RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13578
         (94 letters)



>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1,
          micelle, alternative splicing, antiport, glycoprotein,
          ION transport, membrane; NMR {Synthetic}
          Length = 28

 Score = 37.3 bits (86), Expect = 2e-05
 Identities = 14/25 (56%), Positives = 21/25 (84%)

Query: 70 DKFVMCYGGLRGAVAFALVLLIDPR 94
          D+F++ YGGLRGA+AF+L  L+D +
Sbjct: 3  DQFIIAYGGLRGAIAFSLGYLLDKK 27


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 0.49
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 27/103 (26%)

Query: 7    RRLMADRKHHHRRSKRLNKDGSKQSHVTFPGIQQNGSAKQFTS--GVILLT-----AI-- 57
            +R+   R+++         DG  ++   F  I ++ ++  F S  G++  T     A+  
Sbjct: 1682 KRI---RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738

Query: 58   --VNQFRIYK---LTRVDKFVMCYGG--LRG---A-VAFALVL 89
                 F   K   L   D       G  L G   A  + A V+
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFA---GHSL-GEYAALASLADVM 1777


>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA
          recognition motif, G-tract, G-quadruplex, alternative
          splicing, RNA binding protein; NMR {Homo sapiens} PDB:
          2kg0_A
          Length = 126

 Score = 24.8 bits (54), Expect = 4.2
 Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 10 MADRKHHHRRSKRLNKDGSKQSHVTFPGIQQNGSAKQFTSGVILLTAIV 58
          M    HHH  S  L   GS  + +T  G QQ G               +
Sbjct: 1  MGSSHHHHHHSSGLVPRGSHMASMT--GGQQMGRGSNSADSANDGFVRL 47


>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
           megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
           PDB: 2vz9_A*
          Length = 2512

 Score = 24.5 bits (53), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 11  ADRKHHHRRSKRLNKDGSKQSHVTFPGIQQNGSAKQ 46
           A R +    +   N DGSK+  VTFP    +G  ++
Sbjct: 239 ARRVYATILNAGTNTDGSKEQGVTFP----SGDVQE 270


>3mx1_A ECO29KIR; type II restriction endonuclease, GIY-YIG endonuclease,
          HYDR; 2.30A {Escherichia coli} PDB: 3mx4_A* 3nic_A*
          Length = 235

 Score = 24.1 bits (51), Expect = 9.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)

Query: 10 MADRKHHHRRSKRLNKDGSKQSHV 33
          MA   HHH  S  L   GS   H 
Sbjct: 1  MASSHHHHHHSSGLVPRGSSMGHN 24


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0806    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,442,125
Number of extensions: 67282
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 8
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.3 bits)