RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13580
(109 letters)
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 57.7 bits (139), Expect = 3e-12
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 29 EEINHASGLNGAGALTIVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNSK 83
EE+N + L DA ++K + +IVLVGGSTRIPK+Q+L+++FFN K
Sbjct: 115 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK 169
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 51.1 bits (122), Expect = 1e-09
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 46 VLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNSK 83
L+DA ++ D+D+++LVGG TR+P VQ+ V EFF +
Sbjct: 138 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 175
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 44.2 bits (104), Expect = 3e-07
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 76 VKEFFNSKMKETAEAYLGKKVTHAVVTVPAYF 107
+ KMK+TAE YLG+ VT AV+TVPAYF
Sbjct: 113 ISAEVLKKMKKTAEDYLGEPVTEAVITVPAYF 144
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 38.9 bits (90), Expect = 2e-05
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 61 VLVGGSTRIPKVQQLVKEFFNSKMKETAEAYLGKKVTHAVVTVPAYF 107
V G T+ +++ KMKE AEAYLGK VT+AVVTVPAYF
Sbjct: 102 VEYKGETKSFYPEEVSSMVLT-KMKEIAEAYLGKTVTNAVVTVPAYF 147
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 37.2 bits (85), Expect = 1e-04
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 46 VLEDADMNKK---DVDEIVLVGGSTRIPKVQQLVKEFFN 81
LE I L GG + + + L+++
Sbjct: 124 TLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG 162
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 27.9 bits (61), Expect = 0.17
Identities = 4/36 (11%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 46 VLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFN 81
+ + ++++GG + + VK+
Sbjct: 105 RVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQ 138
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 27.0 bits (59), Expect = 0.40
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 47 LEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNSKM 84
+ V ++ VGG + + + +E +
Sbjct: 103 RLNLRGEVDRVTSLIPVGGGSNL--IGDRFEEIAPGTL 138
>d1td6a_ a.234.1.1 (A:) Hypothetical protein MPN330 {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 286
Score = 26.5 bits (58), Expect = 0.72
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 56 DVDEIVLVGGSTRIPKVQQLVKEFFNSKMKETAEAYLGKKVTHAVVTVPAYF 107
++ +IP Q E+FNSK+K+ LG+ AYF
Sbjct: 152 ELKRFSFFQALNQIPGFQGEQVEYFNSKLKQKFTLTLGEFEIAQQPDAKAYF 203
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria
meningitidis [TaxId: 487]}
Length = 225
Score = 25.9 bits (55), Expect = 1.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 52 MNKKDVDEIVLVGGSTRIPK 71
M K+++ I+ S +P
Sbjct: 1 MEKQNIAVILARQNSKGLPL 20
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 25.5 bits (55), Expect = 1.5
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 60 IVLVGGSTRIP----KVQQLVKEFFNSKMKETAEAYLGK 94
IVL GGST P ++++ +K+ + ++ + L K
Sbjct: 148 IVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSK 186
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 24.7 bits (53), Expect = 2.5
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 14 VVTLEPQPSTSPE----PREEINHASGLNGAGALTIVLEDADMNKKDVDEIVLVGGSTRI 69
V+T+ + PE P ++G++ +I+ D D+ K V+ GG+T
Sbjct: 101 VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY 160
Query: 70 P 70
P
Sbjct: 161 P 161
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 23.6 bits (51), Expect = 6.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 38 NGAGALTIVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKE 78
N AL V + +D+ +VLVGGS+ ++ QL+ E
Sbjct: 129 NCLRALRQVSPGG--SIRDIAFVVLVGGSSLDFEIPQLITE 167
>d1qb5d_ b.40.2.1 (D:) Heat-labile toxin {Escherichia coli, type
IIB [TaxId: 562]}
Length = 99
Score = 23.1 bits (49), Expect = 7.4
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 43 LTIVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNSKMKETAEA 90
LT + D + N + + GG RI + + ++M++ A A
Sbjct: 23 LTKYISDINNNTDGMYVVSSTGGVWRISRAKDYPDNVMTAEMRKIAMA 70
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 23.2 bits (50), Expect = 8.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 53 NKKDVDEIVLVGGSTRIPKVQQLVKE 78
N +D+ +VLVGGS+ +V QLV +
Sbjct: 142 NIRDIPFVVLVGGSSLDFEVPQLVTD 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.359
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,412
Number of extensions: 16185
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 20
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)