RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13573
(166 letters)
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 183 bits (467), Expect = 7e-56
Identities = 89/159 (55%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 5 HLLFWSLSLWAVGQSGIFGP-HAPLLEMMLFAALISAVDPVAVLAVFEEIHVNEILYIVV 63
+ LSL+ + G FG LL+ +LF +LISAVDPVAVLAVFEE HVNE LYI++
Sbjct: 107 NAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIII 166
Query: 64 FGESLLNDAVTVVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTG 123
FGESLLNDAVTVVLY+ F + + V VD+ G ASFFVV GG ++GV++GFL
Sbjct: 167 FGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVA 226
Query: 124 FVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAI 162
F+TRFT+ +R IEP+F+F+++YL+YL AE H+SGILA+
Sbjct: 227 FITRFTHHIRQIEPLFVFLISYLSYLFAETLHLSGILAL 265
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 86.5 bits (215), Expect = 1e-20
Identities = 59/145 (40%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Query: 19 SGIFGPHAPLLEMMLFAALISAVDPVAVLAVF-EEIHVNEILYIVVFGESLLNDAVTVVL 77
+ + G PLLE +LF A +SA PV VLA+ E +N L ++ GES+LNDAV VVL
Sbjct: 97 ALLGGLGIPLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVL 156
Query: 78 YHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEP 137
+ A +G DL L F VVA+GG ++G+++G+L +TRFT+ R +E
Sbjct: 157 LAVLLALAGVGGL----SDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDRELEV 212
Query: 138 IFIFVMAYLAYLTAEIFHMSGILAI 162
+ + +A LA L AE+ +SGIL
Sbjct: 213 LLVLALALLAALLAELLGLSGILGA 237
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 70.4 bits (173), Expect = 8e-15
Identities = 44/137 (32%), Positives = 69/137 (50%)
Query: 27 PLLEMMLFAALISAVDPVAVLAVFEEIHVNEILYIVVFGESLLNDAVTVVLYHMFEAYTE 86
PL L A++S DPVAV +F+ + V + + ++ GESLLND V +VL+ + A
Sbjct: 117 PLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAALL 176
Query: 87 MGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYL 146
L LL L + G ++G + G L + R ++E + ++A+
Sbjct: 177 GTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFA 236
Query: 147 AYLTAEIFHMSGILAIA 163
AYL AE +SGILA+
Sbjct: 237 AYLLAEALGVSGILAVV 253
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 69.9 bits (171), Expect = 1e-14
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 15 AVGQSGIFGPHAPLLEMMLFAALISAVDPVAVLAVFEEIHVNEILYIVVFGESLLNDAVT 74
VG S + PL ++ A++S D VAVL F+ I + L I++ GESLLND
Sbjct: 93 VVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAA 152
Query: 75 VVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRV 134
+V++ + A D L+ F VV VGG G+ G+L + R + +
Sbjct: 153 LVVFAIAVAVAL----GKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPL 208
Query: 135 IEPIFIFVMAYLAYLTAEIFHMSGILAI 162
+E + + +L AE FH SG++A+
Sbjct: 209 VEIALTILAPFAGFLLAERFHFSGVIAV 236
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 42.4 bits (100), Expect = 4e-05
Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 15/163 (9%)
Query: 10 SLSLWAVG---QSGIFGPHA------PLLEMMLFAALISAVDPVAVLAVFEEIHVNEILY 60
+LSL +G SG+ G A LE +L A++ + D AV ++ ++NE +
Sbjct: 91 ALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVA 150
Query: 61 IVVFGESLLNDAVTVVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVG-GTVIGVIWG 119
+ ES ND + V L G N L G F+ G G ++G+ G
Sbjct: 151 STLEIESGSNDPMAVFLTITLIELIAGGETN-----LSWGFLLGFLQQFGLGLLLGLGGG 205
Query: 120 FLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAI 162
L + N + PI L + SGILA+
Sbjct: 206 KLLLQLINRINLDSGLYPILALAGGLLIFSLTGAIGGSGILAV 248
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 34.4 bits (80), Expect = 0.021
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 7/139 (5%)
Query: 27 PLLEMMLFAALISAVDPVAVLAVFEE--IHVNEILYIVVFGESLLNDAVTVVLYHMFEAY 84
LE +L A++ + D AV ++ +++ E + + ES ND + V L
Sbjct: 116 DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIEL 175
Query: 85 TEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTN-EVRVIEPIFIFVM 143
G + L F G +IG++ G+L + + PI +
Sbjct: 176 ITGGETGLS----WGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAG 231
Query: 144 AYLAYLTAEIFHMSGILAI 162
A L + SG LA+
Sbjct: 232 ALLIFALTAALGGSGFLAV 250
>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome. The
nucleosome is an octamer containing two H2A, H2B, H3,
and H4 subunits. The H2A subunit performs essential
roles in maintaining structural integrity of the
nucleosome, chromatin condensation, and binding of
specific chromatin-associated proteins.
Length = 115
Score = 28.8 bits (65), Expect = 0.72
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 140 IFVMAYLAYLTAEIFHMSGILA 161
+++ A L YLTAE+ ++G A
Sbjct: 45 VYLAAVLEYLTAEVLELAGNAA 66
>gnl|CDD|216018 pfam00606, Glycoprotein_B, Herpesvirus Glycoprotein B. This family
of proteins contains a transmembrane region.
Length = 711
Score = 28.7 bits (65), Expect = 1.7
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 25/72 (34%)
Query: 96 DLLSGLASFF---------VVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEP-----IFIF 141
+ GL FF V V V G + ++G V+ N P I +
Sbjct: 620 AFVRGLDDFFQGLGAVGKAVGNVVSGVAGAVGSIVSGVVSFLKN------PFGGLLIILL 673
Query: 142 V-----MAYLAY 148
V +LAY
Sbjct: 674 VLAGLVAVFLAY 685
>gnl|CDD|224094 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 289
Score = 27.6 bits (62), Expect = 3.1
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 95 VDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIE-----PIFIFVMAYLAYL 149
+ LL GL + + V GT++G++ G+ G+V R +R+ + P + + +A L
Sbjct: 87 ISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVL--MRITDIFLAFPSLLLAILLVAIL 144
Query: 150 TAEIFHMSGILAI 162
+ ++ LA+
Sbjct: 145 GPGLLNLILALAL 157
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 27.9 bits (62), Expect = 3.1
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 29 LEMMLFAALISAVDPVAVL-AVFEEIHVNEILYIVVFGESLLNDAVTVVLYHMFEAYTEM 87
+ ++++LI VD + L FE+ E I+ G + L DAV + L FEA++ +
Sbjct: 147 FRIAVYSSLIKLVDAINQLRDGFEQ-KAKEFADILKMGRTQLQDAVPMTLGQEFEAFSIL 205
Query: 88 GHNNVLYVDLLSGLASFFVVAVGGTVIG 115
V + + L V +G T IG
Sbjct: 206 LEEEVKNIKRTAEL--LLEVNLGATAIG 231
>gnl|CDD|237608 PRK14095, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 533
Score = 27.7 bits (62), Expect = 3.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 35 AALISAVDPVAVLAVFEEIHVNEILYIVV 63
IS VDP V EI + + L+IVV
Sbjct: 183 VHFISNVDPDDAAEVLSEIDLAKTLFIVV 211
>gnl|CDD|239784 cd04251, AAK_NAGK-UC, AAK_NAGK-UC: N-Acetyl-L-glutamate kinase -
uncharacterized (NAGK-UC). This domain is similar to
Escherichia coli and Pseudomonas aeruginosa NAGKs which
catalyze the phosphorylation of the gamma-COOH group of
N-acetyl-L-glutamate (NAG) by ATP in the second step of
microbial arginine biosynthesis. These uncharacterized
domain sequences are found in some bacteria (Deinococci
and Chloroflexi) and archea and belong to the Amino Acid
Kinase Superfamily (AAK).
Length = 257
Score = 27.3 bits (61), Expect = 3.3
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 120 FLT---GFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAI 162
F+T G +R+T++ +E +F+ VM + H G+ A+
Sbjct: 50 FVTSPSGIRSRYTDK-ETLE-VFVMVMGLINKKIVARLHSLGVKAV 93
>gnl|CDD|219154 pfam06738, DUF1212, Protein of unknown function (DUF1212). This
family represents a conserved region within a number of
hypothetical membrane proteins of unknown function found
in eukaryotes, bacteria and archaea.
Length = 193
Score = 27.1 bits (61), Expect = 3.5
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 97 LLSGLAS-FFVVAVGGTVIGVIWGFLTG----FVTRFTNEVRVIEPIFIFVMAYLAYLTA 151
L +GLAS F V GG I + FL G + + + + +F + A++A L A
Sbjct: 108 LAAGLASAAFAVLFGGDWIDFLIAFLAGLLGGLLRQILAKRGLNPFVFEALAAFVASLIA 167
Query: 152 EIFHMSGI 159
+ G+
Sbjct: 168 LLAVSLGL 175
>gnl|CDD|237599 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase;
Provisional.
Length = 268
Score = 27.2 bits (61), Expect = 4.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 120 FLT---GFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAI 162
F+T G +R+T+ +E +FI MA + E G+ A+
Sbjct: 54 FVTSPSGVTSRYTDR-ETLE-VFIMAMALINKQLVERLQSLGVNAV 97
>gnl|CDD|215209 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
Length = 302
Score = 26.6 bits (59), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 85 TEMGHNNVLYVDLLSGLA-SFFVVAV----GGTVI 114
TE G + VL DL SG + +F + V G VI
Sbjct: 105 TEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVI 139
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 26.8 bits (60), Expect = 6.7
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 25/71 (35%)
Query: 97 LLSGLASFF---------VVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEP-----IFIFV 142
+ GLA F V V V G + ++G ++ N P I + V
Sbjct: 660 FVRGLAEFMQGLGAVGKAVGNVVSGVAGAVGSIVSGVISFLKN------PFGGLAIGLLV 713
Query: 143 -----MAYLAY 148
+LAY
Sbjct: 714 IAVLVAVFLAY 724
>gnl|CDD|197711 smart00414, H2A, Histone 2A.
Length = 106
Score = 25.8 bits (57), Expect = 6.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 140 IFVMAYLAYLTAEIFHMSGILA 161
+++ A L YLTAE+ ++G A
Sbjct: 34 VYLAAVLEYLTAEVLELAGNAA 55
>gnl|CDD|220597 pfam10139, Virul_Fac, Putative bacterial virulence factor. Members
of this family of prokaryotic proteins include various
putative virulence factor effector proteins. Their exact
function is, as yet, unknown.
Length = 852
Score = 26.6 bits (59), Expect = 8.1
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 122 TGFVTRFTNEVRVIEPIF 139
TG VTRFT F
Sbjct: 94 TGLVTRFTRTAAPNPAGF 111
>gnl|CDD|163462 TIGR03750, conj_TIGR03750, conjugative transfer region protein,
TIGR03750 family. Members of this protein family are
found occasionally on plasmids. Usually, however, they
are found on the bacterial main chromosome in regions
flanked by markers of conjugative transfer and/or
transposition [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 111
Score = 25.3 bits (56), Expect = 9.5
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 104 FFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILA 161
V A G G++ G L + I A L + + +LA
Sbjct: 23 LGVAAGVGLAAGLVLGLLLALLAGP--------WALIPTGALLGPI-LVVLIGGKLLA 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.144 0.436
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,023,432
Number of extensions: 886269
Number of successful extensions: 1811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1768
Number of HSP's successfully gapped: 167
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (24.9 bits)