RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13577
         (75 letters)



>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
           fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 198

 Score = 50.3 bits (120), Expect = 7e-10
 Identities = 20/28 (71%), Positives = 22/28 (78%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVLS 52
            F KEP + VNPDEAVA GAAVQ GVL+
Sbjct: 171 FFGKEPRKDVNPDEAVAIGAAVQGGVLT 198


>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 193

 Score = 47.7 bits (113), Expect = 6e-09
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLS 52
           KE ++ +NPDEAVAYGAAVQA +LS
Sbjct: 169 KELNKSINPDEAVAYGAAVQAAILS 193


>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
           {Thermotoga maritima [TaxId: 2336]}
          Length = 196

 Score = 34.5 bits (78), Expect = 4e-04
 Identities = 7/24 (29%), Positives = 8/24 (33%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQA 48
                  R   P  AVA GA +  
Sbjct: 160 ETGISVIRSEEPLTAVAKGAGMVL 183


>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 324

 Score = 24.5 bits (53), Expect = 1.3
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 10  TLVVAVAIAKEEKNGVF-----YKEPSRGVNPDEAVAYGAAVQAGVLS 52
           TL   V   KE++   F     + EP +      A+A       GVLS
Sbjct: 193 TLTARVVPGKEQEGAKFSDYFEHDEPLKSAPSHRALAIFRGRNEGVLS 240


>d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Archaeon Halothiobacillus
          neapolitanus [TaxId: 927]}
          Length = 127

 Score = 23.1 bits (50), Expect = 3.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 25 VFYKEPSRGVNPDEAVAYGAA 45
           F   P  GV+ +EA A  AA
Sbjct: 17 CFKITPQPGVDREEAAAAVAA 37


>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
           {Escherichia coli [TaxId: 562]}
          Length = 163

 Score = 23.3 bits (49), Expect = 3.9
 Identities = 4/44 (9%), Positives = 10/44 (22%), Gaps = 3/44 (6%)

Query: 8   VVTLVVAVAIAKEEKNGVFYKEPSRGV---NPDEAVAYGAAVQA 48
           V+ +     +  +           R     N    +  G  +  
Sbjct: 119 VMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162


>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit
          VIc {Cow (Bos taurus) [TaxId: 9913]}
          Length = 73

 Score = 22.4 bits (48), Expect = 5.6
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 6/32 (18%)

Query: 3  LLGAFVVTLVVAVA----IAKEEKNGV--FYK 28
          ++GAF+V+L  A      +A++ K     FY+
Sbjct: 21 IVGAFMVSLGFATFYKFAVAEKRKKAYADFYR 52


>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 159

 Score = 22.6 bits (48), Expect = 5.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 55 QDTDAIVLLDVNPL 68
          ++   ++LLDV PL
Sbjct: 2  ENVQDLLLLDVTPL 15


>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId:
          562]}
          Length = 118

 Score = 22.2 bits (47), Expect = 7.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 60 IVLLDVNPL 68
          ++LLDV PL
Sbjct: 1  VLLLDVTPL 9


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.369 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 256,572
Number of extensions: 9017
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 12
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)