Query psy13578
Match_columns 94
No_of_seqs 104 out of 345
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:47:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kbv_A Sodium/hydrogen exchang 99.3 1.5E-13 5E-18 74.8 -1.9 26 69-94 2-27 (28)
2 2lco_A WALP19-P8 peptide; prol 18.5 37 0.0013 17.3 0.7 16 75-90 3-18 (26)
3 2kxa_A Haemagglutinin HA2 chai 16.4 51 0.0018 17.4 0.9 7 78-84 1-7 (30)
4 3s8m_A Enoyl-ACP reductase; ro 15.0 2.4E+02 0.0083 22.3 5.0 75 12-89 3-83 (422)
5 3k9t_A Putative peptidase; str 11.9 3.5E+02 0.012 21.9 5.1 39 47-86 197-235 (435)
6 2r0l_B Hepatocyte growth facto 10.2 59 0.002 17.8 -0.0 8 13-20 23-30 (35)
7 3nv9_A Malic enzyme; rossmann 9.5 2.7E+02 0.0093 22.9 3.7 38 49-86 198-235 (487)
8 2qt1_A Nicotinamide riboside k 8.3 1.6E+02 0.0056 19.2 1.7 31 12-42 3-33 (207)
9 1gq2_A Malic enzyme; oxidoredu 7.8 3.5E+02 0.012 22.6 3.7 38 49-86 261-298 (555)
10 1pj3_A NAD-dependent malic enz 7.6 3.6E+02 0.012 22.6 3.7 38 49-86 263-300 (564)
No 1
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=99.26 E-value=1.5e-13 Score=74.77 Aligned_cols=26 Identities=54% Similarity=1.078 Sum_probs=24.2
Q ss_pred cceeeeeecchhHHHHHHHHhccCCC
Q psy13578 69 VDKFVMCYGGLRGAVAFALVLLIDPR 94 (94)
Q Consensus 69 ~~Q~il~~gGLRGAIAfALal~lp~~ 94 (94)
++|++||||||||||||||++.+|++
T Consensus 2 ~~Q~i~~~~GLRGAvafaL~~~l~~~ 27 (28)
T 2kbv_A 2 KDQFIIAYGGLRGAIAFSLGYLLDKK 27 (28)
T ss_dssp CHHHHTTTTSSCHHHHHHHHHHHHHC
T ss_pred CceeEEEeecchHHHHHHHHHhccCC
Confidence 68999999999999999999999864
No 2
>2lco_A WALP19-P8 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=18.55 E-value=37 Score=17.27 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=10.4
Q ss_pred eecchhHHHHHHHHhc
Q psy13578 75 CYGGLRGAVAFALVLL 90 (94)
Q Consensus 75 ~~gGLRGAIAfALal~ 90 (94)
||-.|--|.|+|||+-
T Consensus 3 wwlalapalalalalw 18 (26)
T 2lco_A 3 WWLALAPALALALALW 18 (26)
T ss_pred hHHHHhHHHHHHHHHH
Confidence 4555666777777754
No 3
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=16.37 E-value=51 Score=17.45 Aligned_cols=7 Identities=71% Similarity=1.042 Sum_probs=5.8
Q ss_pred chhHHHH
Q psy13578 78 GLRGAVA 84 (94)
Q Consensus 78 GLRGAIA 84 (94)
||-||||
T Consensus 1 GlFGAIA 7 (30)
T 2kxa_A 1 GLFGAIA 7 (30)
T ss_dssp CHHHHHH
T ss_pred Ccchhhh
Confidence 7888987
No 4
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Probab=15.02 E-value=2.4e+02 Score=22.29 Aligned_cols=75 Identities=19% Similarity=0.094 Sum_probs=23.1
Q ss_pred hccchhhhhhcccccccceeEEEeeccccccchh--hhhHHHHHHHHHHhhhh-ccCCCCcceeeeeecchhH---HHHH
Q psy13578 12 DRKHHHRRSKRLNKDGSKQSHVTFPGIQQNGSAK--QFTSGVILLTAIVNQFR-IYKLTRVDKFVMCYGGLRG---AVAF 85 (94)
Q Consensus 12 ~~~~~~~~~k~~~a~~sEt~iFl~lGl~v~~~~~--~R~l~V~~L~~llN~~r-~~kI~~~~Q~il~~gGLRG---AIAf 85 (94)
+..|||.-|..+....+|-+|-=-+-=-+-...+ .-.-+|--. ++..+ ..++....+.++.-||-+| |+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~m~i~p~~~~~~~~~a~p~g~~~~v~~q---i~y~~~~~~~~~~gKvaLVTGASsGIG~AiA~ 79 (422)
T 3s8m_A 3 SSHHHHHHSSGLVPRGSHMIIHPKVRGFICTTTHPLGCERNVLEQ---IAATRARGVRNDGPKKVLVIGASSGYGLASRI 79 (422)
T ss_dssp -----------------------------CCCCCHHHHHHHHHHH---HHHHHHTCCCSSSCSEEEEESCSSHHHHHHHH
T ss_pred CcccccccccccCCCCceEEEeccccceeeecCCchhHHHHHHHH---HHHHhhccccccCCCEEEEECCChHHHHHHHH
Confidence 4455555566666888887763222100001111 111111111 22222 2566667888999998887 6666
Q ss_pred HHHh
Q psy13578 86 ALVL 89 (94)
Q Consensus 86 ALal 89 (94)
+||.
T Consensus 80 ~LA~ 83 (422)
T 3s8m_A 80 TAAF 83 (422)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 5
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=11.92 E-value=3.5e+02 Score=21.94 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhhhhccCCCCcceeeeeecchhHHHHHH
Q psy13578 47 FTSGVILLTAIVNQFRIYKLTRVDKFVMCYGGLRGAVAFA 86 (94)
Q Consensus 47 R~l~V~~L~~llN~~r~~kI~~~~Q~il~~gGLRGAIAfA 86 (94)
=+-|+..+..+...+...+ +...-..+|+.|.-|+++|.
T Consensus 197 NaSG~a~lleLar~l~~~~-~~~t~rFvf~pg~iGS~~yl 235 (435)
T 3k9t_A 197 NLSGVALITFIAKALSKLK-TKYSYRFLFAPETIGSITWL 235 (435)
T ss_dssp THHHHHHHHHHHHHHTTSC-CSSEEEEEEECTTHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCC-CCceEEEEEcCccHHHHHHH
Confidence 3567888888888777544 55666678999999999985
No 6
>2r0l_B Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 2wub_B* 2wuc_B* 3k2u_B*
Probab=10.19 E-value=59 Score=17.79 Aligned_cols=8 Identities=25% Similarity=0.742 Sum_probs=4.9
Q ss_pred ccchhhhh
Q psy13578 13 RKHHHRRS 20 (94)
Q Consensus 13 ~~~~~~~~ 20 (94)
.|+|+||+
T Consensus 23 gkrhkKr~ 30 (35)
T 2r0l_B 23 GRRHKKRT 30 (35)
T ss_pred hhcccccc
Confidence 46666664
No 7
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=9.51 E-value=2.7e+02 Score=22.94 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhhccCCCCcceeeeeecchhHHHHHH
Q psy13578 49 SGVILLTAIVNQFRIYKLTRVDKFVMCYGGLRGAVAFA 86 (94)
Q Consensus 49 l~V~~L~~llN~~r~~kI~~~~Q~il~~gGLRGAIAfA 86 (94)
.++..+..++|-.+...-+..+|-++++|.=-.+++.|
T Consensus 198 TA~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia 235 (487)
T 3nv9_A 198 TASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCL 235 (487)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHH
Confidence 56788999999999877888999999999744444433
No 8
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=8.35 E-value=1.6e+02 Score=19.24 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=15.0
Q ss_pred hccchhhhhhcccccccceeEEEeecccccc
Q psy13578 12 DRKHHHRRSKRLNKDGSKQSHVTFPGIQQNG 42 (94)
Q Consensus 12 ~~~~~~~~~k~~~a~~sEt~iFl~lGl~v~~ 42 (94)
+..|||.-|.++.+.+....+....|-+-.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsG 33 (207)
T 2qt1_A 3 SSHHHHHHSSGLVPRGSKTFIIGISGVTNSG 33 (207)
T ss_dssp -----------CCCCSCCCEEEEEEESTTSS
T ss_pred CccccccccccccccCCCCeEEEEECCCCCC
Confidence 4455555666667888888887888865544
No 9
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=7.79 E-value=3.5e+02 Score=22.60 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhhhccCCCCcceeeeeecchhHHHHHH
Q psy13578 49 SGVILLTAIVNQFRIYKLTRVDKFVMCYGGLRGAVAFA 86 (94)
Q Consensus 49 l~V~~L~~llN~~r~~kI~~~~Q~il~~gGLRGAIAfA 86 (94)
.+++.+..++|-.+...-+..||-++++|.=-.+++.|
T Consensus 261 Ta~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia 298 (555)
T 1gq2_A 261 TASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIA 298 (555)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHH
Confidence 67888999999999877788999999999544444433
No 10
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=7.61 E-value=3.6e+02 Score=22.57 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhhccCCCCcceeeeeecchhHHHHHH
Q psy13578 49 SGVILLTAIVNQFRIYKLTRVDKFVMCYGGLRGAVAFA 86 (94)
Q Consensus 49 l~V~~L~~llN~~r~~kI~~~~Q~il~~gGLRGAIAfA 86 (94)
.+++.+..++|-.+...-+..||-++++|.=-.+++.|
T Consensus 263 Ta~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia 300 (564)
T 1pj3_A 263 TAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIA 300 (564)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHH
Confidence 67888999999999877788999999999644444443
Done!