RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1357
(113 letters)
>gnl|CDD|238081 cd00139, PIPKc, Phosphatidylinositol phosphate kinases (PIPK)
catalyze the phosphorylation of phosphatidylinositol
phosphate on the fourth or fifth hydroxyl of the
inositol ring, to form phosphatidylinositol
bisphosphate. CD alignment includes type II
phosphatidylinositol phosphate kinases (PIPKII-beta),
type I andII PIPK (-alpha, -beta, and -gamma) kinases
and related yeast Fab1p and Mss4p kinases. Signaling by
phosphorylated species of phosphatidylinositol regulates
secretion, vesicular trafficking, membrane
translocation, cell adhesion, chemotaxis, DNA synthesis,
and cell cycling. The catalytic core domains of PIPKs
are structurally similar to PI3K, PI4K, and
cAMP-dependent protein kinases (PKA), the dimerization
region is a unique feature of the PIPKs.
Length = 313
Score = 128 bits (325), Expect = 8e-38
Identities = 43/87 (49%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLG 60
+ I D +FL + ++MDYSLL+GI D + L +G+ID +RT+TWDKK+E VK G G
Sbjct: 229 LTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSLGHDG 288
Query: 61 GQGKLPTIVSPDEYRKRFQSAMNRYFL 87
GK P++VSP++Y KRF+ M++YFL
Sbjct: 289 --GKTPSVVSPEQYAKRFREFMDKYFL 313
>gnl|CDD|216538 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase. This
family contains a region from the common kinase core
found in the type I phosphatidylinositol-4-phosphate
5-kinase (PIP5K) family as described in. The family
consists of various type I, II and III PIP5K enzymes.
PIP5K catalyzes the formation of
phosphoinositol-4,5-bisphosphate via the phosphorylation
of phosphatidylinositol-4-phosphate a precursor in the
phosphinositide signaling pathway.
Length = 255
Score = 108 bits (272), Expect = 2e-30
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 32/116 (27%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDD------------------------------TNM 30
++ + D +FL + ++MDYSLL+GI N
Sbjct: 142 LEQLKRDCEFLESLNIMDYSLLVGIHRVEDEDSEEGAAEASGEFDLDEGGIRAGDDPENE 201
Query: 31 ELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYF 86
+G+ID + +TWDKK+E VK L G+ +IV P EY KRF + +YF
Sbjct: 202 IYYIGIIDILTPYTWDKKLEHFVKSLLYLDGKT--ISIVPPKEYAKRFLKFIEKYF 255
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
transduction mechanisms].
Length = 612
Score = 91.5 bits (227), Expect = 6e-23
Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 4 INNDTQFLANQHVMDYSLLLGIDDTNMELVVGMI-DYIRT-FTWDKKIETMVKKSGLLGG 61
+ ND FL+ ++MDYSLL+GIDD E VG+I D+IRT T DKK+E+ +K +G
Sbjct: 510 VWNDVLFLSKLNIMDYSLLVGIDDEREEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGS 569
Query: 62 --QGKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSGQL 97
+ K PT V+P +Y+ RF+ AM Y PD+ + +
Sbjct: 570 FTKRKEPTAVTPRQYKNRFRKAMEAYIDPFPDKKTQEG 607
>gnl|CDD|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases.
Length = 342
Score = 75.5 bits (186), Expect = 2e-17
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 24 GIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMN 83
I + L +G+ID ++T+TWDKK+E VK G GK ++V P++Y KRF+ M+
Sbjct: 283 AIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGHD---GKTISVVHPEQYAKRFRDFMD 339
Query: 84 RYF 86
+YF
Sbjct: 340 KYF 342
Score = 47.8 bits (114), Expect = 1e-07
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGIDDTN 29
++ I D +FL + +MDYSLL+GI D
Sbjct: 200 LKQIKRDCEFLESLKIMDYSLLVGIHDIE 228
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 37.5 bits (87), Expect = 6e-04
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 1 MQAINNDTQFLANQHVMDYSLLLGI 25
++ I D++FL Q +MDYSLLLG+
Sbjct: 569 LRQIEIDSKFLEAQRIMDYSLLLGV 593
>gnl|CDD|133135 cd06604, GH31_glucosidase_II_MalA, Alpha-glucosidase II
(alpha-D-glucoside glucohydrolase) is a glycosyl
hydrolase family 31 (GH31) enzyme, found in bacteria
and plants, which has exo-alpha-1,4-glucosidase and
oligo-1,6-glucosidase activities. Alpha-glucosidase II
has been characterized in Bacillus
thermoamyloliquefaciens where it forms a homohexamer.
This family also includes the MalA alpha-glucosidase
from Sulfolobus sulfataricus and the AglA
alpha-glucosidase from Picrophilus torridus. MalA is
part of the carbohydrate-metabolizing machinery that
allows this organism to utilize carbohydrates, such as
maltose, as the sole carbon and energy source.
Length = 339
Score = 27.5 bits (62), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 11/43 (25%)
Query: 37 IDYI---RTFTWDKK----IETMVKKSGLLGGQG-KLPTIVSP 71
IDY+ R FTWDK+ + ++K+ L QG K+ TI+ P
Sbjct: 47 IDYMDGYRVFTWDKERFPDPKELIKE---LHEQGFKVVTIIDP 86
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 27.0 bits (60), Expect = 2.5
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 10/45 (22%)
Query: 39 YIRTFTWDKKIETMV------KKSGLLGGQGKLPTIVSPDEYRKR 77
Y +TF W + + +GL G T PD Y K
Sbjct: 120 YYKTFMWPAAFWWKIYEPFIRRAAGL----GVADTETDPDTYDKV 160
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 26.7 bits (59), Expect = 3.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 79 QSAMNRYFLGVPDRWSGQLGS 99
QSAM + V RWS QL S
Sbjct: 14 QSAMMKRSDSVSKRWSAQLPS 34
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 26.3 bits (58), Expect = 3.3
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 15 HVMDYSLLLGIDD------TNMELVVGMIDYIRTFTWDKKIET 51
++ S D G+++Y+ D +
Sbjct: 159 KLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKLLDDLEKK 201
>gnl|CDD|233882 TIGR02474, pec_lyase, pectate lyase, PelA/Pel-15E family. Members
of this family are isozymes of pectate lyase (EC
4.2.2.2), also called polygalacturonic transeliminase
and alpha-1,4-D-endopolygalacturonic acid lyase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 290
Score = 26.3 bits (58), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 61 GQGKLPTIVSPDEYRKRFQSAMNR 84
GK P V PD R R ++A+ +
Sbjct: 118 ANGKDPFDVFPDSTRTRAKTAVTK 141
>gnl|CDD|177943 PLN02308, PLN02308, endoglucanase.
Length = 492
Score = 26.4 bits (58), Expect = 3.9
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 31 ELVVGMIDYIRTFTWDKK---IETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYFL 87
E+++G D I F WD K I ++ K L+G EY + F+ + +
Sbjct: 263 EVILGAGDTINEFGWDNKHAGINVLISKEVLMG----------KAEYFQSFKQNADGFIC 312
Query: 88 GV-PDRWSGQLG-SKGGLLF 105
+ P Q+ S GGLLF
Sbjct: 313 SLLPGISHPQVQYSPGGLLF 332
>gnl|CDD|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl
tRNA synthetases. This domain is found in cysteinyl
tRNA synthetases (CysRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. CysRS catalyzes the
transfer of cysteine to the 3'-end of its tRNA.
Length = 156
Score = 26.0 bits (58), Expect = 4.2
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 62 QGKLPTIVSPDEYRKRFQSAMN 83
I + + +RF +AM+
Sbjct: 22 PPTTVDIDWGEPFAERFIAAMD 43
>gnl|CDD|225775 COG3235, COG3235, Predicted membrane protein [Function unknown].
Length = 223
Score = 26.0 bits (57), Expect = 4.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 71 PDEYR--KRFQSAMNRYFLGVPDRWSGQLGSKGGLLFHI 107
P +R R+Q + LG+ W + GGL +H
Sbjct: 29 PSAFRSDARYQHLLPLCMLGLFLLWCLNASAGGGLSYHF 67
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 25.9 bits (57), Expect = 5.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 57 GLLGGQGKLPTIV 69
GL+G Q + PTIV
Sbjct: 671 GLMGRQNRTPTIV 683
>gnl|CDD|113458 pfam04690, YABBY, YABBY protein. YABBY proteins are a group of
plant-specific transcription involved in the
specification of abaxial polarity in lateral organs.
Length = 170
Score = 25.6 bits (56), Expect = 6.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 64 KLPTIVSPDEYRKRFQSAMNRY 85
++P + P E R+R SA NR+
Sbjct: 111 RVPPVNRPPEKRQRVPSAYNRF 132
>gnl|CDD|187707 cd09611, Jacalin_ZG16_like, Jacalin-like lectin domain of the
zymogen granule protein 16 and related proteins. ZG16p
is a conserved secreted vertebrate protein with
tissue-specific expression profiles, which might play a
role in glycoprotein secretion, perhaps as a linker
protein that participates in the formation and/or
transport of the zymogen granule. Its paralog ZG16b
(PAUF) has been associated with roles in gene regulation
and cancer. This domain family also contains mammalian
proteins labelled as prostatic spermine-binding protein
(SBP) and salivary-gland specific secreted proteins.
Length = 128
Score = 25.0 bits (55), Expect = 7.1
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 91 DRWSGQLGSKGGLLFHITEGP 111
WS G +GG I P
Sbjct: 39 SNWSDVYGGRGGNEQEIVLEP 59
>gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 304
Score = 25.3 bits (56), Expect = 7.4
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 11/32 (34%)
Query: 67 TIVSPDEYRKRFQSAMNRYFLGVPDRWSGQLG 98
T+VSPD R R V ++W+ +LG
Sbjct: 151 TVVSPDAGRVR-----------VAEQWADRLG 171
>gnl|CDD|133134 cd06603, GH31_GANC_GANAB_alpha, This family includes the closely
related glycosyl hydrolase family 31 (GH31) isozymes,
neutral alpha-glucosidase C (GANC) and the alpha
subunit of heterodimeric neutral alpha-glucosidase AB
(GANAB). Initially distinguished on the basis of
differences in electrophoretic mobility in starch gel,
GANC and GANAB have been shown to have other
differences, including those of substrate specificity.
GANC and GANAB are key enzymes in glycogen metabolism
that hydrolyze terminal, non-reducing 1,4-linked
alpha-D-glucose residues from glycogen in the
endoplasmic reticulum. The GANC/GANAB family includes
the alpha-glucosidase II (ModA) from Dictyostelium
discoideum as well as the alpha-glucosidase II (GLS2,
or ROT2 - Reversal of TOR2 lethality protein 2) from
Saccharomyces cerevisiae.
Length = 339
Score = 25.6 bits (57), Expect = 7.5
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 11/43 (25%)
Query: 37 IDYI---RTFTWDKK----IETMVKKSGLLGGQG-KLPTIVSP 71
I++ R FTWDKK E M +K L +G KL TIV P
Sbjct: 47 IEHTDGKRYFTWDKKKFPDPEKMQEK---LASKGRKLVTIVDP 86
>gnl|CDD|232783 TIGR00016, ackA, acetate kinase. Acetate kinase is involved in the
activation of acetate to acetyl CoA and in the secretion
of acetate. It catalyzes the reaction ATP + acetate =
ADP + acetyl phosphate. Some members of this family have
been shown to act on propionate as well as acetate. An
example of a propionate/acetate kinase is TdcD of E.
coli, an enzyme of an anaerobic pathway of threonine
catabolism. It is not known how many members of this
family act on additional substrates besides acetate
[Energy metabolism, Fermentation].
Length = 404
Score = 25.5 bits (56), Expect = 7.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 50 ETMVKKSGLLGGQGK---LPTIV-SPDEYRKRFQSAMNRY 85
T+ KKSGLLG G L I + E ++ + A+ Y
Sbjct: 270 NTLNKKSGLLGISGLSSDLRDIEDAYAEGNEQAKLAIKVY 309
>gnl|CDD|131303 TIGR02249, integrase_gron, integron integrase. Members of this
family are integrases associated with integrons (and
super-integrons), which are systems for incorporating
and expressing cassettes of laterally transferred DNA.
Incorporation occurs at an attI site. A super-integron,
as in Vibrio sp., may include over 100 cassettes. This
family belongs to the phage integrase family (pfam00589)
that also includes recombinases XerC (TIGR02224) and
XerD (TIGR02225), which are bacterial housekeeping
proteins. Within this family of integron integrases,
some are designated by class, e.g. IntI4, a class 4
integron integrase from Vibrio cholerae N16961 [DNA
metabolism, DNA replication, recombination, and repair,
Mobile and extrachromosomal element functions, Other].
Length = 315
Score = 25.0 bits (55), Expect = 9.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 64 KLPTIVSPDEYRKRFQSAMNRYFL 87
KLP +++ +E R+ + +Y L
Sbjct: 97 KLPVVLTREEVRRLLEHLEGKYRL 120
>gnl|CDD|214858 smart00854, PGA_cap, Bacterial capsule synthesis protein PGA_cap.
This protein is a putative poly-gamma-glutamate
capsule biosynthesis protein found in bacteria.
Poly-gamma-glutamate is a natural polymer that may be
involved in virulence and may help bacteria survive in
high salt concentrations. It is a surface-associated
protein.
Length = 239
Score = 24.9 bits (55), Expect = 9.9
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 11 LANQHVMDYSLLLGIDDT 28
LAN H +DY G+ DT
Sbjct: 79 LANNHSLDY-GEEGLLDT 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.422
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,911,831
Number of extensions: 516083
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 34
Length of query: 113
Length of database: 10,937,602
Length adjustment: 77
Effective length of query: 36
Effective length of database: 7,522,344
Effective search space: 270804384
Effective search space used: 270804384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)