RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1357
         (113 letters)



>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
           IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 61.6 bits (149), Expect = 5e-13
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 26  DDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRY 85
                   + +ID +  +   KK     K   +  G G   + V+P++Y KRF   M+  
Sbjct: 324 SPKKEVYFMAIIDILTPYDTKKKAAHAAK--TVKHGAGAEISTVNPEQYSKRFNEFMSNI 381

Query: 86  F 86
            
Sbjct: 382 L 382



 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 1   MQAINNDTQFLANQHVMDYSLLLGIDDTN 29
           ++ +  D +FLA   +MDYSLL+GI D +
Sbjct: 228 LEKLKRDVEFLAQLKIMDYSLLVGIHDVD 256


>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 25.9 bits (57), Expect = 0.33
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 76 KRFQSAMNRYFLGVPDRW 93
           +   +M ++  G P RW
Sbjct: 10 SQLTRSMVKFPGGTPGRW 27


>d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit
          {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 141

 Score = 24.6 bits (53), Expect = 2.8
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 66 PTIVSPDEYRKRFQSAMNRYFLGV 89
          P  + P +   R Q  M+ Y  G+
Sbjct: 7  PEYILPWQGLVRLQKIMDEYAAGI 30


>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid
           herpesvirus 4, MuHV-4 [TaxId: 33708]}
          Length = 371

 Score = 24.3 bits (52), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 36  MIDYIRTFTWDKKIETMVKKS 56
           MI Y  TFTW  ++  + ++S
Sbjct: 174 MIPYSSTFTWCGELGAISEES 194


>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein
           of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
          Length = 213

 Score = 23.8 bits (51), Expect = 5.5
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 22  LLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIV 69
           LL +D   +E     IDY   F  +  ++ MV++S   G   +  +++
Sbjct: 70  LLNLDANYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLI 117


>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
          Length = 62

 Score = 22.5 bits (48), Expect = 6.3
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 69 VSPDEYRKRFQSAMNRYFL 87
          V P +YR       +R+  
Sbjct: 42 VPPHKYRMTNMQGESRFLH 60


>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 140

 Score = 23.1 bits (50), Expect = 7.3
 Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 69  VSPDEYRKRFQSAMNRYFLGVPDRWSGQL 97
            +     + F + + +Y+ G  DR +  L
Sbjct: 110 ATDAN--QDFVALLAKYYGGGEDRRTVAL 136


>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
           4513]}
          Length = 500

 Score = 23.6 bits (51), Expect = 7.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 40  IRTFTWDKKIETMVKKSGLLGGQGKLPT 67
           I+ F + +  +  V  +G +GGQ + PT
Sbjct: 471 IQPFPFQEHTDLPVGPTGGMGGQAEGPT 498


>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 133

 Score = 23.1 bits (49), Expect = 7.4
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 2   QAINNDTQFLANQHVMDYSLLL--GIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGL- 58
             +      +   +  D SL     + D  +E V G +          KI+  VK     
Sbjct: 34  NNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRGKL-----IPNYFKIKEEVKDKVYG 88

Query: 59  --LGGQGKLPTIVSPDEYRKRFQSAMNRYF 86
             + G G        +E+    ++ +  Y+
Sbjct: 89  ITISGSGPSIIAFPKEEFIDEVENILRDYY 118


>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A
          chain, domains 1 and 2 {Paracoccus denitrificans
          [TaxId: 266]}
          Length = 85

 Score = 23.0 bits (49), Expect = 7.7
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 45 WDKKIETMVKKSGLLGGQGKLPTIV 69
          WD  +  M++  G+     +   IV
Sbjct: 36 WDMTVTRMMRNHGVALEPEERAAIV 60


>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS)
          {Escherichia coli [TaxId: 562]}
          Length = 87

 Score = 22.6 bits (48), Expect = 8.8
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 59 LGGQGKLPTIVSPDEYRKRFQSAMN 83
          L G  K       + +  RF  AM+
Sbjct: 8  LRGTDKTVAPAGGEAFEARFIEAMD 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 432,652
Number of extensions: 18732
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 13
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)