L+ Q + DY L G+ D N EL +T++ G G
Sbjct: 63 NNEITYLSEQDLRDYEALNGLKDRNTEL-----------------KTLLAIGGWKFGPAP 105
Query: 65 LPTIVSPDEYRKRFQSAMNRYF 86
++VS + R+ F ++ R+
Sbjct: 106 FSSMVSTPQNRQTFIKSVIRFL 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,473,538
Number of Sequences: 539616
Number of extensions: 1735120
Number of successful extensions: 3248
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3196
Number of HSP's gapped (non-prelim): 55
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)