BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13573
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HTG|A Chain A, Structural And Functional Characterization Of Tm Vii Of
          The Nhe1 Isoform Of The Na+H+ EXCHANGER
          Length = 28

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/25 (84%), Positives = 25/25 (100%)

Query: 54 HVNEILYIVVFGESLLNDAVTVVLY 78
          H+NE+L+I+VFGESLLNDAVTVVLY
Sbjct: 1  HINELLHILVFGESLLNDAVTVVLY 25


>pdb|2L0E|A Chain A, Structural And Functional Analysis Of Tm Vi Of The Nhe1
          Isoform Of The Na+H+ EXCHANGER
          Length = 33

 Score = 43.1 bits (100), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/23 (82%), Positives = 22/23 (95%)

Query: 32 MLFAALISAVDPVAVLAVFEEIH 54
          +LF ++ISAVDPVAVLAVFEEIH
Sbjct: 7  LLFGSIISAVDPVAVLAVFEEIH 29


>pdb|2K3C|A Chain A, Structural And Functional Characterization Of Tm Ix Of The
           Nhe1 Isoform Of The Na+H+ EXCHANGER
          Length = 33

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 19/19 (100%)

Query: 144 AYLAYLTAEIFHMSGILAI 162
           +Y+AYL+AE+FH+SGI+A+
Sbjct: 3   SYMAYLSAELFHLSGIMAL 21


>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
           H2a.Z-H2b
          Length = 192

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 120 FLTGFVTRF-----TNEVRVIEPIFIFVMAYLAYLTAEIFHMSG 158
           F  G + R+     T   RV     I++ A L YLTAE+  ++G
Sbjct: 106 FPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAG 149


>pdb|2RQ7|A Chain A, Solution Structure Of The Epsilon Subunit Chimera
          Combining The N-Terminal Beta-Sandwich Domain From T.
          Elongatus Bp-1 F1 And The C-Terminal Alpha-Helical
          Domain From Spinach Chloroplast F1
          Length = 134

 Score = 26.2 bits (56), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 16 VGQSGIFGPHAPLLEMMLFAALISAVD----PVAVLAVFEEIHVNEILYIVVFGES 67
           GQ GI   HAPLL  +    +    D     +A++  F E+  NE+  +V   E 
Sbjct: 28 TGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVTILVNGAER 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.144    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,955,305
Number of Sequences: 62578
Number of extensions: 120460
Number of successful extensions: 325
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 6
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)