Query psy13578
Match_columns 94
No_of_seqs 104 out of 345
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 22:47:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13578.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13578hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zr9a1 g.37.1.4 (A:28-94) Zin 22.2 8.6 0.00063 22.2 -0.0 11 13-23 37-47 (67)
2 d2a6aa1 c.55.1.9 (A:1-103) Hyp 22.2 12 0.00088 22.0 0.7 32 59-90 43-81 (103)
3 d1vl6a1 c.2.1.7 (A:155-376) Ma 21.0 53 0.0038 22.3 4.0 34 50-83 6-39 (222)
4 d1okja1 c.55.1.9 (A:1-106) Hyp 19.3 13 0.00096 22.1 0.4 30 61-90 45-81 (106)
5 d1vhoa2 c.56.5.4 (A:3-69,A:153 18.5 52 0.0038 21.1 3.4 38 48-86 87-128 (248)
6 d1gq2a1 c.2.1.7 (A:280-580) Mi 16.3 65 0.0047 22.9 3.7 35 50-84 5-39 (298)
7 d1yloa2 c.56.5.4 (A:1-66,A:148 15.4 1E+02 0.0076 19.7 4.4 39 48-87 87-129 (264)
8 d1pj3a1 c.2.1.7 (A:280-573) Mi 13.4 86 0.0063 22.1 3.7 36 50-85 5-40 (294)
9 d1o0sa1 c.2.1.7 (A:296-603) Mi 11.1 1.1E+02 0.0081 21.7 3.7 35 50-84 5-39 (308)
10 d1y0ya2 c.56.5.4 (A:164-351,A: 9.3 2.2E+02 0.016 18.7 4.7 37 49-88 22-62 (255)
No 1
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.18 E-value=8.6 Score=22.18 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=8.8
Q ss_pred ccchhhhhhcc
Q psy13578 13 RKHHHRRSKRL 23 (94)
Q Consensus 13 ~~~~~~~~k~~ 23 (94)
-|+|+|+.|.+
T Consensus 37 sKkHKrrvk~L 47 (67)
T d1zr9a1 37 SKDHKKRLKQL 47 (67)
T ss_dssp CHHHHHHHHHH
T ss_pred ccHHHHHHHHh
Confidence 47889998886
No 2
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=22.18 E-value=12 Score=22.01 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=19.5
Q ss_pred hhhhccCCCCc--ceeeee-----ecchhHHHHHHHHhc
Q psy13578 59 NQFRIYKLTRV--DKFVMC-----YGGLRGAVAFALVLL 90 (94)
Q Consensus 59 N~~r~~kI~~~--~Q~il~-----~gGLRGAIAfALal~ 90 (94)
+.+...++++. +.+++. |.|+|-+++++-++.
T Consensus 43 ~~l~~~~~~~~di~~i~v~~GPGsfTglRig~s~akgla 81 (103)
T d2a6aa1 43 KLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIATVVGLV 81 (103)
T ss_dssp HHHHHHTCCGGGCSEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHhHHHhhcCCCCcchhHHHHHHHHHHHH
Confidence 33444555554 455554 348999999885554
No 3
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=20.96 E-value=53 Score=22.30 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhccCCCCcceeeeeecchhHHH
Q psy13578 50 GVILLTAIVNQFRIYKLTRVDKFVMCYGGLRGAV 83 (94)
Q Consensus 50 ~V~~L~~llN~~r~~kI~~~~Q~il~~gGLRGAI 83 (94)
+.+.|..++|-.|..+-+..||-++++|.=-.++
T Consensus 6 aaV~LAgll~a~~~~g~~l~d~riv~~GAGsAg~ 39 (222)
T d1vl6a1 6 AVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGY 39 (222)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhcEEEEEChHHHHH
Confidence 5677899999999888889999999998533333
No 4
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=19.34 E-value=13 Score=22.05 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=18.9
Q ss_pred hhccCCCCc--ceeeeee-----cchhHHHHHHHHhc
Q psy13578 61 FRIYKLTRV--DKFVMCY-----GGLRGAVAFALVLL 90 (94)
Q Consensus 61 ~r~~kI~~~--~Q~il~~-----gGLRGAIAfALal~ 90 (94)
+...++++. +.+++.- .|+|-++++|-++.
T Consensus 45 l~~~~~~~~di~~i~v~~GPGsfTglRig~s~akgla 81 (106)
T d1okja1 45 LTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLA 81 (106)
T ss_dssp HHHTTCCGGGCCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCcceeeeEEEEeeccCccccchHHHHHHHHHH
Confidence 444556554 4555543 38999999885544
No 5
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.54 E-value=52 Score=21.14 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhhhhccCCCCcceeeeeec----chhHHHHHH
Q psy13578 48 TSGVILLTAIVNQFRIYKLTRVDKFVMCYG----GLRGAVAFA 86 (94)
Q Consensus 48 ~l~V~~L~~llN~~r~~kI~~~~Q~il~~g----GLRGAIAfA 86 (94)
..+|+.+..++..+...+.+..-. .+++. |++||-+++
T Consensus 87 ~~G~a~~l~~~~~l~~~~~~~~v~-~~~~~~EE~G~~Ga~~~~ 128 (248)
T d1vhoa2 87 RASCGVLVKVLEFLKRYDHPWDVY-VVFSVQEETGCLGALTGA 128 (248)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSEEE-EEEECTTSSSHHHHHHTT
T ss_pred cHhHHHHHHHHHHHhhcCCCCceE-EEEeecccCCCCcceehh
Confidence 467888888887776555554333 33443 899987643
No 6
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=16.30 E-value=65 Score=22.85 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhccCCCCcceeeeeecchhHHHH
Q psy13578 50 GVILLTAIVNQFRIYKLTRVDKFVMCYGGLRGAVA 84 (94)
Q Consensus 50 ~V~~L~~llN~~r~~kI~~~~Q~il~~gGLRGAIA 84 (94)
+++.|..++|-.+...-+..||-++++|.=-.+++
T Consensus 5 aaV~lAglinAlki~gk~l~d~kiV~~GAGsAg~g 39 (298)
T d1gq2a1 5 ASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALG 39 (298)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHH
Confidence 57789999999998777899999999985444333
No 7
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}
Probab=15.36 E-value=1e+02 Score=19.70 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhhhhccCCCCcceeeeee----cchhHHHHHHH
Q psy13578 48 TSGVILLTAIVNQFRIYKLTRVDKFVMCY----GGLRGAVAFAL 87 (94)
Q Consensus 48 ~l~V~~L~~llN~~r~~kI~~~~Q~il~~----gGLRGAIAfAL 87 (94)
..+|+.+..++..+...+.+..- ..++. .|++||-.++-
T Consensus 87 ~~gva~lle~~r~l~~~~~~~~v-~~~~~~~EE~G~~Ga~~~~~ 129 (264)
T d1yloa2 87 RLSCYLLVTLLRELHDAELPAEV-WLVASSSEEVGLRGGQTATR 129 (264)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSEE-EEEEESCCTTSSHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcCCCCceE-EEEEEeccccCCCCcccccc
Confidence 36788887888777655555333 33333 28999988764
No 8
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.38 E-value=86 Score=22.07 Aligned_cols=36 Identities=8% Similarity=0.218 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhccCCCCcceeeeeecchhHHHHH
Q psy13578 50 GVILLTAIVNQFRIYKLTRVDKFVMCYGGLRGAVAF 85 (94)
Q Consensus 50 ~V~~L~~llN~~r~~kI~~~~Q~il~~gGLRGAIAf 85 (94)
++..|..++|-.|...-+..||-++++|.=-.+++.
T Consensus 5 a~V~lAglinAlki~gk~l~d~kiv~~GAGsAg~gi 40 (294)
T d1pj3a1 5 AAVALAGLLAAQKVISKPISEHKILFLGAGEAALGI 40 (294)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHH
Confidence 567889999999976678899999999854444443
No 9
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=11.09 E-value=1.1e+02 Score=21.69 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhccCCCCcceeeeeecchhHHHH
Q psy13578 50 GVILLTAIVNQFRIYKLTRVDKFVMCYGGLRGAVA 84 (94)
Q Consensus 50 ~V~~L~~llN~~r~~kI~~~~Q~il~~gGLRGAIA 84 (94)
+++.|..++|-.+...-+..||-++++|.=-.+++
T Consensus 5 a~V~lAglinAlki~gk~l~d~kivi~GAGaAg~g 39 (308)
T d1o0sa1 5 ASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTG 39 (308)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHcEEEEECcCHHHHH
Confidence 57789999999997666788999999985444443
No 10
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.33 E-value=2.2e+02 Score=18.73 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhhccCCCCcceeeeee----cchhHHHHHHHH
Q psy13578 49 SGVILLTAIVNQFRIYKLTRVDKFVMCY----GGLRGAVAFALV 88 (94)
Q Consensus 49 l~V~~L~~llN~~r~~kI~~~~Q~il~~----gGLRGAIAfALa 88 (94)
++++.+..++..... +..+...+++ -|+|||-+.+-.
T Consensus 22 ~g~~~lle~l~~lk~---~~~~l~~vft~qEEvG~rGA~~~a~~ 62 (255)
T d1y0ya2 22 IAVYTILEVAKQLKD---AKADVYFVATVQEEVGLRGARTSAFG 62 (255)
T ss_dssp HHHHHHHHHHHHCCS---CSSEEEEEEESCCTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc---cCCcEEEEEEcccccCCCcchhhhhh
Confidence 567776666655432 3334445555 399999876543
Done!