BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13574
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BEC|B Chain B, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
pdb|2E30|B Chain B, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 43
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 25 VKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHH 67
V +L VK + K S+NE IH + +DH++ GIEDI G +G+HH
Sbjct: 1 VDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHH 43
>pdb|2B7O|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
pdb|2B7O|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Length = 464
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 28 LNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRD 70
+ VK P + ERL H G ++ R GNH VRD
Sbjct: 305 VGVKLGPNXTPELAVEYVERLDPHNKPGRLTLVSRXGNHKVRD 347
>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3KGF|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3NUD|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUD|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUE|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NUE|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NV8|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3NV8|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3PFP|A Chain A, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
pdb|3PFP|B Chain B, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
Length = 464
Score = 27.3 bits (59), Expect = 3.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 28 LNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRD 70
+ VK P + ERL H G ++ R GNH VRD
Sbjct: 305 VGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRD 347
>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W19|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W1A|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
pdb|2W1A|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
Length = 472
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 28 LNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRD 70
+ VK P + ERL H G ++ R GNH VRD
Sbjct: 313 VGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRD 355
>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|3RZI|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|2YPO|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPO|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPP|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPP|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPQ|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
pdb|2YPQ|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
Length = 462
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 28 LNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRD 70
+ VK P + ERL H G ++ R GNH VRD
Sbjct: 303 VGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRD 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,668,968
Number of Sequences: 62578
Number of extensions: 125968
Number of successful extensions: 311
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 15
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)