RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13574
         (145 letters)



>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 402

 Score = 27.9 bits (61), Expect = 0.55
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 45  HERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPY--LLRDHQQGAEPKILETYSK 102
            E   D    G    LGR G  +   ++     R +  Y  L R  ++   P++L+    
Sbjct: 27  LEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLD---- 82

Query: 103 LAMKDAMEFMRRNA 116
            A K   EF+ R+A
Sbjct: 83  -AAKAGGEFLLRHA 95


>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
           [TaxId: 562]}
          Length = 759

 Score = 27.5 bits (61), Expect = 0.67
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 39  SMNERIHERLMDHVMAGIEDILGRHGNHH-VRDRFKRFDNRFIRPYLLRDH-QQGAEPKI 96
           ++N  + E+L   V    E I G   N+  V +R   F +   + Y+   +       K 
Sbjct: 445 AINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKY 504

Query: 97  LETYSKLAMKDAMEFMRRNASTIGGGSITGTDSMSAI 133
               S +A+ D    + R  +    G     DS+SAI
Sbjct: 505 SYEASLMALHD--RDVIRTMACGIAGLSVAADSLSAI 539


>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 236

 Score = 24.7 bits (53), Expect = 4.4
 Identities = 6/54 (11%), Positives = 14/54 (25%)

Query: 68  VRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRNASTIGG 121
           +R    +F    + P      +      + E + +L     +           G
Sbjct: 15  LRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSG 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,982
Number of extensions: 25303
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 10
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.9 bits)