RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13585
(142 letters)
>gnl|CDD|224148 COG1227, PPX1, Inorganic pyrophosphatase/exopolyphosphatase [Energy
production and conversion].
Length = 311
Score = 44.6 bits (106), Expect = 3e-06
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 30 VLGNESCDLDSAVSAILYAYFLVCNGDMRVLP-MLNIPQKQLPIKTEVVYFLQENSICLE 88
V+G+E+ D DS SAI+YAY L G+ L P + + YF E +E
Sbjct: 6 VVGHENPDTDSIASAIVYAYLLNAYGEFEAKAVRLGEPNLETAFVLD--YFGVEAPKLVE 63
Query: 89 NLIFRDSINLEQLSQSGKLKVTLVDHHVLA-NQDKFLKPYVIEILDH 134
++ G+ KV LVDH+ + D ++ I+DH
Sbjct: 64 SV-------------KGEKKVILVDHNEFQQSVDDIEDAEILGIIDH 97
>gnl|CDD|216459 pfam01368, DHH, DHH family. It is predicted that this family of
proteins all perform a phosphoesterase function. It
included the single stranded DNA exonuclease RecJ.
Length = 156
Score = 40.8 bits (96), Expect = 4e-05
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 29 VVLGNESCDLDSAVSAILYAYFLVCNG---DMRVLPMLNIPQKQLPIKTEVVYFLQENSI 85
+++G+ + D D SA A L G + V+P + EV +E +
Sbjct: 9 LIVGHYNPDADGIGSAAALARALKRLGADKVVYVIPDREEEGYGILSPLEVAEEAEEGA- 67
Query: 86 CLENLIFRD----SINLEQLSQSGKLKVTLVDHHVLANQDKF 123
+ LI D + +L++ + V ++DHH D
Sbjct: 68 --DLLITVDTGSTAREEIELAKLLGIDVIVIDHHEPPENDLP 107
>gnl|CDD|235458 PRK05427, PRK05427, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 308
Score = 29.0 bits (66), Expect = 0.70
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 29 VVLGNESCDLDSAVSAILYAYFL 51
+V G+++ D DS SAI YAY
Sbjct: 5 LVFGHKNPDTDSICSAIAYAYLK 27
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 28.5 bits (64), Expect = 1.2
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 36 CDLDSAVSAILYAYFL----VCNGDMRVL 60
DLD+A A+++ + CN R+L
Sbjct: 241 ADLDAAADAVVFGVYFNAGECCNSGSRLL 269
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 28.3 bits (64), Expect = 1.6
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 28 HVVLGNESCDLDSAVSAILYAYFL----VCNGDMRVL 60
+V + DLD+AV ++ F VC R+L
Sbjct: 242 LIVF--DDADLDAAVEGAVFGAFGNAGQVCTAGSRLL 276
>gnl|CDD|239399 cd03125, alpha_CA_VI, Carbonic anhydrase alpha, isozyme VI.
Carbonic anhydrases (CAs) are zinc-containing enzymes
that catalyze the reversible hydration of carbon dioxide
in a two-step mechanism: a nucleophilic attack of a
zinc-bound hydroxide ion on carbon dioxide, followed by
the regeneration of the active site by ionization of the
zinc-bound water molecule and removal of a proton from
the active site. They are ubiquitous enzymes involved in
fundamental processes like photosynthesis, respiration,
pH homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Most alpha CAs are
monomeric enzymes. The zinc ion is complexed by three
histidine residues. This sub-family comprises the
secreted CA VI, which is found in saliva.
Length = 249
Score = 27.1 bits (60), Expect = 2.9
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 86 CLENL---IFRDSINLEQLSQSGKLKVTLVDHH 115
C EN+ +F D + L + +Q KL+ TL+DHH
Sbjct: 194 CTENVLWFVFDDPVTLSK-TQIVKLENTLMDHH 225
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 27.2 bits (61), Expect = 3.1
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 101 LSQSGKLKVTLVDHHVL--ANQDKF 123
L++SG LKV L++ L F
Sbjct: 18 LARSGGLKVALIEATPLPAPADPGF 42
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 27.4 bits (61), Expect = 3.2
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 36 CDLDSAVSAILYAYFL----VCNGDMRV 59
CD D+AV+ IL + FL VC G RV
Sbjct: 262 CDFDAAVAGILRSAFLNTGQVCLGTERV 289
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 27.3 bits (61), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 34 ESCDLDSAVSAILYAYFL----VCNGDMRVL 60
+ DL++AV+ + A FL VC+ RV
Sbjct: 235 DDADLENAVNGAMMANFLSQGQVCSNGTRVF 265
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 27.1 bits (61), Expect = 3.8
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 34 ESCDLDSAVSAILYAYFL----VCNGDMRVL 60
DLD AV A + + F VC R+L
Sbjct: 237 ADADLDRAVDAAVRSSFSNNGEVCLAGSRIL 267
>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 27.1 bits (61), Expect = 3.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 25 DTIHVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLP 61
I+V+ G+++ D DS SAI YA G+ +P
Sbjct: 3 KPIYVI-GHKNPDTDSICSAIAYAELKNKLGEGNYIP 38
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 26.4 bits (59), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 25 DTIHVVLGNESCDLDSAVSAILYAYF 50
D I VV +E DLD A +I+ + F
Sbjct: 291 DAI-VV--DEDADLDLAAESIVASAF 313
>gnl|CDD|178240 PLN02633, PLN02633, palmitoyl protein thioesterase family protein.
Length = 314
Score = 26.0 bits (57), Expect = 8.2
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 90 LIFRDSINLEQLSQSGKLKVTLV--DHHVLANQDKFLKPYVIEILDHRPVSP 139
L D I L+ L +GK+K V H ++A++D + YV+ L + +
Sbjct: 252 LYTEDWIGLKTLDDAGKVKFVSVPGGHLIMADED--VVKYVVPYLQDQQSAA 301
>gnl|CDD|131424 TIGR02371, ala_DH_arch, alanine dehydrogenase, Archaeoglobus
fulgidus type. This enzyme, a homolog of bacterial
ornithine cyclodeaminases and marsupial mu-crystallins,
is a homodimeric, NAD-dependent alanine dehydrogenase
found in Archaeoglobus fulgidus and several other
Archaea. For a number of close homologs, scoring
between trusted and noise cutoffs, it is not clear at
present what is the enzymatic activity.
Length = 325
Score = 26.0 bits (57), Expect = 9.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 46 LYAYFLVCNGDMRVLP 61
+Y +F NGD+RV+P
Sbjct: 41 MYLFFRRYNGDLRVMP 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.397
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,892,782
Number of extensions: 592717
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 23
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)