Query psy13574
Match_columns 145
No_of_seqs 157 out of 327
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:43:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bec_B Sodium/hydrogen exchang 99.5 3.4E-15 1.2E-19 92.1 1.4 43 25-67 1-43 (43)
2 1wmg_A Netrin receptor UNC5H2; 17.1 79 0.0027 21.3 2.4 25 92-116 73-97 (103)
3 1zav_U 50S ribosomal protein L 12.4 1.6E+02 0.0055 15.8 2.3 22 93-114 3-24 (30)
4 1srv_A Protein (groel (HSP60 c 11.8 52 0.0018 24.3 0.2 42 73-114 2-48 (145)
5 3m6c_A 60 kDa chaperonin 1; ch 11.6 53 0.0018 25.4 0.2 17 74-90 9-25 (194)
6 3ewt_E Tumor necrosis factor r 11.5 1.8E+02 0.0062 15.1 2.2 21 96-116 4-24 (25)
7 2dbf_A Nuclear factor NF-kappa 9.6 1.7E+02 0.0057 19.9 2.1 48 68-115 33-92 (100)
8 3arc_T Photosystem II reaction 9.5 8.3 0.00028 21.7 -3.8 14 3-16 10-23 (32)
9 3osx_A 60 kDa chaperonin; alph 9.3 65 0.0022 25.1 -0.1 42 72-113 14-60 (201)
10 1wh4_A IRAK4, interleukin-1 re 7.7 3.4E+02 0.012 19.0 3.3 22 93-114 88-109 (127)
No 1
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=99.50 E-value=3.4e-15 Score=92.09 Aligned_cols=43 Identities=49% Similarity=0.865 Sum_probs=24.9
Q ss_pred HHHhhhhcccccCCCchHHHHHHHHHHhhhhccccccccccch
Q psy13574 25 VKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHH 67 (145)
Q Consensus 25 v~~L~Ik~~~~~~~~l~e~~~~~~~dh~~~giEdi~g~~g~~~ 67 (145)
|+||+||++++.+++++|++|++++||+|+|+|||||++||+|
T Consensus 1 V~~L~Vkr~~~~~~t~~e~ih~~~~dhlmaGiEdi~G~~g~~~ 43 (43)
T 2bec_B 1 VDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHH 43 (43)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CcceeeeccccccccHHHHHhhhhhhhhhhchHhhcCCCCCCC
Confidence 6899999999999999999999999999999999999999986
No 2
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis, structural genomi NPPSFA; 2.10A {Mus musculus} SCOP: a.77.1.2
Probab=17.14 E-value=79 Score=21.33 Aligned_cols=25 Identities=4% Similarity=0.118 Sum_probs=20.9
Q ss_pred CcchHHHHHhhchhhHHHHHHHhcC
Q psy13574 92 AEPKILETYSKLAMKDAMEFMRRNA 116 (145)
Q Consensus 92 ~~~~i~~~y~kl~l~~a~~~~~~~~ 116 (145)
.-..++++.++|+..||++++...+
T Consensus 73 tv~~L~~~L~~mgR~Da~~~L~~~~ 97 (103)
T 1wmg_A 73 DLNSLASALEEMGKSEMLVAMATDG 97 (103)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred cHHHHHHHHHHcCCHHHHHHHHccC
Confidence 3467888999999999999998753
No 3
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=12.41 E-value=1.6e+02 Score=15.82 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.0
Q ss_pred cchHHHHHhhchhhHHHHHHHh
Q psy13574 93 EPKILETYSKLAMKDAMEFMRR 114 (145)
Q Consensus 93 ~~~i~~~y~kl~l~~a~~~~~~ 114 (145)
.++|++..+.|.+-++.++++.
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~ 24 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKK 24 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHH
Confidence 4689999999999999998863
No 4
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=11.79 E-value=52 Score=24.31 Aligned_cols=42 Identities=19% Similarity=0.480 Sum_probs=24.2
Q ss_pred hhhhhhcchhhhccCCCCCC----cchHHHHHhhch-hhHHHHHHHh
Q psy13574 73 KRFDNRFIRPYLLRDHQQGA----EPKILETYSKLA-MKDAMEFMRR 114 (145)
Q Consensus 73 ~~FD~kYLkp~Ltr~~~~~~----~~~i~~~y~kl~-l~~a~~~~~~ 114 (145)
++||+=|+.|+|.-+..+.. ++.|+=.=+|+. ++|-+.+++.
T Consensus 2 mqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i~~llP~LE~ 48 (145)
T 1srv_A 2 YQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQ 48 (145)
T ss_dssp EEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHH
T ss_pred ccccCCccCceeecCccccEEEeeccEEEEecccccCHHHHHHHHHH
Confidence 47999999999988765321 233322224443 4555555443
No 5
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=11.61 E-value=53 Score=25.41 Aligned_cols=17 Identities=29% Similarity=0.745 Sum_probs=14.5
Q ss_pred hhhhhcchhhhccCCCC
Q psy13574 74 RFDNRFIRPYLLRDHQQ 90 (145)
Q Consensus 74 ~FD~kYLkp~Ltr~~~~ 90 (145)
+||+=|+.|+|..+..+
T Consensus 9 qfDrGYiSpyfvtd~~~ 25 (194)
T 3m6c_A 9 GFDKGFLSAYFVTDFDN 25 (194)
T ss_dssp EESCCBSCGGGCSBTTT
T ss_pred EccCcccCceeeeccCC
Confidence 79999999999987653
No 6
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=11.46 E-value=1.8e+02 Score=15.12 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=16.7
Q ss_pred HHHHHhhchhhHHHHHHHhcC
Q psy13574 96 ILETYSKLAMKDAMEFMRRNA 116 (145)
Q Consensus 96 i~~~y~kl~l~~a~~~~~~~~ 116 (145)
|-++=+.|.++|..+.++.++
T Consensus 4 Ip~IAe~M~~~~Vk~fvR~~g 24 (25)
T 3ewt_E 4 ITTIAGVMTLSQVKGFVRKNG 24 (26)
T ss_pred hhHHHHHHhHHHHHHHHHHcC
Confidence 455667899999999998764
No 7
>2dbf_A Nuclear factor NF-kappa-B P105 subunit; apoptosis, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=9.57 E-value=1.7e+02 Score=19.90 Aligned_cols=48 Identities=8% Similarity=0.179 Sum_probs=27.7
Q ss_pred hhhhhhhhhhhcchhhhccCCCC------------CCcchHHHHHhhchhhHHHHHHHhc
Q psy13574 68 VRDRFKRFDNRFIRPYLLRDHQQ------------GAEPKILETYSKLAMKDAMEFMRRN 115 (145)
Q Consensus 68 ~~~~~~~FD~kYLkp~Ltr~~~~------------~~~~~i~~~y~kl~l~~a~~~~~~~ 115 (145)
||..=++.+-.|+..+|.....+ ..=.++.++-+.|+.+||+.+++.-
T Consensus 33 Wr~LAe~Lg~~~li~~f~~~~SPt~~LL~~we~~~~tv~~L~~~L~~mgr~dav~~L~~~ 92 (100)
T 2dbf_A 33 WATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGTVRELVEALRQMGYTEAIEVIQAA 92 (100)
T ss_dssp HHHHHHHHTCGGGHHHHHHSSCHHHHHHHHHHHTCCCHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHCcHHHHHHHhcCCChHHHHHHHHHhCCCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45455555555665555444321 1123445555688999999888864
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=9.46 E-value=8.3 Score=21.72 Aligned_cols=14 Identities=36% Similarity=0.918 Sum_probs=9.3
Q ss_pred eeeeeeeeeeeecc
Q psy13574 3 VTTTIAVIYFTVFF 16 (145)
Q Consensus 3 lTTTl~VV~FTVfv 16 (145)
++.|+.|+||.|++
T Consensus 10 l~~tlgiiFFAI~F 23 (32)
T 3arc_T 10 FACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhh
Confidence 44567777777765
No 9
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=9.34 E-value=65 Score=25.07 Aligned_cols=42 Identities=21% Similarity=0.556 Sum_probs=24.7
Q ss_pred hhhhhhhcchhhhccCCCCCC----cchHHHHHhhc-hhhHHHHHHH
Q psy13574 72 FKRFDNRFIRPYLLRDHQQGA----EPKILETYSKL-AMKDAMEFMR 113 (145)
Q Consensus 72 ~~~FD~kYLkp~Ltr~~~~~~----~~~i~~~y~kl-~l~~a~~~~~ 113 (145)
=.+||.=|+.|+|..+..+.. ++.|+=.=+|+ +++|-+.+++
T Consensus 14 ~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i~~ilP~LE 60 (201)
T 3osx_A 14 GMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLE 60 (201)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCHHHHHHHHH
T ss_pred ccEecCccCChheeecccCCEEEecCCeEEEEcCccCCHHHHHHHHH
Confidence 358999999999998765321 33333222444 3455444444
No 10
>1wh4_A IRAK4, interleukin-1 receptor-associated kinase 4; death domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.77.1.2
Probab=7.72 E-value=3.4e+02 Score=18.99 Aligned_cols=22 Identities=0% Similarity=0.104 Sum_probs=19.5
Q ss_pred cchHHHHHhhchhhHHHHHHHh
Q psy13574 93 EPKILETYSKLAMKDAMEFMRR 114 (145)
Q Consensus 93 ~~~i~~~y~kl~l~~a~~~~~~ 114 (145)
=.+++++.+++++.+|++++..
T Consensus 88 V~~Ll~lL~~~~~~~Aa~~L~~ 109 (127)
T 1wh4_A 88 VGDLVDLLVQIELFAPATLLLP 109 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCT
T ss_pred HHHHHHHHHHcccHHHHHHHHH
Confidence 3678999999999999999985
Done!