RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13577
(75 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 79.1 bits (196), Expect = 2e-19
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 28 KEPSRGVNPDEAVAYGAAVQAGVLSGEQD--TDAIVLLDVNPL 68
KE ++ +NPDEAVAYGAAVQA +LSG++ ++LLDV PL
Sbjct: 357 KELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL 399
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 77.7 bits (192), Expect = 7e-19
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 26 FYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
F K S +N DEA+A GAA + S D++P
Sbjct: 358 FGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPY 400
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 69.6 bits (171), Expect = 5e-16
Identities = 28/44 (63%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 25 VFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
F KEP + VNPDEAVA GAAVQ GVL+G D ++LLDV PL
Sbjct: 356 FFGKEPRKDVNPDEAVAIGAAVQGGVLTG--DVKDVLLLDVTPL 397
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 68.4 bits (168), Expect = 1e-15
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 25 VFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
KEP +GVNPDE VA GAA+Q GV++G + +VLLDV PL
Sbjct: 325 ELGKEPHKGVNPDEVVAIGAAIQGGVIAG--EVKDVVLLDVTPL 366
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 65.6 bits (161), Expect = 1e-14
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 28 KEPSRGVNPDEAVAYGAAVQAGVLSGE 54
KE ++ +NPDEAVAYGAAVQA +L G+
Sbjct: 378 KELNKSINPDEAVAYGAAVQAAILIGD 404
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 62.1 bits (152), Expect = 2e-13
Identities = 21/25 (84%), Positives = 24/25 (96%)
Query: 28 KEPSRGVNPDEAVAYGAAVQAGVLS 52
K+ S+G+NPDEAVAYGAAVQAGVLS
Sbjct: 370 KKASKGINPDEAVAYGAAVQAGVLS 394
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 57.2 bits (139), Expect = 9e-12
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 25 VFYKEPSRGVNPDEAVAYGAAVQAGVLS 52
F KEP + VNPDEAVA GAAVQ GVL+
Sbjct: 356 FFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 29.7 bits (67), Expect = 0.061
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 35 NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDAH 75
DE VA GAA QA + + I V+
Sbjct: 456 ATDEYVAIGAARQAAWVLSGETEPP----AWQLTIDGVETG 492
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.17
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 3 LLGAFVVT--LVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAY----GAAVQ 47
L GA + LV AVAIA+ + F+ + +A+ G
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFV------SVRKAITVLFFIGVRCY 311
Score = 27.3 bits (60), Expect = 0.42
Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 37/86 (43%)
Query: 11 LVVAVAIAKE-EKNGVFYKEPSRGVNPDEAVA------YGA------------------- 44
++ A ++ + G+ + D A Y A
Sbjct: 1737 TLMEKAAFEDLKSKGL--------IPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 45 ---AVQAGVLSGEQDTDAIVLLDVNP 67
+Q V E ++ +NP
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINP 1814
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 27.6 bits (62), Expect = 0.32
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 35 NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDAH 75
+ G A A V + L + + PA +
Sbjct: 435 DAHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNIL 475
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC,
chaperone; 2.80A {Homo sapiens}
Length = 182
Score = 26.8 bits (60), Expect = 0.59
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 47 QAGVLSGEQDTDAIVLLDVNPL 68
L + +DV PL
Sbjct: 9 SGVDLGT--ENLYFQSMDVTPL 28
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 25.6 bits (57), Expect = 1.5
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 35 NPDEAVAYGAAVQAGVLSGEQDT 57
D A GAA A + + + +
Sbjct: 419 GGDVGPALGAARLAQIAANPEKS 441
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.30A {Thermotoga
maritima} SCOP: a.25.1.1
Length = 157
Score = 25.0 bits (54), Expect = 2.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 12 VVAVAIAKEEKNGVFYKEPSRGVNPD 37
++ VAI EE+ FY+E S N +
Sbjct: 18 ILTVAIRLEEEGERFYRELSEHFNGE 43
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 25.0 bits (55), Expect = 2.4
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 43 GAAVQAGVLSGEQDTDAIVLLDVNPL 68
G++ G ++DV PL
Sbjct: 2 GSSHHHHH-HGLVPRG-SHMVDVTPL 25
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 24.9 bits (55), Expect = 2.9
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 37 DEAVAYGAAVQAGVLSGEQDTDAIV 61
A GAA A + G+ V
Sbjct: 434 PLGSAVGAAWVAAIGGGDDLGWDDV 458
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 24.6 bits (54), Expect = 3.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 37 DEAVAYGAAVQAGVLSGE 54
EA+ G+A+ V +G
Sbjct: 476 SEAMLLGSAMMGTVAAGV 493
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 24.4 bits (54), Expect = 3.8
Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 11 LVVAVAIAKE-EKNGVFYKEPSRGVNPDEAVA------YGAAVQAGVLSGEQDTDAIVLL 63
+ + A G P AVA AAV AGVL DT A+ L+
Sbjct: 65 VAAGILSAAALGTQTSVADATGPGFTPG-AVAGHSVGEITAAVFAGVLD---DTAALSLV 120
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 24.6 bits (54), Expect = 3.9
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 37 DEAVAYGAAVQAGVLSG 53
+ A GAA+ A V +G
Sbjct: 474 KQTPALGAAMFASVAAG 490
>3o72_A EFEB, redox component of A tripartite ferrous iron TRAN; EFEB in
complex with heme, heme deferrochelatase, heme bindi
binding protein; HET: HEM; 1.95A {Escherichia coli}
PDB: 2y4f_A* 2wx6_A* 2wx7_A* 2y4d_A* 2y4e_A*
Length = 396
Score = 24.4 bits (52), Expect = 4.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 34 VNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNP 67
V +E + QAG+L+ +Q +V DV
Sbjct: 13 VARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLA 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.369
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,183,879
Number of extensions: 65443
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 29
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)