Query psy1357
Match_columns 113
No_of_seqs 108 out of 571
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:35:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 100.0 1.6E-31 5.5E-36 218.7 5.3 84 1-86 245-394 (394)
2 2gk9_A Phosphatidylinositol-4- 100.0 2.7E-31 9.3E-36 217.1 2.5 85 1-87 234-392 (392)
3 4eef_G F-HB80.4, designed hema 35.2 23 0.0008 22.3 2.2 30 73-102 26-55 (74)
4 2kvo_A Photosystem II reaction 33.5 17 0.00057 25.0 1.4 26 69-94 84-109 (120)
5 1x8d_A Hypothetical protein YI 18.6 70 0.0024 20.8 2.3 60 9-92 31-90 (104)
6 1hgv_A PH75 inovirus major coa 18.2 20 0.00068 20.3 -0.5 9 72-80 37-45 (46)
7 3ajm_A Programmed cell death p 15.4 68 0.0023 24.0 1.7 16 73-88 162-177 (213)
8 3e11_A Predicted zincin-like m 13.4 1.6E+02 0.0056 19.3 3.1 32 75-109 7-38 (114)
9 1zrx_A Stomoxyn; helical pepti 13.2 71 0.0024 17.6 1.0 12 74-85 3-14 (42)
10 2cki_A Ulilysin; metalloprotea 12.9 54 0.0019 24.7 0.6 8 14-21 227-234 (262)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=99.97 E-value=1.6e-31 Score=218.68 Aligned_cols=84 Identities=30% Similarity=0.538 Sum_probs=60.0
Q ss_pred ChhHHHHHhhhhcCCccccceeEEEecC----------------------------------------------------
Q psy1357 1 MQAINNDTQFLANQHVMDYSLLLGIDDT---------------------------------------------------- 28 (113)
Q Consensus 1 m~~L~~D~~FL~~~~imDYSLLvgi~~~---------------------------------------------------- 28 (113)
++||++||+||+++||||||||||||..
T Consensus 245 ~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 324 (394)
T 2ybx_A 245 LEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTHPVGTPPDSPGNTLNSSPPLAPGEFDPN 324 (394)
T ss_dssp HHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHCC--------------------------------CCCTTCCCTT
T ss_pred HHHHHHHHHHHHHCCCccceeEEEEecccccchhhccccccccccccccccccccCCCcccccccccccccccccccccc
Confidence 4799999999999999999999999862
Q ss_pred --------------CCeEEEEEeeccccCChhHHHHHHHHHhhhcCCCCCCceeeChhhHHHHHHHHHhhhc
Q psy1357 29 --------------NMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYF 86 (113)
Q Consensus 29 --------------~~~y~~GIID~L~~y~~~KklE~~~K~~~~~~~~~~~iS~v~P~~Y~~RF~~~~~~~f 86 (113)
+.+||+|||||||+|||.|++|+++|+. .++ .+.+||||+|++|++||++||.++|
T Consensus 325 ~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~~~Ks~-~~~-~~~~iS~V~P~~Y~~RF~~fm~~if 394 (394)
T 2ybx_A 325 IDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTV-KHG-AGAEISTVNPEQYSKRFLDFIGHIL 394 (394)
T ss_dssp TSTTEEECCTTCSSCEEEEEEEECCCEESCC---------------------CCCCHHHHHHHHHHHHHHHC
T ss_pred ccccccccccCCCCceEEEEEEEEeeecCChhHHHHHHHHHh-ccC-CCCCCceECHHHHHHHHHHHHHHhC
Confidence 1269999999999999999999999996 343 3467999999999999999999986
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.7e-31 Score=217.15 Aligned_cols=85 Identities=33% Similarity=0.568 Sum_probs=49.3
Q ss_pred ChhHHHHHhhhhcCCccccceeEEEecCC---------------------------------------------------
Q psy1357 1 MQAINNDTQFLANQHVMDYSLLLGIDDTN--------------------------------------------------- 29 (113)
Q Consensus 1 m~~L~~D~~FL~~~~imDYSLLvgi~~~~--------------------------------------------------- 29 (113)
++||++||+||+++||||||||||||..+
T Consensus 234 ~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 313 (392)
T 2gk9_A 234 LEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPALVGSYGTSPEGIGGYIHSHRPL 313 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCCCEECCCBCC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCccceeEEeeecccccccccccccccccccccccccccccccccccccCCCcccccccccccccc
Confidence 47999999999999999999999998631
Q ss_pred -----------------------CeEEEEEeeccccCChhHHHHHHHHHhhhcCCCCCCceeeChhhHHHHHHHHHhhhc
Q psy1357 30 -----------------------MELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYF 86 (113)
Q Consensus 30 -----------------------~~y~~GIID~L~~y~~~KklE~~~K~~~~~~~~~~~iS~v~P~~Y~~RF~~~~~~~f 86 (113)
.+||+|||||||+||+.|++||++|+. .++ .+.+||||+|++|++||++||.++|
T Consensus 314 ~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks~-~~~-~~~~iS~v~P~~Y~~RF~~fm~~~~ 391 (392)
T 2gk9_A 314 GPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTV-KHG-AGAEISTVHPEQYAKRFLDFITNIF 391 (392)
T ss_dssp -----------------------CBCCCEECCCC-----------------------------CHHHHHHHHHHHTC---
T ss_pred cccccccccccccccccccCCCceEEEEEEEEeeeeCChhHHHHHHHHHh-ccC-CCCCCceECHHHHHHHHHHHHHHhh
Confidence 148999999999999999999999996 343 3467999999999999999999987
Q ss_pred c
Q psy1357 87 L 87 (113)
Q Consensus 87 ~ 87 (113)
.
T Consensus 392 ~ 392 (392)
T 2gk9_A 392 A 392 (392)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=35.24 E-value=23 Score=22.33 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhhhccCCCCCccccCcCCCc
Q psy1357 73 EYRKRFQSAMNRYFLGVPDRWSGQLGSKGG 102 (113)
Q Consensus 73 ~Y~~RF~~~~~~~f~~~p~~~~~~~~~~~~ 102 (113)
+=-+.|.+++..+=...|++|.++...-.|
T Consensus 26 eE~K~FE~ALa~yp~~tpdRWekIA~~VpG 55 (74)
T 4eef_G 26 SENIAFEIALSFTNKDTPDRWKKVAQYVKG 55 (74)
T ss_dssp THHHHHHHHTSSSCSSCCSSSTTTGGGSCS
T ss_pred HHHHHHHHHHHHCCCCCCcHHHHHHHHcCC
Confidence 346789999988866789999999865544
No 4
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=33.49 E-value=17 Score=25.05 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=17.3
Q ss_pred eChhhHHHHHHHHHhhhccCCCCCcc
Q psy1357 69 VSPDEYRKRFQSAMNRYFLGVPDRWS 94 (113)
Q Consensus 69 v~P~~Y~~RF~~~~~~~f~~~p~~~~ 94 (113)
+...+=-+||++||++|-...--.|+
T Consensus 84 m~s~~~WdRFMRFMeRYA~~Ngl~f~ 109 (120)
T 2kvo_A 84 LNSQPEWDRFMRFMERYGAENGLGFS 109 (120)
T ss_dssp ECSSHHHHHHHHHHHHHHHHCCSSSC
T ss_pred ECCHHHHHHHHHHHHHHHHhcCCccc
Confidence 44555679999999999544333333
No 5
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=18.58 E-value=70 Score=20.77 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=37.0
Q ss_pred hhhhcCCccccceeEEEecCCCeEEEEEeeccccCChhHHHHHHHHHhhhcCCCCCCceeeChhhHHHHHHHHHhhhccC
Q psy1357 9 QFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYFLG 88 (113)
Q Consensus 9 ~FL~~~~imDYSLLvgi~~~~~~y~~GIID~L~~y~~~KklE~~~K~~~~~~~~~~~iS~v~P~~Y~~RF~~~~~~~f~~ 88 (113)
+-|.+.||-|||+.+- .+.-+-+|++.+=- +...... . -+| =.+|--..|..++..
T Consensus 31 ~~L~~aGi~~ysIfl~---~~~~~LF~~~E~~d--------~~~~~~~---a--------~~p--~~q~W~~~M~~~~~~ 86 (104)
T 1x8d_A 31 AVLKSHGAHNYAIYLD---KARNLLFAMVEIES--------EERWNAV---A--------STD--VCQRWWKYMTDVMPA 86 (104)
T ss_dssp HHHHHTTEEEEEEEEE---TTTTEEEEEEEESC--------HHHHHHG---G--------GSH--HHHHHHHHHTTTSCB
T ss_pred HHHHHcCCeEEEEEEE---CCCCeEEEEEEEcC--------HHhHHhc---c--------CCh--HHHHHHHHHHHHhcc
Confidence 4688999999999873 33346788877632 1222221 0 122 246777888888777
Q ss_pred CCCC
Q psy1357 89 VPDR 92 (113)
Q Consensus 89 ~p~~ 92 (113)
.|+.
T Consensus 87 ~p~~ 90 (104)
T 1x8d_A 87 NPDN 90 (104)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 7643
No 6
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=18.19 E-value=20 Score=20.33 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=6.4
Q ss_pred hhHHHHHHH
Q psy1357 72 DEYRKRFQS 80 (113)
Q Consensus 72 ~~Y~~RF~~ 80 (113)
-.|++||++
T Consensus 37 w~ya~rflk 45 (46)
T 1hgv_A 37 WKYAKRFLK 45 (46)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 468888864
No 7
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=15.37 E-value=68 Score=24.00 Aligned_cols=16 Identities=31% Similarity=0.756 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhhhccC
Q psy1357 73 EYRKRFQSAMNRYFLG 88 (113)
Q Consensus 73 ~Y~~RF~~~~~~~f~~ 88 (113)
.|.+||.+.++.||..
T Consensus 162 kySKrFS~TLKeYFkd 177 (213)
T 3ajm_A 162 KYSKSFSDTLKTYFKD 177 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHhhHHHHHHHhc
Confidence 4999999999999984
No 8
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=13.43 E-value=1.6e+02 Score=19.32 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=24.2
Q ss_pred HHHHHHHHhhhccCCCCCccccCcCCCceEEEeec
Q psy1357 75 RKRFQSAMNRYFLGVPDRWSGQLGSKGGLLFHITE 109 (113)
Q Consensus 75 ~~RF~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~ 109 (113)
+++|...+...+..+|++|.+. =.++.|-+.+
T Consensus 7 ~e~Fd~lv~~a~~~Lp~~~~~~---l~~v~i~Ved 38 (114)
T 3e11_A 7 PDRFDELVAEALDGIPEEFARA---MRNVAVFVED 38 (114)
T ss_dssp HHHHHHHHHHHHHTSCGGGTGG---GTTEEEEEES
T ss_pred HHHHHHHHHHHHHHhhHHHHHH---cCCcEEEEeC
Confidence 5789999999999999999765 3455555543
No 9
>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic}
Probab=13.17 E-value=71 Score=17.61 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhh
Q psy1357 74 YRKRFQSAMNRY 85 (113)
Q Consensus 74 Y~~RF~~~~~~~ 85 (113)
+++||.+++.++
T Consensus 3 frk~fn~~ikki 14 (42)
T 1zrx_A 3 FRKHFNKLVKKV 14 (42)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578888888775
No 10
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=12.88 E-value=54 Score=24.71 Aligned_cols=8 Identities=38% Similarity=0.455 Sum_probs=7.0
Q ss_pred CCccccce
Q psy1357 14 QHVMDYSL 21 (113)
Q Consensus 14 ~~imDYSL 21 (113)
+|+||||-
T Consensus 227 ~N~MdYs~ 234 (262)
T 2cki_A 227 MNYMDYVD 234 (262)
T ss_dssp TBTTSCCC
T ss_pred ccceecCC
Confidence 79999994
Done!