RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13573
         (166 letters)



>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane
          protein, NHE1; NMR {Homo sapiens}
          Length = 33

 Score = 48.5 bits (115), Expect = 6e-09
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 30 EMMLFAALISAVDPVAVLAVFEEIHVNE 57
          + +LF ++ISAVDPVAVLAVFEEIH  +
Sbjct: 5  DNLLFGSIISAVDPVAVLAVFEEIHKKK 32


>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane
          protein, transmembrane segment, helix-KINK-helix; NMR
          {Synthetic}
          Length = 28

 Score = 43.1 bits (101), Expect = 5e-07
 Identities = 21/25 (84%), Positives = 25/25 (100%)

Query: 54 HVNEILYIVVFGESLLNDAVTVVLY 78
          H+NE+L+I+VFGESLLNDAVTVVLY
Sbjct: 1  HINELLHILVFGESLLNDAVTVVLY 25


>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle,
           NHE1, Na+/H+ transporter, metal transport; NMR
           {Synthetic}
          Length = 33

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 12/19 (63%), Positives = 19/19 (100%)

Query: 144 AYLAYLTAEIFHMSGILAI 162
           +Y+AYL+AE+FH+SGI+A+
Sbjct: 3   SYMAYLSAELFHLSGIMAL 21


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 30/166 (18%), Positives = 49/166 (29%), Gaps = 66/166 (39%)

Query: 2   VTGHLLFWSLSLWAV-------------GQSGI------------FGP-----HAPLLEM 31
           V+G       SL+ +              QS I            F P     H+ LL  
Sbjct: 379 VSGP----PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV- 433

Query: 32  MLFAALISAVDPVA--VLAVFEEIHVNEILYIVVF----GESL----------LNDAVTV 75
                   A D +   ++      +  + + I V+    G  L          + D +  
Sbjct: 434 -------PASDLINKDLVKNNVSFNAKD-IQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485

Query: 76  VLYHMFEAYTEMGHNNVLYVDL----LSGLASFFVVAVGGTVIGVI 117
           +    +E  T+    ++L  D      SGL         GT + VI
Sbjct: 486 LPVK-WETTTQFKATHIL--DFGPGGASGLGVLTHRNKDGTGVRVI 528



 Score = 26.6 bits (58), Expect = 6.2
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 22/73 (30%)

Query: 4    GHLLFWSL----SLWAVGQS-------------GIFGPHA-PLLEMMLFAALISAVDPVA 45
            GH    SL    +L ++                G+    A P  E+      + A++P  
Sbjct: 1761 GH----SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816

Query: 46   VLAVFEEIHVNEI 58
            V A F +  +  +
Sbjct: 1817 VAASFSQEALQYV 1829


>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
           DDQ; 2.99A {Equus caballus}
          Length = 452

 Score = 26.5 bits (58), Expect = 4.6
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 53  IHVNEILYIVVFGESLLNDAVTVVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGT 112
              +   + V+ G    +         M +   ++   N + VD  SG  + +  AV   
Sbjct: 66  FQSSRKTHFVIHG--FRDRGEDSWPSDMCKKILQVETTNCISVDWSSGAKAEYTQAVQNI 123


>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
           membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
           maritima} PDB: 4av6_A
          Length = 735

 Score = 26.3 bits (58), Expect = 6.2
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 1   MVTGHLLFWSLSLWAVGQSGIFGPHAPLLEMMLFAALISAVDPVA-------VLAVFEEI 53
           ++    +F               P   +  ++ +    + V           V+      
Sbjct: 265 IILASYMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILYVIVKKPSD 324

Query: 54  HVNEILYIVVFGESLLNDAVTVVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTV 113
           +    L I ++  +LL    TVVL      +       +  +    G  S +  A+ G  
Sbjct: 325 NPQRELNISLWTSALL----TVVLTAFLTYFYLKDLQGLDVLGFRFGAISPWFSAIIGIF 380

Query: 114 IGVIWGFLTGFVT 126
            G++ GF   + T
Sbjct: 381 SGILIGFWAEYYT 393


>2ree_A CURA; GNAT, S-acetyltransferase, decarboxylase, polyketid synthase,
           loading, phosphopantetheine, transferase, lyase; HET:
           SO4; 1.95A {Lyngbya majuscula} PDB: 2ref_A*
          Length = 224

 Score = 25.4 bits (55), Expect = 9.2
 Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 80  MFEAYTEMGHNN--VLYVDLLSGLASFFVVAVGGTVIGVIWGFLT 122
               ++E    +   +Y  +       F++ +   ++G I+    
Sbjct: 30  ETLCWSENLQVDNEEIYRRIFKIPQGQFILELEDKIVGAIYSQRI 74


>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis
           complex; 2.25A {Mus musculus}
          Length = 571

 Score = 25.6 bits (55), Expect = 9.3
 Identities = 14/133 (10%), Positives = 42/133 (31%), Gaps = 19/133 (14%)

Query: 48  AVFEEIHVNEILYIVVFGESLLNDAVTVV-------LYHMFEAYTEMGHNNVLYVDLLSG 100
             F+ +  + +  +++ GE++++ A   +       +  +F     +      +  +L G
Sbjct: 229 KTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQG 288

Query: 101 LASF-------FVVAVGGTVIGVIWGFLTGFVTRFTNEVRV-----IEPIFIFVMAYLAY 148
            A+         + ++       +  F          E  +     +  +    + +L  
Sbjct: 289 TAASTKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQ 348

Query: 149 LTAEIFHMSGILA 161
           L         +LA
Sbjct: 349 LLDFQETAGAMLA 361


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.144    0.436 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,696,712
Number of extensions: 163451
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 33
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.4 bits)