RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1357
         (113 letters)



>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma;
           phosphoinositide, structural genomics, structural
           genomics consortium, SGC, transferase; 2.80A {Homo
           sapiens}
          Length = 392

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 27  DTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYF 86
                  +G+ID +  +   KK     K   +  G G   + V P++Y KRF   +   F
Sbjct: 334 PQKEVYFMGLIDILTQYDAKKKAAHAAK--TVKHGAGAEISTVHPEQYAKRFLDFITNIF 391



 Score = 32.2 bits (72), Expect = 0.025
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 1   MQAINNDTQFLANQHVMDYSLLLGIDDTN 29
           ++ +  D +FL    +MDYSLLLGI D  
Sbjct: 234 LEKLKRDVEFLVQLKIMDYSLLLGIHDII 262


>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase,
           signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
          Length = 394

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 26  DDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRY 85
                   + +I  +  +   KK     K   +  G G   + V+P++Y KRF   +   
Sbjct: 336 SPRKEVYFMAIIXILTHYDAKKKAAHAAK--TVKHGAGAEISTVNPEQYSKRFLDFIGHI 393

Query: 86  F 86
            
Sbjct: 394 L 394



 Score = 33.3 bits (75), Expect = 0.009
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 1   MQAINNDTQFLANQHVMDYSLLLGIDDTNM 30
           ++ +  D +FLA   +MDYSLL+GI D   
Sbjct: 245 LEKLKKDVEFLAQLKLMDYSLLVGIHDVER 274


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 26/71 (36%)

Query: 32  LVVGMI-DYIRTF--TWD-------KKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSA 81
             + +I + IR    TWD        K+ T+++ S        L  ++ P EYRK F   
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--------L-NVLEPAEYRKMFDR- 377

Query: 82  MNRYFLGV-PD 91
                L V P 
Sbjct: 378 -----LSVFPP 383



 Score = 29.4 bits (65), Expect = 0.22
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 19/76 (25%)

Query: 23  LGI--DDTN-MELVVGMIDYIRTFTWDKKIET--------MVKKSGLLGGQGKLPTIVSP 71
           L +     +   +++ +I       W   I++        + K S L+  Q K  TI  P
Sbjct: 378 LSVFPPSAHIPTILLSLI-------WFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIP 429

Query: 72  DEYRKRFQSAMNRYFL 87
             Y +      N Y L
Sbjct: 430 SIYLELKVKLENEYAL 445


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.005
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 28/95 (29%)

Query: 7   DTQFLANQ--HVMDYSLLLGIDDTNMELVVGMI-DYIRTFTWDKKIETMVKKSGLL---- 59
           +  +L     H +   LL   +DT +     +I +YI      K+       S L     
Sbjct: 92  ENCYLEGNDIHALAAKLL-QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150

Query: 60  ----------GGQGKLPTIVSPDEY----RKRFQS 80
                     GGQG      + D+Y    R  +Q+
Sbjct: 151 EGNAQLVAIFGGQG------NTDDYFEELRDLYQT 179


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.23
 Identities = 4/16 (25%), Positives = 8/16 (50%), Gaps = 3/16 (18%)

Query: 76 KRFQSAMNRYFLGVPD 91
          K+ Q+++  Y     D
Sbjct: 23 KKLQASLKLY---ADD 35


>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein
          structure initiative, northeast structural genomics
          consortium, NESG; 2.60A {Shigella flexneri}
          Length = 455

 Score = 28.8 bits (64), Expect = 0.41
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 65 LPTIVSPDEYRKRFQSAMNR-YFLGVP 90
          +   ++ DE R++F  AM+  Y   VP
Sbjct: 1  MANSITADEIREQFSQAMSAMYQQEVP 27


>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin,
          fusion of virus membrane with membrane, membrane
          fusion, sialic acid, virion; HET: NAG BMA; 2.70A
          {Artificial gene}
          Length = 74

 Score = 26.0 bits (57), Expect = 1.2
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 76 KRFQSAMNRYFLGVPDRW 93
            F+ A++      PDRW
Sbjct: 29 IAFEIALSFTNKDTPDRW 46


>2cjj_A Radialis; plant development, DNA-binding protein, MYB
          transcription FA DNA-binding, nuclear protein, floral
          asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
          Length = 93

 Score = 26.0 bits (57), Expect = 1.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 76 KRFQSAMNRYFLGVPDRW 93
          K F+ A+  Y    PDRW
Sbjct: 17 KAFERALAVYDKDTPDRW 34


>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane
          protein, structural genomics, NPPSFA; NMR {Homo
          sapiens} SCOP: a.4.1.3
          Length = 73

 Score = 25.6 bits (56), Expect = 1.9
 Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 70 SPDEYRKRFQSAMNRYFLGVPDRW 93
          + ++ +K  + A+ +Y  G  D W
Sbjct: 22 TQNQ-QKLLELALQQYPRGSSDCW 44


>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin
           degradation, cortalcerone/microthecin forming,
           metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB:
           4a7y_A* 4a7z_A*
          Length = 900

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 63  GKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSGQLGSKGGLLFHITEGPVH 113
           G L     P    +R     +   +G+  RW+    +KG + F + E P H
Sbjct: 811 GSLVCARWPPVKNQRVAGTHSPAAMGLTSRWAVTKNTKGQITFRLPEAPDH 861


>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
           oxidoreductase YVAA, oxidoredu PSI-2, protein structure
           initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
          Length = 358

 Score = 25.4 bits (56), Expect = 5.3
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 15/63 (23%)

Query: 45  WDKKIETMVK--KSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSGQLGSKGG 102
           WD    T+ K    G L        I         +Q + NRY   V  RW  + G+  G
Sbjct: 127 WDNDFLTIKKLISEGSLE------DIN-------TYQVSYNRYRPEVQARWREKEGTATG 173

Query: 103 LLF 105
            L+
Sbjct: 174 TLY 176


>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
           electron transfer, folate-ME enzyme, oxidoreductase;
           HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
           PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
           3ada_A*
          Length = 965

 Score = 25.3 bits (55), Expect = 5.7
 Identities = 5/19 (26%), Positives = 5/19 (26%)

Query: 61  GQGKLPTIVSPDEYRKRFQ 79
           G G L     P  Y     
Sbjct: 109 GLGVLDPTKDPAYYDHVHV 127


>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
           protein structure initiative, PSI, NEW YORK structural
           GENO research consortium; HET: NAD; 1.95A {Listeria
           innocua}
          Length = 359

 Score = 24.7 bits (54), Expect = 8.2
 Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 77  RFQSAMNRYFLGVPDRWSGQLGSKGGLLF 105
             +S ++    G+P  W       GG++ 
Sbjct: 148 HLESRVHGA-NGIPGDWRHLKAHGGGMVL 175


>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
          serotonin, salivary gland, binding, ligand binging
          protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
          PDB: 3q6p_A* 3q6t_A*
          Length = 381

 Score = 24.7 bits (53), Expect = 9.2
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 41 RTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYFLGVP 90
          + + W K++       G       + T  + D   ++   A+ R    VP
Sbjct: 4  QGYKW-KQLLYNNVTPGSYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVP 52


>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
           genomics, center FO structural genomics of infectious
           diseases; HET: MSE; 2.75A {Yersinia pestis}
          Length = 352

 Score = 24.6 bits (54), Expect = 9.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 77  RFQSAMNRYFLGVPDRWSGQLGSKGGLLF 105
            F+S  +RY   +  RW  Q G+ GG+ +
Sbjct: 150 YFESHFDRYRPEIRQRWREQAGAGGGIWY 178


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,772,208
Number of extensions: 96899
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 26
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)