RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13580
(109 letters)
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 82.9 bits (206), Expect = 3e-20
Identities = 26/38 (68%), Positives = 34/38 (89%)
Query: 46 VLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNSK 83
VL+D+ + KKDVD+IVLVGGSTRIPKVQQL++ +F+ K
Sbjct: 333 VLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGK 370
Score = 68.3 bits (168), Expect = 4e-15
Identities = 21/26 (80%), Positives = 22/26 (84%)
Query: 82 SKMKETAEAYLGKKVTHAVVTVPAYF 107
KMK+ AE YLG KVTHAVVTVPAYF
Sbjct: 139 GKMKQIAEDYLGTKVTHAVVTVPAYF 164
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 82.2 bits (204), Expect = 4e-20
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 46 VLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNSK 83
L DA ++K + EIVLVGGSTRIPK+Q+L+++FFN K
Sbjct: 341 ALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGK 378
Score = 67.6 bits (166), Expect = 8e-15
Identities = 20/26 (76%), Positives = 22/26 (84%)
Query: 82 SKMKETAEAYLGKKVTHAVVTVPAYF 107
+KMKE AEAYLG KV AV+TVPAYF
Sbjct: 144 TKMKEIAEAYLGGKVHSAVITVPAYF 169
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 81.4 bits (202), Expect = 1e-19
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 46 VLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNSK 83
L DA ++K + +IVLVGGSTRIPK+Q+L+++FFN K
Sbjct: 320 ALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK 357
Score = 67.2 bits (165), Expect = 1e-14
Identities = 22/26 (84%), Positives = 24/26 (92%)
Query: 82 SKMKETAEAYLGKKVTHAVVTVPAYF 107
+KMKE AEAYLGK VT+AVVTVPAYF
Sbjct: 125 TKMKEIAEAYLGKTVTNAVVTVPAYF 150
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 73.5 bits (181), Expect = 7e-17
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 46 VLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFN 81
L A ++ ++VD + ++GG+TRIP ++Q + E F
Sbjct: 324 ALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFG 359
Score = 62.7 bits (153), Expect = 4e-13
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 82 SKMKETAEAYLGKKVTHAVVTVPAYF 107
K+K+T + +T + VP ++
Sbjct: 124 DKVKDTVKQDTKANITDVCIAVPPWY 149
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 66.0 bits (162), Expect = 2e-14
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 47 LEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFN 81
L+DA ++ D+D+++LVGG TR+P VQ+ V EFF
Sbjct: 324 LQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFG 358
Score = 61.8 bits (151), Expect = 9e-13
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 83 KMKETAEAYLGKKVTHAVVTVPAYF 107
KMK+TAE YLG+ VT AV+TVPAYF
Sbjct: 122 KMKKTAEDYLGEPVTEAVITVPAYF 146
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 63.8 bits (156), Expect = 2e-13
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 47 LEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFN 81
L+DA ++ D+D+++LVGG TR+P VQ+ V EFF
Sbjct: 324 LQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFG 358
Score = 60.3 bits (147), Expect = 3e-12
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 83 KMKETAEAYLGKKVTHAVVTVPAYF 107
KMK+TAE YLG+ VT AV+TVPAYF
Sbjct: 122 KMKKTAEDYLGEPVTEAVITVPAYF 146
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 63.4 bits (155), Expect = 2e-13
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 46 VLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFF 80
L+DA + D+D+++LVGGSTRIP VQ+ +K
Sbjct: 292 ALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL 326
Score = 56.8 bits (138), Expect = 4e-11
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 83 KMKETAEAYLGKKVTHAVVTVPAYF 107
+K AE YLG+ VT AV+TVPAYF
Sbjct: 96 YLKSYAEDYLGEPVTRAVITVPAYF 120
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.003
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 29/103 (28%)
Query: 4 FSYLFLRIKAVVTLEPQPSTSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEIVLV 63
FS FL + SP H+ L A ++ +D + +
Sbjct: 416 FSNRFLPV-----------ASPF------HSHLL--VPASDLINKDLVK-----NNVSFN 451
Query: 64 GGSTRIPKVQQLVKEFFNSKMKETAEAYLGKKVTHAVVTVPAY 106
+IP V + F+ + +++ ++ +P
Sbjct: 452 AKDIQIP-----VYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 29.2 bits (65), Expect = 0.22
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 32/114 (28%)
Query: 19 PQPSTSPEPREEINHASGL--------------NGAGALTIVL-------EDADMNKKDV 57
P+P+ +E + L + G VL E+ + D+
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 58 DEIV---LVGGSTRIPKVQQLVKEFFNSKMKETAEAYLGKKVTHAVVTVPAYFK 108
+ L T + K ++L+K + TA + + A F+
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYI------TARIMAKRPFDKK--SNSALFR 147
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 29.8 bits (67), Expect = 0.12
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 53 NKKDVDEIVLVGGSTRIPKVQQLVKEFFN 81
+ + L+GG +++ + L+ +
Sbjct: 303 EEASPEVGYLLGGGSKLRGLASLLTDTLG 331
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome,
PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS,
structural genomics; 2.03A {Escherichia coli} SCOP:
c.23.16.2
Length = 193
Score = 29.5 bits (67), Expect = 0.15
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 24 SPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEIVLVGGST-----RIPKVQQLVKE 78
+ + + G G ++TI ++ + D ++L GG + + ++
Sbjct: 57 EKQAGKTVK---GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRD 113
Query: 79 FFNSK 83
F NS
Sbjct: 114 FVNSG 118
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like
domains; structural genomics; HET: MSE CSX; 1.90A
{Anabaena variabilis atcc 29413}
Length = 365
Score = 29.3 bits (66), Expect = 0.21
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 24 SPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEIVLVGGST-----RIPKVQQLVKE 78
E+ G G + + + D +V+ GG R P + V+E
Sbjct: 44 GSRMNEKY---KGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMRRNPNTVRFVQE 100
Query: 79 FFNSK 83
Sbjct: 101 AMEQG 105
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 28.2 bits (62), Expect = 0.48
Identities = 4/29 (13%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 53 NKKDVDEIVLVGGSTRIPKVQQLVKEFFN 81
++++GG + + VK+
Sbjct: 269 EFSGYTHVMVIGGGAEL--ICDAVKKHTQ 295
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann
fold, cytosol; 2.05A {Arabidopsis thaliana}
Length = 396
Score = 27.4 bits (61), Expect = 0.92
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 50 ADMNKKDVDEIVLVGGST-----RIPKVQQLVKEFFNSK 83
D+ D +V+ GG V +VKEF NS+
Sbjct: 276 DDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSE 314
Score = 26.2 bits (58), Expect = 2.1
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 50 ADMNKKDVDEIVLVGGST-----RIPKVQQLVKEFFNSK 83
+++ D +V+ GG V +LVKEF S
Sbjct: 83 DEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSG 121
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.2
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 52 MNKKDVDEIVLVGGSTRIPKVQQLVKEF--FNSKMKETAEAYLG 93
++K+++D I++ V ++ F SK +E + ++
Sbjct: 46 LSKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVE 84
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A
{Thermococcus onnurineus} PDB: 1g2i_A
Length = 168
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 50 ADMNKKDVDEIVLVGGST-----RIPKVQQLVKEFFNSK 83
+++ + D +VL GG K + + F
Sbjct: 57 EEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDD 95
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 26.8 bits (60), Expect = 1.3
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 56 DVDEIVLVGGSTRIPKVQQLVKEFFN 81
+ +VGG+ + + F
Sbjct: 226 QTLPVYVVGGTAYLTGFSEEFSRFLG 251
Score = 25.6 bits (57), Expect = 3.5
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 83 KMKETAEAYLGKKVTHAVVTVPAYF 107
++K E LG ++ A +P
Sbjct: 79 ELKAKVERLLGSELFQAATAIPPGT 103
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
superfamily, protease hydrolase, stress response; 2.15A
{Deinococcus radiodurans}
Length = 190
Score = 26.8 bits (60), Expect = 1.5
Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 50 ADMNKKDVDEIVLVGGST------RIPKVQQLVKEFFNSK 83
+++ D D ++L GG+ + V++ +++
Sbjct: 69 SEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAG 108
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 26.4 bits (58), Expect = 2.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 38 NGAGALTIVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKE 78
N AL V + +D+ +VLVGGS+ ++ QL+ E
Sbjct: 534 NCLRALRQVSPGG--SIRDIAFVVLVGGSSLDFEIPQLITE 572
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function,
cysteine oxidation; 1.05A {Schizosaccharomyces pombe}
PDB: 4ge3_A 4ge0_A
Length = 194
Score = 25.6 bits (57), Expect = 2.9
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 22 STSPEPREEINHASGLN-GAGALTIVLEDADMNKKDVDEIVLVGG---STRI---PKVQQ 74
+ + + A + AD K D ++ GG + + P VQQ
Sbjct: 38 YVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQ 97
Query: 75 LVKEFFNSKMK 85
+VKEF+ K
Sbjct: 98 VVKEFYKKPNK 108
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 25.9 bits (58), Expect = 2.9
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 23 TSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEI 60
+P G+ A+T LE A ++ D+D +
Sbjct: 278 VAPAA-------DGVRAGRAMTRSLELAGLSPADIDHV 308
>2fex_A Conserved hypothetical protein; structural genomics, protein
structure initiative, PSI, MIDW center for structural
genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP:
c.23.16.2
Length = 188
Score = 25.7 bits (57), Expect = 3.2
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 50 ADMNKKDVDEIVLVGGST----RIPKVQQLVKEFFNSK 83
++ D+D +V+ GG + + LVK F +
Sbjct: 57 DALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRD 94
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 25.8 bits (56), Expect = 3.4
Identities = 5/34 (14%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 47 LEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFF 80
+E +D ++ +GG+T+ +++ + + +
Sbjct: 269 IEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY 300
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 25.6 bits (57), Expect = 3.5
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 23 TSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEI 60
+P+P +G A+T ++ A + D+D +
Sbjct: 295 VAPDP-------NGERAGHAITRAIQLAGLAPGDIDHV 325
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 25.8 bits (57), Expect = 3.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 60 IVLVGGSTRIPKVQQLVKEFFN 81
+VL GG +IP++ +L E F
Sbjct: 332 VVLTGGGAKIPRINELATEVFK 353
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 25.6 bits (57), Expect = 3.8
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 23 TSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEI 60
T+P P G G+ A+ ++DA + KDV +
Sbjct: 294 TAPAP-------EGEGGSRAMQAAMDDAGIEPKDVQYL 324
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 25.5 bits (55), Expect = 4.1
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 10 RIKAVVTLEPQPSTSPEPREEINHASGLN 38
RIK V E S E RE +G N
Sbjct: 10 RIKMV---EKIRVPSREEREAALKEAGYN 35
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein
struct initiative, midwest center for structural
genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 25.2 bits (56), Expect = 4.4
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 46 VLEDADMNKKDVDEIVLVGGST-----------RIPKVQQLVKEFFNSK 83
V+ + ++ + D +V G + +++K F
Sbjct: 56 VIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKG 104
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 25.2 bits (56), Expect = 4.8
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 23 TSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEI 60
T+P P +G A A+ + ++DA + VD I
Sbjct: 270 TAPAP-------NGEGAARAMKMAIDDAGLTPDKVDYI 300
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 25.2 bits (56), Expect = 4.9
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 23 TSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEI 60
TSP P G A+ + LE+A+++ + V +
Sbjct: 289 TSPHP-------EGQGAIKAIKLALEEAEISPEQVAYV 319
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 25.2 bits (56), Expect = 5.0
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 23 TSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEI 60
T+P P G A+ L+D+ + + V I
Sbjct: 274 TAPVP-------DGRGATRAIAWALKDSGLKPEMVSYI 304
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 25.2 bits (56), Expect = 5.4
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 23 TSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEI 60
T P P G A A+ L+DA + + V I
Sbjct: 268 TEPHP-------EGKGAALAMARALKDAGIAPEQVGYI 298
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2; structural genomics, PSI-2, protein structure
initiative; 2.30A {Listeria monocytogenes str}
Length = 246
Score = 25.2 bits (56), Expect = 5.5
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 55 KDVDEIVLVGGSTRIPKVQQLVKEFFNSKMKETAE 89
D+I++ + + +K++ + E
Sbjct: 46 TRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIE 80
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 25.1 bits (56), Expect = 6.2
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 23 TSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEI 60
T + G A + + L+++ + D+D I
Sbjct: 276 TGLKA-------DGREMAETIRVALDESRTDATDIDYI 306
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A
{Vibrio cholerae o1 biovar el tor}
Length = 208
Score = 24.9 bits (55), Expect = 6.4
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 6/40 (15%)
Query: 50 ADMNKKDVDEIVLVGG---STRI---PKVQQLVKEFFNSK 83
+ + D + L GG + + L+ F
Sbjct: 65 EACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQG 104
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 111
Score = 24.4 bits (53), Expect = 6.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 73 QQLVKEFFNSKMKETAEAYL 92
+Q + EFF + +T E YL
Sbjct: 32 KQAIPEFFEGRQAKTPERYL 51
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 24.9 bits (54), Expect = 7.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 38 NGAGALTIVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKE 78
N AL V N +D+ +VLVGGS+ +V QLV +
Sbjct: 532 NALRALRQVSPTG--NIRDIPFVVLVGGSSLDFEVPQLVTD 570
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A
{Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A*
2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 24.7 bits (53), Expect = 7.7
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 10 RIKAVVTLEPQPSTSPEPREEINHASGLN 38
RIK+V E + R + +G N
Sbjct: 9 RIKSV---ETVSMIPRDERLKKMQEAGYN 34
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 24.4 bits (54), Expect = 8.5
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 23 TSPEPREEINHASGLNGAGALTIVLEDADMNKKDVDEIVLVGGST 67
TSP +G A A+ L DA + + + G ST
Sbjct: 285 TSPPE-------NGAGAALAMANALRDAGIEASQIGYVNAHGTST 322
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.359
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,651,006
Number of extensions: 95036
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 66
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)