RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13578
         (94 letters)



>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma
          constant domain 1, CH1-gamma {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 26.7 bits (59), Expect = 0.18
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 24 NKDGSKQSHVTFPGIQQNGS 43
          N         TFP + Q+  
Sbjct: 42 NSGSLSSGVHTFPAVLQSDL 61


>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase
           (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 166

 Score = 24.1 bits (52), Expect = 3.2
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 2/77 (2%)

Query: 18  RRSKRLNKDGSKQSHVTFPGIQQNGSAKQFTSGVILLTAIVNQFRIYKLTRVDKFVMCYG 77
           RR + +   G   +    P   +       T GV     +    + +    +D   MC  
Sbjct: 30  RRPEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVN 89

Query: 78  GL--RGAVAFALVLLID 92
            L  +GA     +    
Sbjct: 90  DLVVQGAEPLFFLDYYA 106


>g1r8o.1 b.42.4.1 (A:,B:) Two-chain trypsin inhibitor {Balsam
           copaiba (Copaifera langsdorffii) [TaxId: 280048]}
          Length = 167

 Score = 22.9 bits (49), Expect = 8.4
 Identities = 6/38 (15%), Positives = 12/38 (31%)

Query: 38  IQQNGSAKQFTSGVILLTAIVNQFRIYKLTRVDKFVMC 75
           ++        T G   ++     F+I +     K V  
Sbjct: 93  VKSGWKLPSVTVGNPKVSVFGGPFKIEEGKSGYKDVYS 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 335,117
Number of extensions: 12158
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 4
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.2 bits)