Query psy13585
Match_columns 142
No_of_seqs 109 out of 701
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:57:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qb7_A Exopolyphosphatase; A/B 99.9 1.6E-26 5.6E-31 194.4 9.2 135 6-140 7-154 (397)
2 2haw_A Manganese-dependent ino 99.7 1.4E-16 4.9E-21 129.5 11.9 98 28-139 4-102 (309)
3 1k20_A Manganese-dependent ino 99.7 2.3E-16 7.7E-21 128.6 11.4 99 28-139 3-103 (310)
4 2eb0_A Manganese-dependent ino 99.7 2.9E-16 1E-20 127.5 10.5 90 28-138 2-92 (307)
5 1wpn_A Manganese-dependent ino 99.6 2.5E-14 8.4E-19 108.3 11.9 98 28-139 4-102 (188)
6 3dev_A SH1221; alpha-beta prot 98.9 1.5E-08 5.1E-13 83.0 10.3 105 11-140 5-112 (320)
7 3dma_A Exopolyphosphatase-rela 98.5 2.2E-07 7.5E-12 76.7 6.1 102 26-140 22-131 (343)
8 2zxr_A Single-stranded DNA spe 95.0 0.08 2.7E-06 47.3 8.4 43 6-54 57-99 (666)
9 3ogk_Q JAZ1 incomplete degron 39.0 26 0.00089 17.4 2.3 17 4-20 2-18 (22)
10 3fz4_A Putative arsenate reduc 36.2 76 0.0026 21.3 5.3 58 27-92 4-61 (120)
11 3ogl_Q JAZ1 incomplete degron 35.2 18 0.00062 17.8 1.3 15 3-17 6-20 (21)
12 2r2q_A Gamma-aminobutyric acid 34.3 27 0.00093 23.6 2.6 42 3-45 52-93 (110)
13 1eo6_A GATE-16, golgi-associat 30.2 34 0.0012 23.4 2.6 42 3-45 53-94 (117)
14 1vi1_A Fatty acid/phospholipid 26.7 98 0.0034 24.8 5.2 25 29-53 293-317 (345)
15 2p8t_A Hypothetical protein PH 26.5 27 0.00092 26.4 1.6 46 6-53 143-188 (200)
16 3e5y_A TRMH family RNA methylt 26.0 35 0.0012 24.2 2.2 34 5-38 65-112 (160)
17 3n4j_A RNA methyltransferase; 24.9 64 0.0022 22.9 3.4 33 6-38 65-114 (165)
18 3gkx_A Putative ARSC family re 23.8 1.3E+02 0.0044 20.1 4.6 57 28-92 6-62 (120)
19 3rdw_A Putative arsenate reduc 22.8 1.7E+02 0.0057 19.5 5.1 58 28-93 7-65 (121)
20 3rui_B Autophagy-related prote 20.2 92 0.0032 21.3 3.3 42 3-45 55-96 (118)
No 1
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A 2qb8_A*
Probab=99.93 E-value=1.6e-26 Score=194.35 Aligned_cols=135 Identities=30% Similarity=0.489 Sum_probs=110.6
Q ss_pred hHHHHHHHHhhhhcCC-CCCCCeEEEeCCCCCCHHHHHHHHHHHHHHhcCC----------CCceEecccccCcCCCCCh
Q psy13585 6 SIADFLTQSKHLSENP-SPCDTIHVVLGNESCDLDSAVSAILYAYFLVCNG----------DMRVLPMLNIPQKQLPIKT 74 (142)
Q Consensus 6 ~l~~FL~~~k~~l~~~-~~~~~~~iV~Gnes~DlDSivSAi~~Ay~~~~~~----------~~~~vPvini~r~~~~lr~ 74 (142)
+|++||+++|+++.+. .+....++|+||++||+||++|||+|||++.+.+ ...++|++|+||.++++++
T Consensus 7 ~l~~fl~~~~~~l~~~~~~~~~~iiV~gH~~pD~DaigSalala~~l~~~gk~~~~~~~~~~~~~v~v~~~~r~~~~~~~ 86 (397)
T 2qb7_A 7 TVPEFLAHLKSLPISKIASNDVLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKKGSFIVPIIDIPREDLSLRR 86 (397)
T ss_dssp CHHHHHHHHHHSCHHHHSBTTEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHSGGGSSSCCCCCCEEECSSCGGGGGGCH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEeCCCCCCHHHHHHHHHHHHHHHhcCCccccccccCCccEEEEEcccccccccCH
Confidence 4999999999987653 4677899999999999999999999999986542 2357999999999999999
Q ss_pred HHHHHHHHcCCCCCceeeccccc-h-hhhccCCCceEEEecCCCCCcccCCCCCceEEEeccCCCCCC
Q psy13585 75 EVVYFLQENSICLENLIFRDSIN-L-EQLSQSGKLKVTLVDHHVLANQDKFLKPYVIEILDHRPVSPS 140 (142)
Q Consensus 75 E~~~~L~~~gi~~~~L~f~ddi~-~-~~l~~~~~~~v~LVDhn~l~~~~~~~~~~V~~IIDHH~~~~~ 140 (142)
|+.++|+.++++.+.++|.+++. + ..+.......++|||||.+++....+...++.|||||+.++.
T Consensus 87 e~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~~~~~~~~~~iIDHH~~~~~ 154 (397)
T 2qb7_A 87 DVMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELNSYLVDNNDTPKNLKNYIDNVVGIIDHHFDLQK 154 (397)
T ss_dssp HHHHHHHHTTCCGGGSCCHHHHHHHHHHSCTTCEEEEEEESCSSCCGGGTTTCCEEEEEEECSCCCCC
T ss_pred HHHHHHHHcCCChhhcccHHHHHHHHHhhcccCCCeEEEecCCCcccCcccccccEEEEEcCCCCCCC
Confidence 99999999999999998876652 0 112112234799999999988665567889999999998654
No 2
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Probab=99.69 E-value=1.4e-16 Score=129.45 Aligned_cols=98 Identities=23% Similarity=0.249 Sum_probs=77.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcCCCCceEecccccCcCCCCChHHHHHHHHcCCCCCceeeccccchhhhccCCCc
Q psy13585 28 HVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLENLIFRDSINLEQLSQSGKL 107 (142)
Q Consensus 28 ~iV~Gnes~DlDSivSAi~~Ay~~~~~~~~~~vPvini~r~~~~lr~E~~~~L~~~gi~~~~L~f~ddi~~~~l~~~~~~ 107 (142)
++|+||++||.||++||++||+++.+. +..+.|++ .+++++|+.|+|+.++++.+.++. ++ . ....
T Consensus 4 i~I~gH~~pD~DaigSalal~~~l~~~-g~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~~--~~-----~-~~~~ 69 (309)
T 2haw_A 4 ILIFGHQNPDTDTICSAIAYADLKNKL-GFNAEPVR-----LGQVNGETQYALDYFKQESPRLVE--TA-----A-NEVN 69 (309)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHHHHT-TCCEEEEE-----SSCCCHHHHHHHHHTTCCCCEECS--CS-----T-TTCS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHHHc-CCCeEEEE-----CCCCCHHHHHHHHHcCCCcHHhhh--hc-----c-CCCC
Confidence 689999999999999999999998875 33466764 567889999999999998777652 22 1 1123
Q ss_pred eEEEecCCCCCcccCCC-CCceEEEeccCCCCC
Q psy13585 108 KVTLVDHHVLANQDKFL-KPYVIEILDHRPVSP 139 (142)
Q Consensus 108 ~v~LVDhn~l~~~~~~~-~~~V~~IIDHH~~~~ 139 (142)
.++|||||.+++....+ .+.++.|||||+.++
T Consensus 70 ~vilVD~~~~~r~~~~~~~~~~~~iIDHH~~~~ 102 (309)
T 2haw_A 70 GVILVDHNERQQSIKDIEEVQVLEVIDHHRIAN 102 (309)
T ss_dssp EEEEESCCCGGGSCTTGGGSEEEEEEECSCCCS
T ss_pred EEEEEeCCCcccchhhhhhcCEEEEECCCcCCC
Confidence 69999999998755444 367999999999865
No 3
>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase, binuclear metal centre, hydrolas; 1.50A {Streptococcus gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A
Probab=99.68 E-value=2.3e-16 Score=128.58 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=77.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHH-hcCCCCceEecccccCcCCCCChHHHHHHHHcCCCCCceeeccccchhhhccCCC
Q psy13585 28 HVVLGNESCDLDSAVSAILYAYFL-VCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLENLIFRDSINLEQLSQSGK 106 (142)
Q Consensus 28 ~iV~Gnes~DlDSivSAi~~Ay~~-~~~~~~~~vPvini~r~~~~lr~E~~~~L~~~gi~~~~L~f~ddi~~~~l~~~~~ 106 (142)
++|+||++||.||++||++|||++ .+. +..+.|+. .+++++|+.|+|+.++++.+.++ ++++ ....
T Consensus 3 i~I~gH~~pD~DaigSalal~~~l~~~~-g~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~--~~~~-----~~~~ 69 (310)
T 1k20_A 3 ILVFGHQNPDSDAIGSSYAFAYLAREAY-GLDTEAVA-----LGEPNEETAFVLDYFGVAAPRVI--TSAK-----AEGA 69 (310)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHHHHHH-CCCEEECB-----SSCCCHHHHHHHHHHTCCCCCBC--SCTG-----GGTC
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHHhcc-CCceEEEE-----CCCCCHHHHHHHHHcCCCchhhh--hhhc-----cccC
Confidence 689999999999999999999998 664 33466664 46788999999999999887765 3221 1011
Q ss_pred ceEEEecCCCCCcccCCC-CCceEEEeccCCCCC
Q psy13585 107 LKVTLVDHHVLANQDKFL-KPYVIEILDHRPVSP 139 (142)
Q Consensus 107 ~~v~LVDhn~l~~~~~~~-~~~V~~IIDHH~~~~ 139 (142)
..++|||||.+.+....+ .+.++.|||||+.++
T Consensus 70 ~~vilVD~~~~~r~~~~~~~~~~~~iIDHH~~~~ 103 (310)
T 1k20_A 70 EQVILTDHNEFQQSVADIAEVEVYGVVDHHRVAN 103 (310)
T ss_dssp SEEEEESCCCGGGSCTTGGGSEEEEEEECSCCCS
T ss_pred ceEEEEcCCCcccccccccccCEEEEECCCcCCC
Confidence 369999999998755445 367999999999864
No 4
>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2 domain, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=2.9e-16 Score=127.52 Aligned_cols=90 Identities=31% Similarity=0.382 Sum_probs=73.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcCCCCceEecccccCcCCCCChHHHHHHHHcCCCCCceeeccccchhhhccCCCc
Q psy13585 28 HVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLENLIFRDSINLEQLSQSGKL 107 (142)
Q Consensus 28 ~iV~Gnes~DlDSivSAi~~Ay~~~~~~~~~~vPvini~r~~~~lr~E~~~~L~~~gi~~~~L~f~ddi~~~~l~~~~~~ 107 (142)
++|+||++||.||++||+++||++ . ..|++ .+++++|+.|+|+.++++.+.++.. . . .-
T Consensus 2 i~I~gH~~pD~DaigSalal~~~l-~-----~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~~~--~-----~---~~ 60 (307)
T 2eb0_A 2 RYVVGHKNPDTDSIASAIVLAYFL-D-----CYPAR-----LGDINPETEFVLRKFGVMEPELIES--A-----K---GK 60 (307)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHH-T-----SEEEE-----SSCCCHHHHHHHHHHTCCCCEECCC--C-----T---TC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHh-C-----CeEEE-----cCCCCHHHHHHHHHcCCCchhhhhh--c-----c---CC
Confidence 589999999999999999999998 2 35654 5788999999999999998877632 1 1 12
Q ss_pred eEEEecCCCCCcccCCC-CCceEEEeccCCCC
Q psy13585 108 KVTLVDHHVLANQDKFL-KPYVIEILDHRPVS 138 (142)
Q Consensus 108 ~v~LVDhn~l~~~~~~~-~~~V~~IIDHH~~~ 138 (142)
.++|||||.+++....+ ...++.|||||+.+
T Consensus 61 ~vilVD~~~~~r~~~~~~~~~~~~iIDHH~~~ 92 (307)
T 2eb0_A 61 EIILVDHSEKSQSFDDLEEGKLIAIIDHHKVG 92 (307)
T ss_dssp EEEEESCCCGGGSCTTGGGSEEEEEEESSCCC
T ss_pred eEEEEeCCCcccchhhcccCCEEEEEcCCCCc
Confidence 79999999998765444 36799999999986
No 5
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=99.57 E-value=2.5e-14 Score=108.28 Aligned_cols=98 Identities=24% Similarity=0.273 Sum_probs=73.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcCCCCceEecccccCcCCCCChHHHHHHHHcCCCCCceeeccccchhhhccCCCc
Q psy13585 28 HVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLENLIFRDSINLEQLSQSGKL 107 (142)
Q Consensus 28 ~iV~Gnes~DlDSivSAi~~Ay~~~~~~~~~~vPvini~r~~~~lr~E~~~~L~~~gi~~~~L~f~ddi~~~~l~~~~~~ 107 (142)
++|+||++||.|+++||+++++++.+.+. .+.+++ ..++++++.|+|+.+|++.+.++ +++ . ....
T Consensus 4 i~I~gH~~pD~DaigSa~al~~~l~~~g~-~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~--~~~-----~-~~~~ 69 (188)
T 1wpn_A 4 ILIFGHQNPDTDTICSAIAYADLKNKLGF-NAEPVR-----LGQVNGETQYALDYFKQESPRLV--ETA-----A-NEVN 69 (188)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHHHHTTC-CEEEEE-----SSCCCHHHHHHHHHTTCCCCEEC--SCS-----T-TTCS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHhCC-ceEEEE-----CCCCCHHHHHHHHHcCCCchhhh--hhh-----c-cCCC
Confidence 68999999999999999999999877532 344543 35788999999999999866654 222 1 1123
Q ss_pred eEEEecCCCCCcccCCC-CCceEEEeccCCCCC
Q psy13585 108 KVTLVDHHVLANQDKFL-KPYVIEILDHRPVSP 139 (142)
Q Consensus 108 ~v~LVDhn~l~~~~~~~-~~~V~~IIDHH~~~~ 139 (142)
.+++||||.+.+....+ ...++.|||||+.+.
T Consensus 70 ~vi~VD~~~~~r~~~~~~~~~~vivIDHH~~~~ 102 (188)
T 1wpn_A 70 GVILVDHNERQQSIKDIEEVQVLEVIDHHRIAN 102 (188)
T ss_dssp EEEEESCCCGGGSCTTGGGSEEEEEEECSCCCS
T ss_pred eEEEEeCCCcccchhhhccCCeEEEECCCCCCC
Confidence 69999999987643333 367899999999854
No 6
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Probab=98.85 E-value=1.5e-08 Score=83.05 Aligned_cols=105 Identities=11% Similarity=0.113 Sum_probs=62.4
Q ss_pred HHHHhhhhcCCCCCCCeEEEeCCCCCCHHHHHHHHHHHHHHhcC-CCCceEecccccCcCCCCChHHHHHHHHcCCCCCc
Q psy13585 11 LTQSKHLSENPSPCDTIHVVLGNESCDLDSAVSAILYAYFLVCN-GDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLEN 89 (142)
Q Consensus 11 L~~~k~~l~~~~~~~~~~iV~Gnes~DlDSivSAi~~Ay~~~~~-~~~~~vPvini~r~~~~lr~E~~~~L~~~gi~~~~ 89 (142)
+++.++.+. ...-.+|+||.+||.|++.||+++++++.+. ++..++.+.+ ..+...|+ ..
T Consensus 5 ~~~i~~~i~----~~~~i~I~~H~~PD~DaigSalal~~~l~~~~~~k~v~~~~~-------~~~~~~fl-~~------- 65 (320)
T 3dev_A 5 FNEIMQRVK----EAETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGE-------AEPSLSFI-GD------- 65 (320)
T ss_dssp HHHHHHHHH----TCSEEEEECBSSCCHHHHHHHHHHHHHHHHHCTTSEEEECCC-------CCGGGTTT-CC-------
T ss_pred HHHHHHHHh----cCCeEEEEeCCCCCchHHHHHHHHHHHHHHhCCCCEEEEeCC-------Ccchhhhc-cC-------
Confidence 344555553 2345699999999999999999999988765 2332222211 22222222 10
Q ss_pred eeeccccchhhhccCCCceEEEecCCCCCcccCC-C-CCceEEEeccCCCCCC
Q psy13585 90 LIFRDSINLEQLSQSGKLKVTLVDHHVLANQDKF-L-KPYVIEILDHRPVSPS 140 (142)
Q Consensus 90 L~f~ddi~~~~l~~~~~~~v~LVDhn~l~~~~~~-~-~~~V~~IIDHH~~~~~ 140 (142)
.+++..... ..-.+++||+|.+.+.... + ...++.|||||+.++.
T Consensus 66 ---~~~i~~~~~---~~~lvi~VD~~~~~r~~~~~~~~~~~vivIDHH~~~~~ 112 (320)
T 3dev_A 66 ---LDEIDDSVY---SDALVIVCDTANAPRIDDQRYLNGQSLIKIDHHPATDQ 112 (320)
T ss_dssp ---CCCCCSSTT---TTCEEEEESCSSGGGBSSGGGGSSSCEEEEECSCSSCC
T ss_pred ---ccccccccc---CCCEEEEECCCCchhcchhhhhccCCEEEEcCCCCCCC
Confidence 112211111 1246899999998764322 1 3578889999998653
No 7
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=98.45 E-value=2.2e-07 Score=76.71 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=57.9
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHHhcCCCCceEecccccCcCCCCChHHHHHHHHcCCCCCceeecccc-ch--hhhc
Q psy13585 26 TIHVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLENLIFRDSI-NL--EQLS 102 (142)
Q Consensus 26 ~~~iV~Gnes~DlDSivSAi~~Ay~~~~~~~~~~vPvini~r~~~~lr~E~~~~L~~~gi~~~~L~f~ddi-~~--~~l~ 102 (142)
.-++|+||.+||.|++.||++++.++.+.+ ..+..++ ..+......|+-..- .+...++. +. ..+.
T Consensus 22 ~~i~I~~H~~pD~DaiGS~~~l~~~l~~~g-~~~~~~~-----~~~~~~~~~fl~~~~-----~i~~~~~~~~~~~~~~~ 90 (343)
T 3dma_A 22 DKIVIVSHVSPDGDAIGSSLGLYHFLDSQD-KIVNVIV-----PNAFPDFLKWMPGSK-----DILLYDRYQEFADKLIM 90 (343)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHHHHHHTS-CEEEEEE-----SSCCCGGGTTSTTGG-----GCEETTTCHHHHHHHHH
T ss_pred CeEEEEecCCCChHHHHHHHHHHHHHHHcC-CCEEEEC-----CCCCchHhhhccCcc-----hhcccccChHHHhhccc
Confidence 457999999999999999999999987753 3333332 122333332321111 11111110 00 0011
Q ss_pred cCCCceEEEecCCCCCcccC---CC--CCceEEEeccCCCCCC
Q psy13585 103 QSGKLKVTLVDHHVLANQDK---FL--KPYVIEILDHRPVSPS 140 (142)
Q Consensus 103 ~~~~~~v~LVDhn~l~~~~~---~~--~~~V~~IIDHH~~~~~ 140 (142)
..-.+++||+|.+..... .+ ....+-|||||+.+..
T Consensus 91 --~~~lvi~VD~~~~~r~~~~~~~l~~~~~~~ivIDHH~~~~~ 131 (343)
T 3dma_A 91 --EADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPED 131 (343)
T ss_dssp --HCSEEEEESCSSGGGGTTCHHHHHHCCSEEEEEECCSSCCS
T ss_pred --CCCEEEEEeCCChHHhchhHHHHHhCCCCEEEEcCCCCCCC
Confidence 124789999999886432 11 1345569999998653
No 8
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=95.04 E-value=0.08 Score=47.26 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhhcCCCCCCCeEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy13585 6 SIADFLTQSKHLSENPSPCDTIHVVLGNESCDLDSAVSAILYAYFLVCN 54 (142)
Q Consensus 6 ~l~~FL~~~k~~l~~~~~~~~~~iV~Gnes~DlDSivSAi~~Ay~~~~~ 54 (142)
.|++-..+.++.+. . ..-++|+||. |.|.+.|+.++..++.+.
T Consensus 57 dm~~Av~~i~~aI~---~-~ekI~I~GH~--D~DGi~Saa~L~~~L~~l 99 (666)
T 2zxr_A 57 GLREAAALLEEALR---Q-GKRIRVHGDY--DADGLTGTAILVRGLAAL 99 (666)
T ss_dssp THHHHHHHHHHHHH---T-TCEEEEECCS--SHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH---c-CCeEEEEecc--CCchHHHHHHHHHHHHHc
Confidence 45665666666664 2 3456899999 999999999999988775
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=39.00 E-value=26 Score=17.38 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy13585 4 NLSIADFLTQSKHLSEN 20 (142)
Q Consensus 4 ~~~l~~FL~~~k~~l~~ 20 (142)
+.||..||..-|.++..
T Consensus 2 k~SLqRFleKRk~R~~~ 18 (22)
T 3ogk_Q 2 RASLHRFLEKRKDRVTS 18 (26)
T ss_pred chhHHHHHHHHHHHhhc
Confidence 46899999999998753
No 10
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=36.17 E-value=76 Score=21.31 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=41.0
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHHhcCCCCceEecccccCcCCCCChHHHHHHHHcCCCCCceee
Q psy13585 27 IHVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLENLIF 92 (142)
Q Consensus 27 ~~iV~Gnes~DlDSivSAi~~Ay~~~~~~~~~~vPvini~r~~~~lr~E~~~~L~~~gi~~~~L~f 92 (142)
++.+.|+.+|+. |-=+.+|+..+.-.-..+-+ +++..-+.|..-++++.|++...|+-
T Consensus 4 Mi~iY~~~~C~~----c~ka~~~L~~~gi~~~~~di----~~~~~~~~eL~~~l~~~g~~~~~l~n 61 (120)
T 3fz4_A 4 MLTFYEYPKCST----CRRAKAELDDLAWDYDAIDI----KKNPPAASLIRNWLENSGLELKKFFN 61 (120)
T ss_dssp SEEEEECSSCHH----HHHHHHHHHHHTCCEEEEET----TTSCCCHHHHHHHHHHSCCCGGGGBC
T ss_pred eEEEEeCCCChH----HHHHHHHHHHcCCceEEEEe----ccCchhHHHHHHHHHHcCCCHHHHhC
Confidence 567889999985 56667788765311112333 35677888999999999998877764
No 11
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=35.21 E-value=18 Score=17.78 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.0
Q ss_pred chhhHHHHHHHHhhh
Q psy13585 3 ANLSIADFLTQSKHL 17 (142)
Q Consensus 3 ~~~~l~~FL~~~k~~ 17 (142)
.+.||..||+..|.+
T Consensus 6 Rk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 6 RRASLHRFLEKRKDR 20 (26)
T ss_pred HHHHHHHHHHHhhcc
Confidence 357899999988765
No 12
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=34.31 E-value=27 Score=23.63 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=31.6
Q ss_pred chhhHHHHHHHHhhhhcCCCCCCCeEEEeCCCCCCHHHHHHHH
Q psy13585 3 ANLSIADFLTQSKHLSENPSPCDTIHVVLGNESCDLDSAVSAI 45 (142)
Q Consensus 3 ~~~~l~~FL~~~k~~l~~~~~~~~~~iV~Gnes~DlDSivSAi 45 (142)
..+.+.+|+.-.|.++ .+.+.+.+.++++|..+-+|+.++.|
T Consensus 52 ~~~tv~~~~~~iRk~l-~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 52 SDLTVGQFYFLIRKRI-HLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TTCBHHHHHHHHHHHT-TCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCCcHHHHHHHHHHHh-cCCCCCcEEEEECCEecCccChHHHH
Confidence 3457888888888877 34567778889999888888776665
No 13
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=30.18 E-value=34 Score=23.42 Aligned_cols=42 Identities=7% Similarity=0.160 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHhhhhcCCCCCCCeEEEeCCCCCCHHHHHHHH
Q psy13585 3 ANLSIADFLTQSKHLSENPSPCDTIHVVLGNESCDLDSAVSAI 45 (142)
Q Consensus 3 ~~~~l~~FL~~~k~~l~~~~~~~~~~iV~Gnes~DlDSivSAi 45 (142)
..+.+.+|+.-.|.++ .+.+.+.+.++++|..+-+|+.++.|
T Consensus 53 ~~~tv~~f~~~iRk~l-~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 53 SDITVAQFMWIIRKRI-QLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp TTSBHHHHHHHHHHHH-TCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCCCHHHHHHhhHHhh-cCCCCCcEEEEECCEecCccchHHHH
Confidence 3457888888888877 34567778888899888888776665
No 14
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=26.74 E-value=98 Score=24.80 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhc
Q psy13585 29 VVLGNESCDLDSAVSAILYAYFLVC 53 (142)
Q Consensus 29 iV~Gnes~DlDSivSAi~~Ay~~~~ 53 (142)
++.|+.++|..|++.||.+|....+
T Consensus 293 vi~~~g~a~~~~i~~ai~~A~~~a~ 317 (345)
T 1vi1_A 293 VIKAHGSSDSNAVFRAIRQAREMVS 317 (345)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999987654
No 15
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=26.53 E-value=27 Score=26.41 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhhhcCCCCCCCeEEEeCCCCCCHHHHHHHHHHHHHHhc
Q psy13585 6 SIADFLTQSKHLSENPSPCDTIHVVLGNESCDLDSAVSAILYAYFLVC 53 (142)
Q Consensus 6 ~l~~FL~~~k~~l~~~~~~~~~~iV~Gnes~DlDSivSAi~~Ay~~~~ 53 (142)
+|++++....+.+.....++.++++.|...+ |++.||+--|+++.+
T Consensus 143 ~l~~~~~ela~~l~~~~~gd~iIi~~~~~~~--~a~~s~~~~~~~~~~ 188 (200)
T 2p8t_A 143 PLKEMYPEVAKKIVDYEDGDAVIITWAETPA--KALKSAIHVAYILKK 188 (200)
T ss_dssp BGGGTCHHHHHHCCSCCTTCEEEEEECSSHH--HHHHHHHHHHHHHHG
T ss_pred cHHHHhHHHHHHhcCCCCCCEEEEEeCCChH--HHHHHHHHHHHHhcC
Confidence 5777777777777556677888888887665 689999999999865
No 16
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=26.00 E-value=35 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=22.2
Q ss_pred hhHHHHHHHHhhh----hc-C---------CCCCCCeEEEeCCCCCCH
Q psy13585 5 LSIADFLTQSKHL----SE-N---------PSPCDTIHVVLGNESCDL 38 (142)
Q Consensus 5 ~~l~~FL~~~k~~----l~-~---------~~~~~~~~iV~Gnes~Dl 38 (142)
.++.+||+.+|+. +. . ..-.++..+|+|||.-=+
T Consensus 65 ~~l~~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gl 112 (160)
T 3e5y_A 65 RDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGL 112 (160)
T ss_dssp SSHHHHHHHHCCCGGGEEEECSTTCEEGGGSCCCTTCEEEEEBTTTBS
T ss_pred CCHHHHHHHHHhCCCEEEEEecCCCccccccCCCCCEEEEECCCcCCC
Confidence 3688999988731 11 1 123467889999997554
No 17
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=24.91 E-value=64 Score=22.94 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=21.3
Q ss_pred hHHHHHHHHhh---h----h-cC---------CCCCCCeEEEeCCCCCCH
Q psy13585 6 SIADFLTQSKH---L----S-EN---------PSPCDTIHVVLGNESCDL 38 (142)
Q Consensus 6 ~l~~FL~~~k~---~----l-~~---------~~~~~~~~iV~Gnes~Dl 38 (142)
++.+||+.+|+ . + .. ..-.++..+|+|||.-=+
T Consensus 65 ~l~~~l~~lk~~~~~g~~i~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gl 114 (165)
T 3n4j_A 65 DYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGL 114 (165)
T ss_dssp SHHHHHHHTTCCSSSCTTEEEECTTCSSBTTTSCCCTTEEEEECCTTTCS
T ss_pred CHHHHHHHHHhhccCCCEEEEEEcCCCcchhhccCCCCeEEEECCCCCCC
Confidence 68889998875 1 1 11 123467899999997433
No 18
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=23.77 E-value=1.3e+02 Score=20.12 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=39.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcCCCCceEecccccCcCCCCChHHHHHHHHcCCCCCceee
Q psy13585 28 HVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLENLIF 92 (142)
Q Consensus 28 ~iV~Gnes~DlDSivSAi~~Ay~~~~~~~~~~vPvini~r~~~~lr~E~~~~L~~~gi~~~~L~f 92 (142)
+.+.|+.+|+. |-=+.+|+..+.-.-..+-+ .++..-+.|..-++++.|++...|+-
T Consensus 6 i~iY~~p~C~~----c~ka~~~L~~~gi~~~~~di----~~~~~~~~eL~~~l~~~g~~~~~l~n 62 (120)
T 3gkx_A 6 TLFLQYPACST----CQKAKKWLIENNIEYTNRLI----VDDNPTVEELKAWIPLSGLPVKKFFN 62 (120)
T ss_dssp CEEEECTTCHH----HHHHHHHHHHTTCCCEEEET----TTTCCCHHHHHHHHHHHTSCGGGGBC
T ss_pred EEEEECCCChH----HHHHHHHHHHcCCceEEEec----ccCcCCHHHHHHHHHHcCCCHHHeEe
Confidence 46789999985 56677788765311122333 35667788999999999998777765
No 19
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=22.78 E-value=1.7e+02 Score=19.54 Aligned_cols=58 Identities=14% Similarity=0.089 Sum_probs=39.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcCCCCceEecccccCcCCCCChHHHHHHHHcCC-CCCceeec
Q psy13585 28 HVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSI-CLENLIFR 93 (142)
Q Consensus 28 ~iV~Gnes~DlDSivSAi~~Ay~~~~~~~~~~vPvini~r~~~~lr~E~~~~L~~~gi-~~~~L~f~ 93 (142)
+.+.|+.+|+. |-=+.+|+..+. ..+ -.+++ .++..-+.|...++++.|+ +...|+-.
T Consensus 7 i~iY~~p~C~~----c~ka~~~L~~~g--i~~-~~~di-~~~~~~~~eL~~~l~~~g~~~~~~l~n~ 65 (121)
T 3rdw_A 7 VTIYHNPRCSK----SRETLALVEQQG--ITP-QVVLY-LETPPSVDKLKELLQQLGFSDARQLMRT 65 (121)
T ss_dssp CEEECCTTCHH----HHHHHHHHHTTT--CCC-EEECT-TTSCCCHHHHHHHHHHTTCSSGGGGBCT
T ss_pred EEEEECCCCHH----HHHHHHHHHHcC--CCc-EEEee-ccCCCcHHHHHHHHHhcCCcCHHHHhcC
Confidence 46789999985 566777887653 212 13333 3456778899999999999 76666654
No 20
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=20.19 E-value=92 Score=21.34 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=32.1
Q ss_pred chhhHHHHHHHHhhhhcCCCCCCCeEEEeCCCCCCHHHHHHHH
Q psy13585 3 ANLSIADFLTQSKHLSENPSPCDTIHVVLGNESCDLDSAVSAI 45 (142)
Q Consensus 3 ~~~~l~~FL~~~k~~l~~~~~~~~~~iV~Gnes~DlDSivSAi 45 (142)
+.+.+.+|..-.|.+|. +.+.+.+.+.++|..+-+|+.++.|
T Consensus 55 ~~~tv~qf~~~iRkrl~-l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 55 ADLTVGQFVYVIRKRIM-LPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp TTSBHHHHHHHHHHHTT-CCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred CCCCHHHHHHHHHHHhC-cCCCccEEEEECCccCCccchHHHH
Confidence 44678899999988874 3466778788898888888877665
Done!