RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13574
(145 letters)
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens} PDB: 2e30_B
Length = 43
Score = 72.4 bits (178), Expect = 2e-18
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 25 VKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHH 67
V +L VK + K S+NE IH + +DH++ GIEDI G +G+HH
Sbjct: 1 VDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHH 43
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.008
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 13/42 (30%)
Query: 69 RDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAME 110
+ K+ ++ Y ++ LA+K ME
Sbjct: 19 KQALKKLQAS-LKLY---------AD---DSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.048
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 36/109 (33%)
Query: 17 QGITIKPLVKILNVKTAERRKPSMNERIHERLMD----HVMAG-IEDILGRHGNHHVR-- 69
+T + + V P+ +++ L++ V++G + + G N +R
Sbjct: 342 SNLTQEQVQDY--VNKTNSHLPA-GKQVEISLVNGAKNLVVSGPPQSLYGL--NLTLRKA 396
Query: 70 --------------DRFKRFDNRFIR---PY---LLRDHQQGAEPKILE 98
+R +F NRF+ P+ LL A I +
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP----ASDLINK 441
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.081
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 40/126 (31%)
Query: 34 ERRKPSMNER-IHERLMDH-----------VMAGIED-----ILGRH----GNHHVRDRF 72
E + NE +H ++DH ++ D +G H + F
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 73 KR--FDNRFIRPYLLRDHQQGAEPKI-------LETYSK----------LAMKDAMEFMR 113
+ D RF+ + D L+ Y + ++F+
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 114 RNASTI 119
+ +
Sbjct: 554 KIEENL 559
Score = 29.4 bits (65), Expect = 0.51
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 41 NERIHERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETY 100
N+ +ERL++ I D L + + + ++ +R L+ + E E +
Sbjct: 537 NDPKYERLVN----AILDFLPKIEENLICSKYT----DLLRIALMAED----EAIFEEAH 584
Query: 101 SKLA 104
++
Sbjct: 585 KQVQ 588
Score = 27.1 bits (59), Expect = 2.5
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 24 LVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRDRF---KRFD-NRF 79
+ K+ E++ I ++ + +E+ H + + D + K FD +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEYALHRS--IVDHYNIPKTFDSDDL 464
Query: 80 IRPYL-------LRDHQQGAEP-KILETYSKLAMKDAMEFMR---RNASTIGGGSITGTD 128
I PYL + H + E + + + + + D F+ R+ ST S + +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-D-FRFLEQKIRHDSTAWNASGSILN 522
Query: 129 SMSAIFRNY 137
++ + Y
Sbjct: 523 TLQQ-LKFY 530
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding,
glutathione biosynthesis, nucleotide-binding,
phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces
cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Length = 692
Score = 28.5 bits (63), Expect = 0.75
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 40 MNERIHERLMDHVMAGIEDILGRHGNH-HVRD 70
+NE++ RL+++ A ++ L +H H ++RD
Sbjct: 386 INEKVLGRLLENDKAPLDYDLAKHFAHLYIRD 417
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 26.4 bits (59), Expect = 3.6
Identities = 4/25 (16%), Positives = 8/25 (32%), Gaps = 3/25 (12%)
Query: 113 RRNA---STIGGGSITGTDSMSAIF 134
R +T+ + TG +
Sbjct: 145 RYRGYHGNTMATMAATGQAQRRYQY 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 26.2 bits (57), Expect = 4.8
Identities = 4/40 (10%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 31 KTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRD 70
K + + + + + R + ++ ++ + G G+ + +
Sbjct: 98 KRVDSLQLTREQMLTNR-FNDLLDRMDIMFGSTGSADIEE 136
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 6.6
Identities = 7/81 (8%), Positives = 18/81 (22%), Gaps = 30/81 (37%)
Query: 73 KRFDNRFIRPYLLRDHQQG--AEPKILETYSKLAMKDA-----MEFMR-----RNASTIG 120
+ D + A + E + + G
Sbjct: 1007 SQVD-PIT--------LFVLVS--------VVEAFIASGITDPYEMYKYVHVSEVGNCSG 1049
Query: 121 GGSITGTDSMSAIFRNYTTGH 141
G + G ++ +F++
Sbjct: 1050 SG-MGGVSALRGMFKDRFKDE 1069
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol,
DI-MYO-inositol phosphate; 1.89A {Archaeoglobus
fulgidus} PDB: 2xmh_A*
Length = 232
Score = 25.6 bits (57), Expect = 7.2
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 16/58 (27%)
Query: 22 KPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDI---LGRHGNHHVRDRFKRFD 76
KPLV++ I R M + + + R+ + K
Sbjct: 37 KPLVRVGG-------CE-----IILRTMKLLSPHVSEFIIVASRYA-DDIDAFLKDKG 81
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 25.8 bits (56), Expect = 7.6
Identities = 8/61 (13%), Positives = 24/61 (39%)
Query: 56 IEDILGRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRN 115
+L R + +++R+++ +P + ++ +A +F++RN
Sbjct: 195 FFSLLFLAALILTLFLGFLHYFRPLNCFMMRNYEIIQQPMSYDNLTQRLTVEAAQFIQRN 254
Query: 116 A 116
Sbjct: 255 T 255
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 25.3 bits (56), Expect = 9.6
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 113 RRNA---STIGGGSITGTDSMSAIF 134
R S + GS+TG D F
Sbjct: 150 RWRGYHGSGVMTGSLTGLDLFHNAF 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.407
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,337,529
Number of extensions: 139058
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 28
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.5 bits)