Query psy13573
Match_columns 166
No_of_seqs 138 out of 1029
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 22:41:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0e_A Sodium/hydrogen exchang 99.0 4.3E-11 1.5E-15 67.4 -0.9 31 27-57 2-32 (33)
2 2htg_A NHE-1, NHE1 isoform of 98.7 6.7E-10 2.3E-14 59.9 -1.5 26 54-79 1-26 (28)
3 2k3c_A TMIX peptide; membrane 96.1 0.00017 6E-09 40.1 -3.2 22 143-164 2-23 (33)
4 1zcd_A Na(+)/H(+) antiporter 1 81.0 5.7 0.0002 33.4 7.8 57 25-81 116-174 (388)
5 2ih3_C Voltage-gated potassium 34.8 84 0.0029 21.3 5.4 55 77-131 66-120 (122)
6 4f4s_A ATP synthase subunit 9, 28.0 1.2E+02 0.0041 19.4 5.7 50 113-163 21-70 (76)
7 2kv5_A FST, putative uncharact 23.9 54 0.0018 17.6 2.1 22 104-125 4-25 (33)
8 2a9h_A Voltage-gated potassium 21.6 1.8E+02 0.0063 20.6 5.4 54 77-130 89-142 (155)
9 4h33_A LMO2059 protein; bilaye 20.4 1.1E+02 0.0039 21.1 3.9 50 77-126 48-97 (137)
10 4b4a_A TATC, SEC-independent p 15.0 1E+02 0.0035 23.9 2.8 19 29-48 193-211 (249)
No 1
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.95 E-value=4.3e-11 Score=67.37 Aligned_cols=31 Identities=61% Similarity=0.878 Sum_probs=28.6
Q ss_pred cHHHHHHhhhhhccccHHHHHHHhhhcCCCc
Q psy13573 27 PLLEMMLFAALISAVDPVAVLAVFEEIHVNE 57 (166)
Q Consensus 27 ~~~~all~Gails~TDpvav~~il~~~~~p~ 57 (166)
+|..+++|||++|||||+++.+++|+.++|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4667899999999999999999999999986
No 2
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=98.70 E-value=6.7e-10 Score=59.88 Aligned_cols=26 Identities=81% Similarity=1.200 Sum_probs=24.2
Q ss_pred CCCcchhhhheeehhhhhHHHHHHHH
Q psy13573 54 HVNEILYIVVFGESLLNDAVTVVLYH 79 (166)
Q Consensus 54 ~~p~~l~~ll~gEs~lND~~aivlf~ 79 (166)
++|++++.+++|||++||++++++|.
T Consensus 1 ~V~~~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 1 HINELLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp CCSSTTHHHHTTTTTTTTTTTTTTTT
T ss_pred CCCceEEEEEEeeeeecccEEEEEEe
Confidence 57999999999999999999999885
No 3
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=96.05 E-value=0.00017 Score=40.11 Aligned_cols=22 Identities=55% Similarity=1.068 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhcchhhhhhhh
Q psy13573 143 MAYLAYLTAEIFHMSGILAIAE 164 (166)
Q Consensus 143 ~~~~~y~lae~l~~SGilAv~~ 164 (166)
.+|.+|.+||.+|.||++|++.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~ 23 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIA 23 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTT
T ss_pred hhHHHHHHHHHhCcChHHHHHH
Confidence 4688999999999999999874
No 4
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=81.01 E-value=5.7 Score=33.40 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=47.3
Q ss_pred CCcHHHHHHhhhhhccccHHHHHHHhhh--cCCCcchhhhheeehhhhhHHHHHHHHHH
Q psy13573 25 HAPLLEMMLFAALISAVDPVAVLAVFEE--IHVNEILYIVVFGESLLNDAVTVVLYHMF 81 (166)
Q Consensus 25 ~~~~~~all~Gails~TDpvav~~il~~--~~~p~~l~~ll~gEs~lND~~aivlf~~~ 81 (166)
+.+-.++.--+++.++||-+-.+.++.. .+.|++++..+.+=+..||..++++..++
T Consensus 116 ~~~~~~~~~gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvf 174 (388)
T 1zcd_A 116 NYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALF 174 (388)
T ss_dssp CCSSTTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChhhhhhhHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456677888999999999999875 45799999999999999999999988776
No 5
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=34.76 E-value=84 Score=21.27 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCcchhHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy13573 77 LYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE 131 (166)
Q Consensus 77 lf~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~gi~iG~~~G~l~~~l~~~~~~ 131 (166)
++.....+...|..|..+.+...-+...++.+.+=..++...|.+...+.+..++
T Consensus 66 ~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 66 LWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp HHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555565544333333333344555666666788888888877765443
No 6
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=28.03 E-value=1.2e+02 Score=19.37 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhhcchhhhhhh
Q psy13573 113 VIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAIA 163 (166)
Q Consensus 113 ~iG~~~G~l~~~l~~~~~~~~~~~~~~~l~~~~~~y~lae~l~~SGilAv~ 163 (166)
.-|+..|..........-++|..+. -.....++.+.++|..+.-+++-.+
T Consensus 21 G~giGiG~vfg~~i~~~aRnP~~~~-~l~~~~ilG~Al~Ea~glf~LvvA~ 70 (76)
T 4f4s_A 21 GAGIGIAIVFAALINGVSRNPSIKD-TVFPMAILGFALSEATGLFCLMVSF 70 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHhcChhHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555543322221211 1234567778888988776665433
No 7
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=23.92 E-value=54 Score=17.65 Aligned_cols=22 Identities=5% Similarity=0.394 Sum_probs=12.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy13573 104 FFVVAVGGTVIGVIWGFLTGFV 125 (166)
Q Consensus 104 ~~~~~~~gi~iG~~~G~l~~~l 125 (166)
++..+++-+++|+++-.+-.|+
T Consensus 4 i~~~IIaPivVGvvl~L~d~WL 25 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVL 25 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667776665554443
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=21.60 E-value=1.8e+02 Score=20.56 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCcchhHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy13573 77 LYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTN 130 (166)
Q Consensus 77 lf~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~gi~iG~~~G~l~~~l~~~~~ 130 (166)
++..+..+...|..+..+.+...-+...++.+.+-..++...|.+...+.++.+
T Consensus 89 ~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 89 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp HHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred eheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445444432233223334455555666678888888888776543
No 9
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=20.44 E-value=1.1e+02 Score=21.08 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCcchhHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy13573 77 LYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVT 126 (166)
Q Consensus 77 lf~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~gi~iG~~~G~l~~~l~ 126 (166)
++..+..+..-|..|..+.+...-+...+..+.+-..++...+.+..++.
T Consensus 48 ~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~ 97 (137)
T 4h33_A 48 LWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFR 97 (137)
T ss_dssp HHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666555666554434444444555666666777888888776654
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=15.04 E-value=1e+02 Score=23.92 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=15.4
Q ss_pred HHHHHhhhhhccccHHHHHH
Q psy13573 29 LEMMLFAALISAVDPVAVLA 48 (166)
Q Consensus 29 ~~all~Gails~TDpvav~~ 48 (166)
..++.+||+++| ||..-.-
T Consensus 193 v~~~v~aAiiTP-D~~sq~l 211 (249)
T 4b4a_A 193 VIAFVIGAIIAP-DVSTQVL 211 (249)
T ss_dssp HHHHHHHHHHCS-SHHHHHH
T ss_pred HHHHHHHHHHCC-cHHHHHH
Confidence 468899999999 9986543
Done!