Query psy13574
Match_columns 145
No_of_seqs 157 out of 327
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 22:43:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13574.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13574hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zavu1 a.108.1.1 (U:1-30) Rib 19.0 40 0.0029 17.0 2.2 20 94-113 4-23 (30)
2 d1ttea1 a.5.2.1 (A:161-215) Ub 13.9 23 0.0017 20.7 0.5 16 92-107 22-37 (55)
3 d1kp8a3 d.56.1.1 (A:137-190,A: 13.5 75 0.0055 19.9 3.1 36 74-114 58-93 (97)
4 d1ioka3 d.56.1.1 (A:137-190,A: 12.4 63 0.0046 20.4 2.5 36 74-114 58-93 (97)
5 d1wmga_ a.77.1.2 (A:) Netrin r 11.0 73 0.0053 19.1 2.4 23 93-115 67-89 (90)
6 d1r0ka3 d.81.1.3 (A:127-264) 1 8.3 59 0.0043 22.1 1.1 48 63-111 25-73 (138)
7 d1wira_ g.37.1.5 (A:) Protein 8.3 32 0.0023 22.8 -0.4 12 76-87 85-96 (121)
8 d1wh4a_ a.77.1.2 (A:) Interleu 7.6 1.7E+02 0.012 18.7 3.3 24 93-116 88-111 (127)
9 d1sr9a1 a.5.7.1 (A:437-491) 2- 7.5 56 0.004 18.6 0.6 13 70-82 43-55 (55)
10 d1d2za_ a.77.1.2 (A:) Pelle de 6.5 1E+02 0.0074 18.6 1.6 22 93-114 71-92 (102)
No 1
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.97 E-value=40 Score=16.99 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=17.3
Q ss_pred chHHHHHhhchhhHHHHHHH
Q psy13574 94 PKILETYSKLAMKDAMEFMR 113 (145)
Q Consensus 94 ~~i~~~y~kl~l~~a~~~~~ 113 (145)
++|+++-+||.+.+--++++
T Consensus 4 eeiv~aiekltvaelaelvk 23 (30)
T d1zavu1 4 DEIIEAIEKLTVSELAELVK 23 (30)
T ss_dssp HHHHHHHHHSBHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 57999999999988888876
No 2
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.92 E-value=23 Score=20.70 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.5
Q ss_pred CcchHHHHHhhchhhH
Q psy13574 92 AEPKILETYSKLAMKD 107 (145)
Q Consensus 92 ~~~~i~~~y~kl~l~~ 107 (145)
+.++++++.++|++|.
T Consensus 22 ~rdKvI~VLrrlgik~ 37 (55)
T d1ttea1 22 EKDKIVEVLRRLGVKS 37 (55)
T ss_dssp CHHHHHHHHHHSCCSS
T ss_pred CchhHHHHHHHhCcCC
Confidence 4588888888888873
No 3
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]}
Probab=13.54 E-value=75 Score=19.85 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=25.8
Q ss_pred hhhhhcchhhhccCCCCCCcchHHHHHhhchhhHHHHHHHh
Q psy13574 74 RFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRR 114 (145)
Q Consensus 74 ~FD~kYLkp~Ltr~~~~~~~~~i~~~y~kl~l~~a~~~~~~ 114 (145)
.||.-|+.|+|+-.... -++ .-++..+.||+..++.
T Consensus 58 ~~d~G~vS~~fvt~~te---~E~--~ekk~~veDaL~a~~a 93 (97)
T d1kp8a3 58 AKLAGGVAVIKVGAATE---VEM--KEKKARVEDALHATRA 93 (97)
T ss_dssp HHHHHCEEEEECCCSSH---HHH--HHHHHHHHHHHHHHHH
T ss_pred HhhcCCccceeecCcch---hhh--hhceeEEechHHHHHH
Confidence 68999999999876552 222 3456778898887763
No 4
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]}
Probab=12.44 E-value=63 Score=20.38 Aligned_cols=36 Identities=11% Similarity=-0.032 Sum_probs=27.2
Q ss_pred hhhhhcchhhhccCCCCCCcchHHHHHhhchhhHHHHHHHh
Q psy13574 74 RFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRR 114 (145)
Q Consensus 74 ~FD~kYLkp~Ltr~~~~~~~~~i~~~y~kl~l~~a~~~~~~ 114 (145)
.||.-|+.|++.-..+. -++ ..+|..+.||+..++.
T Consensus 58 ~~~~GyiS~~fv~~~t~---~E~--~ekk~~veDAl~a~ra 93 (97)
T d1ioka3 58 AKLAGGVAVIRVGGMTE---IEV--KERKDRVDDALNATRA 93 (97)
T ss_dssp HTTSSCEEEEEECCSSH---HHH--HHHHHHHHHHHHHHHH
T ss_pred hhhhccccccccCCCce---eee--eeccceeecCHHHHHH
Confidence 78999999999976552 233 5677888999988763
No 5
>d1wmga_ a.77.1.2 (A:) Netrin receptor UNC5B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.98 E-value=73 Score=19.06 Aligned_cols=23 Identities=4% Similarity=0.125 Sum_probs=19.6
Q ss_pred cchHHHHHhhchhhHHHHHHHhc
Q psy13574 93 EPKILETYSKLAMKDAMEFMRRN 115 (145)
Q Consensus 93 ~~~i~~~y~kl~l~~a~~~~~~~ 115 (145)
-..+.++.++|+-.|+++.+.+.
T Consensus 67 v~~L~~~L~~i~R~Dvv~~L~~~ 89 (90)
T d1wmga_ 67 LNSLASALEEMGKSEMLVAMATD 89 (90)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcHHHHHHHhhC
Confidence 46788999999999999998764
No 6
>d1r0ka3 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}
Probab=8.31 E-value=59 Score=22.06 Aligned_cols=48 Identities=6% Similarity=0.161 Sum_probs=31.4
Q ss_pred cccchhhhhhhhhhhhcchh-hhccCCCCCCcchHHHHHhhchhhHHHHH
Q psy13574 63 HGNHHVRDRFKRFDNRFIRP-YLLRDHQQGAEPKILETYSKLAMKDAMEF 111 (145)
Q Consensus 63 ~g~~~~~~~~~~FD~kYLkp-~Ltr~~~~~~~~~i~~~y~kl~l~~a~~~ 111 (145)
.+|+-+++.+...|.+.++. +||.+.-+..+-.+ +-++++..+||+..
T Consensus 25 SEH~AI~Q~L~~~~~~~I~kI~LTASGGPF~~~~~-~~l~~vt~~~al~H 73 (138)
T d1r0ka3 25 SEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSL-AEMATVTPERAVQH 73 (138)
T ss_dssp HHHHHHHHHCCTTCGGGEEEEEEEECCCTTTTCCH-HHHTTCCHHHHHC-
T ss_pred chHHHHHHHHhhcCcccccEEEEeccchhhhcchH-HHhhcCCHHHHhcC
Confidence 45777777777778888877 67776543333222 56788888887643
No 7
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.28 E-value=32 Score=22.81 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=9.7
Q ss_pred hhhcchhhhccC
Q psy13574 76 DNRFIRPYLLRD 87 (145)
Q Consensus 76 D~kYLkp~Ltr~ 87 (145)
|.+||+|.|.-+
T Consensus 85 dd~YL~PvledD 96 (121)
T d1wira_ 85 KDEYLKPVLEDD 96 (121)
T ss_dssp CHHHHSCSSSSC
T ss_pred CcccccccCCCC
Confidence 899999997543
No 8
>d1wh4a_ a.77.1.2 (A:) Interleukin-1 receptor-associated kinase 4, IRAK4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.58 E-value=1.7e+02 Score=18.73 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=20.3
Q ss_pred cchHHHHHhhchhhHHHHHHHhcC
Q psy13574 93 EPKILETYSKLAMKDAMEFMRRNA 116 (145)
Q Consensus 93 ~~~i~~~y~kl~l~~a~~~~~~~~ 116 (145)
-..++++.+++++-+|++++....
T Consensus 88 V~~L~~~L~~~~~~~A~~~l~~~~ 111 (127)
T d1wh4a_ 88 VGDLVDLLVQIELFAPATLLLPDA 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHcccc
Confidence 467889999999999999997643
No 9
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.48 E-value=56 Score=18.60 Aligned_cols=13 Identities=15% Similarity=0.703 Sum_probs=11.1
Q ss_pred hhhhhhhhhcchh
Q psy13574 70 DRFKRFDNRFIRP 82 (145)
Q Consensus 70 ~~~~~FD~kYLkp 82 (145)
+.|.-|...||.|
T Consensus 43 ~I~~~F~~~Yl~p 55 (55)
T d1sr9a1 43 EMWDAFAEEYLAP 55 (55)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCC
Confidence 5788999999987
No 10
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=6.54 E-value=1e+02 Score=18.65 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=19.1
Q ss_pred cchHHHHHhhchhhHHHHHHHh
Q psy13574 93 EPKILETYSKLAMKDAMEFMRR 114 (145)
Q Consensus 93 ~~~i~~~y~kl~l~~a~~~~~~ 114 (145)
-..++++.++++..||++.++.
T Consensus 71 v~~L~~~L~~~~~~da~~~i~~ 92 (102)
T d1d2za_ 71 VQTLFALFKKLKLHNAMRLIKD 92 (102)
T ss_dssp HHHHHHHHHHTTCHHHHHHTGG
T ss_pred HHHHHHHHHHcChHHHHHHHHH
Confidence 4678899999999999999985
Done!