BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13585
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QB6|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB6|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB7|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB7|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB8|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
 pdb|2QB8|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
          Length = 397

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 19/145 (13%)

Query: 6   SIADFLTQSKHLS-ENPSPCDTIHVVLGNESCDLDSAVSAILYAY--FLVCNGDMR---- 58
           ++ +FL   K L     +  D + + +GNES D+DS  SAI Y+Y  ++   G       
Sbjct: 7   TVPEFLAHLKSLPISKIASNDVLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKK 66

Query: 59  ----VLPMLNIPQKQLPIKTEVVYFLQENSICLENLIF-RDSINLEQ-LSQSGKLKVTLV 112
               ++P+++IP++ L ++ +V+Y L++  I  E L F  D  +L+Q +SQ  +L   LV
Sbjct: 67  KGSFIVPIIDIPREDLSLRRDVMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELNSYLV 126

Query: 113 DHHVLANQDKFLKPY---VIEILDH 134
           D++   +  K LK Y   V+ I+DH
Sbjct: 127 DNN---DTPKNLKNYIDNVVGIIDH 148


>pdb|2EB0|A Chain A, Crystal Structure Of Methanococcus Jannaschii Putative
           Family Ii Inorganic Pyrophosphatase
 pdb|2EB0|B Chain B, Crystal Structure Of Methanococcus Jannaschii Putative
           Family Ii Inorganic Pyrophosphatase
          Length = 307

 Score = 31.6 bits (70), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 22/113 (19%)

Query: 27  IHVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSIC 86
           +  V+G+++ D DS  SAI+ AYFL C            P +   I  E  + L++  + 
Sbjct: 1   MRYVVGHKNPDTDSIASAIVLAYFLDC-----------YPARLGDINPETEFVLRKFGVM 49

Query: 87  LENLIFRDSINLEQLSQSGKLKVTLVDHHVLANQ-DKFLKPYVIEILDHRPVS 138
              LI          S  GK ++ LVDH   +   D   +  +I I+DH  V 
Sbjct: 50  EPELI---------ESAKGK-EIILVDHSEKSQSFDDLEEGKLIAIIDHHKVG 92


>pdb|3C8V|A Chain A, Crystal Structure Of Putative Acetyltransferase
           (Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
           2.28 A Resolution
 pdb|3C8V|B Chain B, Crystal Structure Of Putative Acetyltransferase
           (Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
           2.28 A Resolution
 pdb|3C8V|C Chain C, Crystal Structure Of Putative Acetyltransferase
           (Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
           2.28 A Resolution
 pdb|3C8V|D Chain D, Crystal Structure Of Putative Acetyltransferase
           (Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
           2.28 A Resolution
          Length = 496

 Score = 26.2 bits (56), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 87  LENLIFRDSINLEQLSQSGK------LKVTLVDHHVLANQDKFLKPYVIEILDHRPVSPS 140
           L + +++  I  ++L + G+        + L D  V+  +D FL   ++    H P SP 
Sbjct: 94  LHSALYKSDIRGDELKRKGQHFVCDGKXIPLHDDEVITIKDSFLNKTLVHSNSHDPESPE 153

Query: 141 E 141
           E
Sbjct: 154 E 154


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,973,666
Number of Sequences: 62578
Number of extensions: 138363
Number of successful extensions: 337
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 5
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)